Wall clock time and date at job start Mon Mar 30 2020 02:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39868 * 125.89970 * 2 1 4 4 C 1.35320 * 107.91720 * 180.14501 * 3 2 1 5 5 C 1.50697 * 126.12253 * 179.90641 * 4 3 2 6 6 C 1.50700 * 109.47266 * 274.71446 * 5 4 3 7 7 O 1.21279 * 120.00113 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99961 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.62995 * 359.72079 * 8 6 5 10 10 C 1.52758 * 109.00682 * 233.58186 * 9 8 6 11 11 C 1.53039 * 109.38439 * 305.58958 * 10 9 8 12 12 C 1.50695 * 109.44663 * 181.25425 * 11 10 9 13 13 H 1.08006 * 120.00026 * 239.94086 * 12 11 10 14 14 C 1.37879 * 120.00293 * 59.93967 * 12 11 10 15 15 N 1.31514 * 119.99937 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00047 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47326 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46976 * 120.00143 * 16 14 12 19 19 H 1.48492 * 109.47196 * 239.99794 * 16 14 12 20 20 C 1.53041 * 109.53647 * 61.24252 * 11 10 9 21 21 C 1.46923 * 120.62964 * 179.97438 * 8 6 5 22 22 N 1.34943 * 107.74712 * 359.64383 * 4 3 2 23 23 H 0.97007 * 126.03687 * 180.20414 * 22 4 3 24 24 N 1.30841 * 125.89598 * 179.75062 * 2 1 3 25 25 H 1.09007 * 109.46834 * 270.22802 * 1 2 3 26 26 H 1.09002 * 109.46907 * 30.22617 * 1 2 3 27 27 H 1.09000 * 109.47391 * 150.23113 * 1 2 3 28 28 H 1.07993 * 126.04258 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.47205 * 154.71540 * 5 4 3 30 30 H 1.08997 * 109.47395 * 34.72032 * 5 4 3 31 31 H 1.09003 * 109.58790 * 353.42296 * 9 8 6 32 32 H 1.09007 * 109.58432 * 113.84106 * 9 8 6 33 33 H 1.08998 * 109.56153 * 185.55612 * 10 9 8 34 34 H 1.09003 * 109.38437 * 65.51806 * 10 9 8 35 35 H 1.09000 * 109.45771 * 301.22193 * 11 10 9 36 36 H 0.96992 * 119.99887 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.49638 * 178.68503 * 20 11 10 38 38 H 1.08997 * 109.52468 * 58.59952 * 20 11 10 39 39 H 1.08998 * 109.59009 * 246.15627 * 21 8 6 40 40 H 1.09003 * 109.58381 * 6.44334 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7152 -0.0033 5 6 4.8350 1.5988 -0.0064 6 6 5.1699 1.9878 -1.4233 7 8 4.4845 1.5875 -2.3402 8 7 6.2312 2.7807 -1.6715 9 6 7.0674 3.2786 -0.5708 10 6 7.1666 4.7997 -0.6701 11 6 7.6664 5.1862 -2.0640 12 6 7.7942 6.6850 -2.1535 13 1 7.2234 7.2328 -2.8887 14 6 8.6399 7.3572 -1.2967 15 7 9.3347 6.6903 -0.4011 16 14 8.7989 9.2151 -1.4081 17 1 7.9178 9.7233 -2.4899 18 1 8.3964 9.8247 -0.1151 19 1 10.2083 9.5743 -1.7072 20 6 6.6718 4.6954 -3.1186 21 6 6.5706 3.1681 -3.0475 22 7 3.6087 -0.6342 0.0027 23 1 4.3908 -1.2081 0.0050 24 7 2.2741 -1.0599 0.0046 25 1 -0.3633 0.0041 1.0277 26 1 -0.3633 0.8880 -0.5174 27 1 -0.3634 -0.8920 -0.5102 28 1 1.9924 2.1597 0.0004 29 1 5.6753 1.0591 0.4304 30 1 4.6357 2.4961 0.5793 31 1 6.6168 3.0046 0.3832 32 1 8.0646 2.8445 -0.6442 33 1 7.8636 5.1698 0.0818 34 1 6.1830 5.2382 -0.5017 35 1 8.6392 4.7275 -2.2411 36 1 9.9299 7.1631 0.2014 37 1 7.0165 4.9913 -4.1093 38 1 5.6925 5.1344 -2.9279 39 1 7.5265 2.7249 -3.3267 40 1 5.7935 2.8191 -3.7276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259880925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:28 Heat of formation + Delta-G solvation = 3.041666 kcal Electronic energy + Delta-G solvation = -21392.537640 eV Core-core repulsion = 18207.343946 eV Total energy + Delta-G solvation = -3185.193694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.30634 -40.94986 -38.40641 -35.32813 -34.41735 -33.29234 -32.46212 -31.62095 -29.09437 -28.64989 -27.66730 -24.72032 -23.90109 -22.15208 -21.20826 -20.84183 -19.84482 -18.63093 -18.33558 -17.90085 -16.75954 -16.45481 -16.44223 -15.71028 -14.94989 -14.83215 -14.78235 -14.74114 -14.38984 -14.17720 -14.05845 -13.76943 -13.49644 -13.28785 -13.14565 -13.05471 -12.81116 -12.73072 -12.42200 -12.13637 -11.90650 -11.55693 -11.45778 -11.03281 -10.99388 -10.72359 -10.38076 -10.20002 -9.57271 -9.54516 -8.06912 -6.19178 0.82363 1.41001 1.45230 1.54394 1.59674 1.73565 1.93908 2.21856 2.45416 3.20089 3.47228 3.62998 3.81658 4.04817 4.16917 4.28688 4.36444 4.42264 4.51435 4.53518 4.60236 4.72905 4.79115 4.84088 4.88070 4.90426 5.00806 5.10272 5.20604 5.24301 5.27912 5.45724 5.56319 5.67484 5.75376 6.01843 6.17597 6.37481 6.41952 6.51892 6.72524 6.90209 7.15673 7.48553 8.96466 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033352 B = 0.003514 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.321396 B = 7966.814378 C = 8090.641696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.064 3.936 3 C -0.277 4.277 4 C 0.112 3.888 5 C -0.074 4.074 6 C 0.513 3.487 7 O -0.584 6.584 8 N -0.600 5.600 9 C 0.111 3.889 10 C -0.118 4.118 11 C 0.045 3.955 12 C -0.534 4.534 13 H 0.044 0.956 14 C 0.020 3.980 15 N -0.910 5.910 16 Si 0.945 3.055 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.282 1.282 20 C -0.113 4.113 21 C 0.118 3.882 22 N -0.469 5.469 23 H 0.445 0.555 24 N -0.326 5.326 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.003 0.997 36 H 0.261 0.739 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 -11.023 4.819 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.306 4.306 4 C -0.018 4.018 5 C -0.115 4.115 6 C 0.302 3.698 7 O -0.465 6.465 8 N -0.332 5.332 9 C -0.010 4.010 10 C -0.157 4.157 11 C 0.026 3.974 12 C -0.572 4.572 13 H 0.062 0.938 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.772 3.228 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.208 1.208 20 C -0.152 4.152 21 C -0.005 4.005 22 N -0.179 5.179 23 H 0.291 0.709 24 N -0.151 5.151 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.171 0.829 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.458 -12.462 4.486 16.274 hybrid contribution 0.930 1.910 -0.298 2.145 sum -8.528 -10.552 4.188 14.199 Atomic orbital electron populations 1.20298 0.84554 1.04007 1.04114 1.22870 0.98598 0.90340 0.98335 1.21386 0.91437 1.00533 1.17248 1.20578 0.96591 0.84840 0.99759 1.20413 0.95602 1.01203 0.94287 1.20821 0.79348 0.77977 0.91649 1.90691 1.51221 1.56624 1.47930 1.48257 1.28481 1.47993 1.08501 1.21930 0.94790 0.95118 0.89200 1.21730 0.99799 0.93034 1.01117 1.18612 0.92857 0.93988 0.91897 1.21570 1.24568 0.93815 1.17244 0.93754 1.25577 0.95322 1.01818 0.95199 1.69929 1.27764 1.36393 1.20829 0.85699 0.77636 0.81572 0.77874 1.19896 1.20515 1.20842 1.21855 0.99470 0.93793 1.00051 1.21559 1.00627 0.95232 0.83082 1.46198 1.07296 1.04922 1.59444 0.70932 1.77167 0.87244 1.23433 1.27266 0.88880 0.89233 0.90773 0.82902 0.84259 0.83873 0.87232 0.91215 0.90036 0.95007 0.97837 0.92921 0.92191 0.93961 0.91199 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.45 71.24 0.74 -0.48 16 2 C 0.06 1.64 7.22 43.10 0.31 1.95 16 3 C -0.28 -7.17 10.65 21.99 0.23 -6.93 16 4 C 0.11 2.76 5.70 41.41 0.24 2.99 16 5 C -0.07 -1.52 4.60 29.10 0.13 -1.39 16 6 C 0.51 15.34 7.69 87.66 0.67 16.01 16 7 O -0.58 -22.12 15.45 -3.03 -0.05 -22.16 16 8 N -0.60 -18.67 2.98 -819.64 -2.44 -21.11 16 9 C 0.11 3.29 6.31 86.22 0.54 3.83 16 10 C -0.12 -4.78 5.14 30.53 0.16 -4.62 16 11 C 0.04 2.06 2.07 -11.51 -0.02 2.04 16 12 C -0.53 -27.94 8.56 25.60 0.22 -27.72 16 13 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 14 C 0.02 1.04 5.30 84.66 0.45 1.49 16 15 N -0.91 -48.33 11.30 21.45 0.24 -48.09 16 16 Si 0.95 41.78 29.54 68.60 2.03 43.80 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 C -0.11 -4.48 5.30 30.69 0.16 -4.32 16 21 C 0.12 4.02 6.44 86.38 0.56 4.57 16 22 N -0.47 -11.38 7.36 -48.00 -0.35 -11.73 16 23 H 0.45 8.14 8.96 -213.32 -1.91 6.23 16 24 N -0.33 -9.11 12.70 -47.38 -0.60 -9.72 16 25 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.14 1.90 7.95 -2.38 -0.02 1.88 16 30 H 0.14 2.41 7.68 -2.39 -0.02 2.39 16 31 H 0.11 2.34 5.94 -2.39 -0.01 2.32 16 32 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.08 3.74 6.03 -2.39 -0.01 3.72 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 2.67 7.00 -2.39 -0.02 2.65 16 Total: -1.00 -67.27 327.01 2.36 -64.91 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.87 Total: 16.68 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.40 Total: -12.58 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -3.15 Total: -90.65 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.16 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -67.27 2.36 -64.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.950 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds