Wall clock time and date at job start Mon Mar 30 2020 02:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30443 * 125.99180 * 2 1 4 4 N 1.39933 * 108.90053 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.75346 * 180.02562 * 4 3 2 6 6 C 1.34264 * 108.49008 * 359.75168 * 4 3 2 7 7 C 1.38049 * 107.41521 * 0.39541 * 6 4 3 8 8 C 1.47421 * 126.41474 * 179.87290 * 7 6 4 9 9 O 1.21610 * 120.00459 * 139.56056 * 8 7 6 10 10 N 1.34787 * 119.99901 * 319.56514 * 8 7 6 11 11 C 1.46920 * 120.62937 * 174.07600 * 10 8 7 12 12 C 1.53191 * 108.77822 * 126.66546 * 11 10 8 13 13 C 1.53040 * 109.31180 * 54.62912 * 12 11 10 14 14 C 1.50700 * 109.44597 * 178.62468 * 13 12 11 15 15 H 1.08000 * 120.00035 * 120.06500 * 14 13 12 16 16 C 1.37876 * 120.00290 * 300.05910 * 14 13 12 17 17 N 1.31518 * 119.99807 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00483 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47087 * 90.00089 * 18 16 14 20 20 H 1.48497 * 109.47444 * 210.00407 * 18 16 14 21 21 H 1.48503 * 109.46689 * 330.00696 * 18 16 14 22 22 C 1.53041 * 109.54010 * 298.63718 * 13 12 11 23 23 C 1.46923 * 120.62621 * 354.35053 * 10 8 7 24 24 H 1.08994 * 109.47654 * 270.00166 * 1 2 3 25 25 H 1.09000 * 109.46839 * 29.99871 * 1 2 3 26 26 H 1.08999 * 109.47569 * 149.99524 * 1 2 3 27 27 H 1.09000 * 109.47276 * 89.97774 * 5 4 3 28 28 H 1.09006 * 109.46678 * 209.97442 * 5 4 3 29 29 H 1.08992 * 109.47567 * 329.97228 * 5 4 3 30 30 H 1.07999 * 126.29084 * 180.24312 * 6 4 3 31 31 H 1.08999 * 109.58610 * 246.45519 * 11 10 8 32 32 H 1.09004 * 109.59094 * 6.87100 * 11 10 8 33 33 H 1.09011 * 109.49533 * 294.68151 * 12 11 10 34 34 H 1.08995 * 109.50155 * 174.58551 * 12 11 10 35 35 H 1.08996 * 109.45454 * 58.65890 * 13 12 11 36 36 H 0.97005 * 119.99985 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.49892 * 301.41675 * 22 13 12 38 38 H 1.09000 * 109.52365 * 181.33272 * 22 13 12 39 39 H 1.08991 * 109.59222 * 353.12335 * 23 10 8 40 40 H 1.09000 * 109.58095 * 113.40871 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 0.0006 5 6 4.7787 1.5290 0.0013 6 6 3.6439 -0.6981 0.0065 7 6 2.3372 -1.1433 0.0005 8 6 1.8914 -2.5485 0.0012 9 8 0.9400 -2.8844 0.6800 10 7 2.5385 -3.4611 -0.7505 11 6 2.1905 -4.8858 -0.6627 12 6 1.8924 -5.4084 -2.0715 13 6 3.0825 -5.1072 -2.9854 14 6 2.8065 -5.6500 -4.3639 15 1 2.7852 -4.9827 -5.2127 16 6 2.5814 -6.9986 -4.5415 17 7 2.6070 -7.8113 -3.5077 18 14 2.2400 -7.6716 -6.2502 19 1 3.5212 -8.0534 -6.8969 20 1 1.3630 -8.8655 -6.1460 21 1 1.5646 -6.6308 -7.0662 22 6 3.2954 -3.5939 -3.0665 23 6 3.6094 -3.0508 -1.6689 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 5.0675 1.7486 1.0291 28 1 5.6062 1.0389 -0.5118 29 1 4.5312 2.4576 -0.5129 30 1 4.5297 -1.3158 0.0121 31 1 3.0263 -5.4405 -0.2364 32 1 1.3090 -5.0086 -0.0333 33 1 1.0010 -4.9165 -2.4610 34 1 1.7267 -6.4850 -2.0328 35 1 3.9785 -5.5789 -2.5820 36 1 2.4482 -8.7601 -3.6326 37 1 2.3909 -3.1191 -3.4465 38 1 4.1282 -3.3786 -3.7361 39 1 3.6642 -1.9628 -1.7036 40 1 4.5614 -3.4538 -1.3234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259950540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:34 Heat of formation + Delta-G solvation = 35.871255 kcal Electronic energy + Delta-G solvation = -21914.313937 eV Core-core repulsion = 18730.543841 eV Total energy + Delta-G solvation = -3183.770096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.45047 -39.13867 -36.66997 -34.03390 -33.53858 -31.38990 -30.79107 -29.74779 -29.24330 -26.50461 -25.60992 -23.34653 -22.41773 -21.66717 -20.36125 -19.49393 -18.45411 -16.90792 -16.54076 -15.97336 -15.70786 -15.23439 -14.60587 -14.52957 -14.08499 -13.55624 -13.52554 -13.22690 -13.03376 -12.78169 -12.67330 -12.41335 -12.26778 -12.09573 -12.07289 -11.69825 -11.13642 -10.93976 -10.79607 -10.62771 -10.40816 -10.05685 -9.55512 -9.49749 -9.39323 -9.11341 -8.90221 -8.53940 -8.35501 -7.91293 -6.00897 -4.07524 1.58620 2.28226 2.31518 3.29116 3.36497 3.38720 3.39664 3.71097 4.30784 4.42245 4.59937 4.83060 4.87297 5.12200 5.13881 5.24975 5.28957 5.47898 5.58407 5.73919 5.77691 5.89672 5.95532 5.98141 6.11222 6.30769 6.43745 6.49967 6.54432 6.65436 6.75053 6.91059 6.99780 7.24059 7.37503 7.57958 7.71491 7.93890 8.00298 8.09417 8.41796 8.69337 8.95759 9.57569 11.04436 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.004341 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.354580 B = 6448.215721 C = 6799.779026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.125 3.875 3 N -0.305 5.305 4 N -0.367 5.367 5 C 0.099 3.901 6 C 0.094 3.906 7 C -0.273 4.273 8 C 0.588 3.412 9 O -0.552 6.552 10 N -0.597 5.597 11 C 0.111 3.889 12 C -0.122 4.122 13 C 0.049 3.951 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.123 4.123 23 C 0.103 3.897 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.183 0.817 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 15.078 6.909 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.042 4.042 3 N -0.127 5.127 4 N -0.146 5.146 5 C -0.042 4.042 6 C -0.056 4.056 7 C -0.288 4.288 8 C 0.376 3.624 9 O -0.431 6.431 10 N -0.329 5.329 11 C -0.011 4.011 12 C -0.161 4.161 13 C 0.031 3.969 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.161 4.161 23 C -0.020 4.020 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.200 0.800 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.121 0.879 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.323 16.070 7.297 18.170 hybrid contribution 0.155 -1.317 -1.019 1.673 sum 4.478 14.752 6.278 16.646 Atomic orbital electron populations 1.20213 0.85908 1.03355 1.03509 1.22386 0.97086 0.88842 0.95899 1.77106 0.86028 1.22619 1.26994 1.48231 1.05976 1.04694 1.55719 1.21934 0.83945 0.94714 1.03580 1.23101 0.98984 0.84910 0.98593 1.20310 0.92219 0.94854 1.21434 1.17303 0.82239 0.83510 0.79363 1.90719 1.27994 1.80609 1.43746 1.48092 1.36585 1.08075 1.40115 1.21881 1.00274 0.78284 1.00639 1.22002 0.99339 1.03573 0.91174 1.18634 0.94453 0.88607 0.95243 1.21189 1.48252 0.92649 0.93056 0.92781 1.24957 0.95247 0.97091 0.96621 1.69846 1.49976 1.03871 1.29220 0.86627 0.78155 0.78574 0.84832 1.20764 1.21232 1.19998 1.21995 1.00659 1.00294 0.93172 1.21992 0.89531 0.99128 0.91342 0.89986 0.91001 0.89851 0.90549 0.89103 0.89006 0.79968 0.92373 0.90485 0.94289 0.87880 0.95539 0.92965 0.92877 0.92279 0.91035 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 9.95 36.01 0.36 -0.58 16 2 C 0.12 1.90 7.26 -82.02 -0.60 1.31 16 3 N -0.31 -4.39 12.50 33.89 0.42 -3.97 16 4 N -0.37 -4.27 3.98 -67.60 -0.27 -4.54 16 5 C 0.10 0.63 11.44 59.85 0.68 1.32 16 6 C 0.09 1.16 9.11 -16.56 -0.15 1.00 16 7 C -0.27 -4.29 5.21 -105.07 -0.55 -4.84 16 8 C 0.59 10.89 7.34 -12.52 -0.09 10.80 16 9 O -0.55 -11.74 15.94 5.27 0.08 -11.66 16 10 N -0.60 -10.91 2.97 -174.04 -0.52 -11.43 16 11 C 0.11 2.22 6.44 -3.71 -0.02 2.19 16 12 C -0.12 -2.84 5.15 -26.61 -0.14 -2.97 16 13 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 14 C -0.51 -13.65 8.56 -34.44 -0.29 -13.95 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.69 11.30 55.43 0.63 -24.06 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 23 C 0.10 1.66 5.46 -3.71 -0.02 1.64 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.20 7.81 -51.93 -0.41 0.79 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.18 1.68 7.34 -52.49 -0.39 1.29 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.58 7.00 -51.93 -0.36 1.21 16 33 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.10 2.66 6.03 -51.93 -0.31 2.34 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.07 1.00 4.83 -51.93 -0.25 0.75 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -32.27 324.76 -6.93 -39.20 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.91 Total: -0.27 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.24 Total: -4.08 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.26 Total: -43.99 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.27 -6.93 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259950540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.073 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds