Wall clock time and date at job start Mon Mar 30 2020 02:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39868 * 125.89970 * 2 1 4 4 C 1.35320 * 107.91720 * 180.14501 * 3 2 1 5 5 C 1.50697 * 126.12253 * 179.90641 * 4 3 2 6 6 C 1.50700 * 109.47266 * 274.71446 * 5 4 3 7 7 O 1.21279 * 120.00113 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99961 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.62995 * 359.72079 * 8 6 5 10 10 C 1.52758 * 109.00682 * 233.58186 * 9 8 6 11 11 C 1.53039 * 109.38439 * 305.58958 * 10 9 8 12 12 C 1.50695 * 109.44663 * 181.25425 * 11 10 9 13 13 H 1.08006 * 120.00026 * 239.94086 * 12 11 10 14 14 C 1.37879 * 120.00293 * 59.93967 * 12 11 10 15 15 N 1.31514 * 119.99937 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00047 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47326 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46976 * 120.00143 * 16 14 12 19 19 H 1.48492 * 109.47196 * 239.99794 * 16 14 12 20 20 C 1.53041 * 109.53647 * 61.24252 * 11 10 9 21 21 C 1.46923 * 120.62964 * 179.97438 * 8 6 5 22 22 N 1.34943 * 107.74712 * 359.64383 * 4 3 2 23 23 H 0.97007 * 126.03687 * 180.20414 * 22 4 3 24 24 N 1.30841 * 125.89598 * 179.75062 * 2 1 3 25 25 H 1.09007 * 109.46834 * 270.22802 * 1 2 3 26 26 H 1.09002 * 109.46907 * 30.22617 * 1 2 3 27 27 H 1.09000 * 109.47391 * 150.23113 * 1 2 3 28 28 H 1.07993 * 126.04258 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.47205 * 154.71540 * 5 4 3 30 30 H 1.08997 * 109.47395 * 34.72032 * 5 4 3 31 31 H 1.09003 * 109.58790 * 353.42296 * 9 8 6 32 32 H 1.09007 * 109.58432 * 113.84106 * 9 8 6 33 33 H 1.08998 * 109.56153 * 185.55612 * 10 9 8 34 34 H 1.09003 * 109.38437 * 65.51806 * 10 9 8 35 35 H 1.09000 * 109.45771 * 301.22193 * 11 10 9 36 36 H 0.96992 * 119.99887 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.49638 * 178.68503 * 20 11 10 38 38 H 1.08997 * 109.52468 * 58.59952 * 20 11 10 39 39 H 1.08998 * 109.59009 * 246.15627 * 21 8 6 40 40 H 1.09003 * 109.58381 * 6.44334 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7152 -0.0033 5 6 4.8350 1.5988 -0.0064 6 6 5.1699 1.9878 -1.4233 7 8 4.4845 1.5875 -2.3402 8 7 6.2312 2.7807 -1.6715 9 6 7.0674 3.2786 -0.5708 10 6 7.1666 4.7997 -0.6701 11 6 7.6664 5.1862 -2.0640 12 6 7.7942 6.6850 -2.1535 13 1 7.2234 7.2328 -2.8887 14 6 8.6399 7.3572 -1.2967 15 7 9.3347 6.6903 -0.4011 16 14 8.7989 9.2151 -1.4081 17 1 7.9178 9.7233 -2.4899 18 1 8.3964 9.8247 -0.1151 19 1 10.2083 9.5743 -1.7072 20 6 6.6718 4.6954 -3.1186 21 6 6.5706 3.1681 -3.0475 22 7 3.6087 -0.6342 0.0027 23 1 4.3908 -1.2081 0.0050 24 7 2.2741 -1.0599 0.0046 25 1 -0.3633 0.0041 1.0277 26 1 -0.3633 0.8880 -0.5174 27 1 -0.3634 -0.8920 -0.5102 28 1 1.9924 2.1597 0.0004 29 1 5.6753 1.0591 0.4304 30 1 4.6357 2.4961 0.5793 31 1 6.6168 3.0046 0.3832 32 1 8.0646 2.8445 -0.6442 33 1 7.8636 5.1698 0.0818 34 1 6.1830 5.2382 -0.5017 35 1 8.6392 4.7275 -2.2411 36 1 9.9299 7.1631 0.2014 37 1 7.0165 4.9913 -4.1093 38 1 5.6925 5.1344 -2.9279 39 1 7.5265 2.7249 -3.3267 40 1 5.7935 2.8191 -3.7276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:28 Heat of formation + Delta-G solvation = 22.199057 kcal Electronic energy + Delta-G solvation = -21391.706913 eV Core-core repulsion = 18207.343946 eV Total energy + Delta-G solvation = -3184.362967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30805 -39.62643 -36.89540 -33.63726 -33.38129 -31.99969 -31.04466 -30.14978 -28.09382 -27.62105 -26.02403 -23.09900 -22.40686 -20.93307 -19.93040 -19.82485 -18.45214 -17.34754 -17.02052 -16.20688 -15.45004 -15.20164 -14.69554 -14.59510 -13.83706 -13.65720 -13.43135 -13.18745 -13.10978 -12.87928 -12.85490 -12.57131 -12.54311 -12.13954 -11.87761 -11.59812 -11.37648 -11.00507 -10.66612 -10.58621 -10.44331 -10.18264 -9.77058 -9.58580 -9.23807 -9.22569 -8.99419 -8.56243 -8.44242 -8.09894 -6.09209 -4.15066 1.83308 2.73439 2.81486 2.87656 3.23582 3.32521 3.36597 3.45077 4.36490 4.44386 4.69110 4.79279 4.90851 5.20327 5.22742 5.33436 5.51444 5.52587 5.62481 5.73231 5.76162 5.85927 5.87174 5.98807 6.08674 6.16876 6.21046 6.37725 6.58440 6.68030 6.81799 6.96208 7.05982 7.18818 7.26910 7.60007 7.69373 7.81294 7.84896 7.97188 8.34090 8.43424 8.88661 9.50562 10.96421 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033352 B = 0.003514 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.321396 B = 7966.814378 C = 8090.641696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.074 3.926 3 C -0.255 4.255 4 C 0.117 3.883 5 C -0.082 4.082 6 C 0.512 3.488 7 O -0.547 6.547 8 N -0.598 5.598 9 C 0.101 3.899 10 C -0.126 4.126 11 C 0.048 3.952 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.123 4.123 21 C 0.112 3.888 22 N -0.471 5.471 23 H 0.435 0.565 24 N -0.298 5.298 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.851 -10.606 3.774 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C -0.284 4.284 4 C -0.012 4.012 5 C -0.124 4.124 6 C 0.299 3.701 7 O -0.425 6.425 8 N -0.331 5.331 9 C -0.021 4.021 10 C -0.164 4.164 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.161 4.161 21 C -0.010 4.010 22 N -0.179 5.179 23 H 0.279 0.721 24 N -0.122 5.122 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.059 -12.032 3.431 15.447 hybrid contribution 0.801 1.758 0.069 1.933 sum -8.258 -10.274 3.499 13.638 Atomic orbital electron populations 1.20164 0.86820 1.03297 1.02752 1.22267 0.96934 0.90712 0.99290 1.21066 0.90862 0.99886 1.16629 1.20351 0.96144 0.84570 1.00154 1.20350 0.94862 1.00149 0.97002 1.20185 0.80563 0.79076 0.90298 1.90700 1.50247 1.55328 1.46222 1.48240 1.28078 1.47794 1.08985 1.22011 0.93884 0.98638 0.87554 1.21961 1.01335 0.89578 1.03550 1.18635 0.93179 0.95679 0.89515 1.21243 1.24427 0.91909 1.17358 0.92627 1.24958 0.95423 0.98261 0.95331 1.69831 1.27538 1.35226 1.20544 0.86557 0.77847 0.85798 0.77939 1.19815 1.21031 1.21053 1.22016 1.01081 0.92035 1.01014 1.21719 1.00137 0.97153 0.81985 1.46142 1.07216 1.04736 1.59778 0.72132 1.77212 0.86438 1.22485 1.26050 0.90640 0.90387 0.91069 0.83676 0.87810 0.85972 0.91439 0.91763 0.87619 0.94128 0.95455 0.93010 0.92102 0.92879 0.92182 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 36.01 0.38 -0.30 16 2 C 0.07 1.00 7.22 -82.40 -0.59 0.40 16 3 C -0.26 -3.51 10.65 -40.01 -0.43 -3.94 16 4 C 0.12 1.57 5.70 -82.27 -0.47 1.10 16 5 C -0.08 -0.98 4.60 -29.04 -0.13 -1.12 16 6 C 0.51 8.26 7.69 -10.98 -0.08 8.17 16 7 O -0.55 -10.72 15.45 5.56 0.09 -10.63 16 8 N -0.60 -9.93 2.98 -173.00 -0.52 -10.44 16 9 C 0.10 1.62 6.31 -3.93 -0.02 1.60 16 10 C -0.13 -2.59 5.14 -26.84 -0.14 -2.73 16 11 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 12 C -0.51 -13.21 8.56 -34.44 -0.29 -13.51 16 13 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 14 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 15 N -0.89 -23.67 11.30 55.43 0.63 -23.05 16 16 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.12 -2.43 5.30 -26.59 -0.14 -2.57 16 21 C 0.11 1.97 6.44 -3.69 -0.02 1.94 16 22 N -0.47 -6.11 7.36 33.48 0.25 -5.86 16 23 H 0.44 4.37 8.96 -182.60 -1.64 2.73 16 24 N -0.30 -4.32 12.70 33.67 0.43 -3.90 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.10 0.96 7.95 -51.93 -0.41 0.55 16 30 H 0.12 1.29 7.68 -51.93 -0.40 0.89 16 31 H 0.07 0.87 5.94 -51.93 -0.31 0.56 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 2.44 6.03 -51.93 -0.31 2.13 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -31.05 327.01 -8.66 -39.71 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.20 Total: 2.43 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.24 Total: -8.53 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.79 Total: -43.25 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.05 -8.66 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.910 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds