Wall clock time and date at job start Mon Mar 30 2020 02:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30443 * 125.99180 * 2 1 4 4 N 1.39933 * 108.90053 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.75346 * 180.02562 * 4 3 2 6 6 C 1.34264 * 108.49008 * 359.75168 * 4 3 2 7 7 C 1.38049 * 107.41521 * 0.39541 * 6 4 3 8 8 C 1.47421 * 126.41474 * 179.87290 * 7 6 4 9 9 O 1.21610 * 120.00459 * 139.56056 * 8 7 6 10 10 N 1.34787 * 119.99901 * 319.56514 * 8 7 6 11 11 C 1.46920 * 120.62937 * 174.07600 * 10 8 7 12 12 C 1.53191 * 108.77822 * 126.66546 * 11 10 8 13 13 C 1.53040 * 109.31180 * 54.62912 * 12 11 10 14 14 C 1.50700 * 109.44597 * 178.62468 * 13 12 11 15 15 H 1.08000 * 120.00035 * 120.06500 * 14 13 12 16 16 C 1.37876 * 120.00290 * 300.05910 * 14 13 12 17 17 N 1.31518 * 119.99807 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00483 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47087 * 90.00089 * 18 16 14 20 20 H 1.48497 * 109.47444 * 210.00407 * 18 16 14 21 21 H 1.48503 * 109.46689 * 330.00696 * 18 16 14 22 22 C 1.53041 * 109.54010 * 298.63718 * 13 12 11 23 23 C 1.46923 * 120.62621 * 354.35053 * 10 8 7 24 24 H 1.08994 * 109.47654 * 270.00166 * 1 2 3 25 25 H 1.09000 * 109.46839 * 29.99871 * 1 2 3 26 26 H 1.08999 * 109.47569 * 149.99524 * 1 2 3 27 27 H 1.09000 * 109.47276 * 89.97774 * 5 4 3 28 28 H 1.09006 * 109.46678 * 209.97442 * 5 4 3 29 29 H 1.08992 * 109.47567 * 329.97228 * 5 4 3 30 30 H 1.07999 * 126.29084 * 180.24312 * 6 4 3 31 31 H 1.08999 * 109.58610 * 246.45519 * 11 10 8 32 32 H 1.09004 * 109.59094 * 6.87100 * 11 10 8 33 33 H 1.09011 * 109.49533 * 294.68151 * 12 11 10 34 34 H 1.08995 * 109.50155 * 174.58551 * 12 11 10 35 35 H 1.08996 * 109.45454 * 58.65890 * 13 12 11 36 36 H 0.97005 * 119.99985 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.49892 * 301.41675 * 22 13 12 38 38 H 1.09000 * 109.52365 * 181.33272 * 22 13 12 39 39 H 1.08991 * 109.59222 * 353.12335 * 23 10 8 40 40 H 1.09000 * 109.58095 * 113.40871 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 0.0006 5 6 4.7787 1.5290 0.0013 6 6 3.6439 -0.6981 0.0065 7 6 2.3372 -1.1433 0.0005 8 6 1.8914 -2.5485 0.0012 9 8 0.9400 -2.8844 0.6800 10 7 2.5385 -3.4611 -0.7505 11 6 2.1905 -4.8858 -0.6627 12 6 1.8924 -5.4084 -2.0715 13 6 3.0825 -5.1072 -2.9854 14 6 2.8065 -5.6500 -4.3639 15 1 2.7852 -4.9827 -5.2127 16 6 2.5814 -6.9986 -4.5415 17 7 2.6070 -7.8113 -3.5077 18 14 2.2400 -7.6716 -6.2502 19 1 3.5212 -8.0534 -6.8969 20 1 1.3630 -8.8655 -6.1460 21 1 1.5646 -6.6308 -7.0662 22 6 3.2954 -3.5939 -3.0665 23 6 3.6094 -3.0508 -1.6689 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 5.0675 1.7486 1.0291 28 1 5.6062 1.0389 -0.5118 29 1 4.5312 2.4576 -0.5129 30 1 4.5297 -1.3158 0.0121 31 1 3.0263 -5.4405 -0.2364 32 1 1.3090 -5.0086 -0.0333 33 1 1.0010 -4.9165 -2.4610 34 1 1.7267 -6.4850 -2.0328 35 1 3.9785 -5.5789 -2.5820 36 1 2.4482 -8.7601 -3.6326 37 1 2.3909 -3.1191 -3.4465 38 1 4.1282 -3.3786 -3.7361 39 1 3.6642 -1.9628 -1.7036 40 1 4.5614 -3.4538 -1.3234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259950540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:33 Heat of formation + Delta-G solvation = 15.546637 kcal Electronic energy + Delta-G solvation = -21915.195278 eV Core-core repulsion = 18730.543841 eV Total energy + Delta-G solvation = -3184.651438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.49160 -40.57690 -38.27708 -35.35714 -34.92582 -33.06968 -32.29142 -30.93645 -30.29002 -28.12471 -26.74068 -24.90052 -23.98154 -22.94082 -21.61846 -20.88118 -19.80989 -18.48979 -18.07062 -17.33120 -16.69459 -16.51044 -16.48376 -15.86772 -15.19912 -14.89115 -14.81699 -14.55805 -14.39091 -14.15294 -14.11459 -13.70761 -13.41165 -13.28599 -13.03249 -13.00516 -12.93995 -12.80140 -12.43615 -12.14950 -11.95730 -11.82301 -11.41453 -11.08549 -10.85700 -10.76553 -10.39101 -10.27243 -9.68389 -9.39488 -8.05939 -6.19565 0.59983 1.14209 1.41776 1.44135 1.48363 1.52805 2.02474 2.36011 2.45398 3.20746 3.38993 3.73643 3.91972 4.08470 4.15432 4.35531 4.40035 4.40295 4.47453 4.56643 4.58539 4.62703 4.71873 4.74783 4.75788 4.90124 4.92136 4.96054 5.02457 5.21427 5.26328 5.47434 5.49741 5.57145 5.71296 5.93780 6.00990 6.13994 6.40947 6.52447 6.63258 6.91621 7.27131 7.48508 8.97326 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.004341 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.354580 B = 6448.215721 C = 6799.779026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.109 3.891 3 N -0.322 5.322 4 N -0.357 5.357 5 C 0.086 3.914 6 C 0.117 3.883 7 C -0.311 4.311 8 C 0.589 3.411 9 O -0.590 6.590 10 N -0.599 5.599 11 C 0.122 3.878 12 C -0.111 4.111 13 C 0.046 3.954 14 C -0.533 4.533 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.914 5.914 18 Si 0.948 3.052 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.116 4.116 23 C 0.110 3.890 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.220 0.780 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.017 0.983 34 H 0.073 0.927 35 H 0.009 0.991 36 H 0.260 0.740 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 16.951 6.726 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 N -0.146 5.146 4 N -0.135 5.135 5 C -0.053 4.053 6 C -0.035 4.035 7 C -0.326 4.326 8 C 0.379 3.621 9 O -0.471 6.471 10 N -0.331 5.331 11 C 0.000 4.000 12 C -0.150 4.150 13 C 0.028 3.972 14 C -0.571 4.571 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.775 3.225 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.155 4.155 23 C -0.012 4.012 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.550 17.992 7.101 20.422 hybrid contribution -0.471 -1.837 -0.961 2.126 sum 6.079 16.155 6.140 18.320 Atomic orbital electron populations 1.20192 0.85686 1.03229 1.03708 1.22588 0.97770 0.89070 0.96317 1.77062 0.87466 1.22528 1.27507 1.48685 1.06176 1.05226 1.53424 1.22439 0.82823 0.94603 1.05398 1.23526 0.98685 0.85423 0.95901 1.20152 0.94126 0.93105 1.25258 1.17708 0.81390 0.84550 0.78443 1.90688 1.29718 1.81431 1.45310 1.48101 1.37226 1.07095 1.40633 1.21562 1.00350 0.79954 0.98167 1.21769 0.98469 1.01545 0.93234 1.18606 0.93430 0.91439 0.93735 1.21586 1.48146 0.92988 0.94406 0.93162 1.25672 0.95249 0.97541 0.99897 1.69972 1.50632 1.03951 1.30838 0.85705 0.78141 0.77766 0.80918 1.19928 1.21229 1.19746 1.21866 1.00599 0.97047 0.95945 1.22091 0.89647 1.00817 0.88620 0.89657 0.89250 0.91738 0.88779 0.85804 0.88431 0.76325 0.91355 0.91458 0.96427 0.90858 0.97287 0.93061 0.94420 0.90762 0.88123 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 9.95 71.24 0.71 -1.14 16 2 C 0.11 3.20 7.26 43.52 0.32 3.52 16 3 N -0.32 -8.59 12.50 -46.68 -0.58 -9.18 16 4 N -0.36 -6.96 3.98 -367.78 -1.46 -8.43 16 5 C 0.09 0.70 11.44 127.77 1.46 2.16 16 6 C 0.12 2.42 9.11 84.28 0.77 3.19 16 7 C -0.31 -9.25 5.21 -20.15 -0.11 -9.36 16 8 C 0.59 21.52 7.34 86.66 0.64 22.16 16 9 O -0.59 -25.63 15.94 -4.06 -0.06 -25.69 16 10 N -0.60 -21.33 2.97 -822.79 -2.45 -23.78 16 11 C 0.12 4.95 6.44 86.36 0.56 5.51 16 12 C -0.11 -5.33 5.15 30.67 0.16 -5.17 16 13 C 0.05 2.21 2.06 -11.51 -0.02 2.19 16 14 C -0.53 -28.63 8.56 25.60 0.22 -28.42 16 15 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 16 C 0.02 0.82 5.30 84.65 0.45 1.27 16 17 N -0.91 -51.68 11.30 21.45 0.24 -51.43 16 18 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.12 -4.39 5.30 30.67 0.16 -4.22 16 23 C 0.11 3.24 5.46 86.36 0.47 3.71 16 24 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.93 7.81 -2.39 -0.02 1.91 16 27 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.22 2.78 7.34 -2.91 -0.02 2.76 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 32 H 0.07 2.85 7.00 -2.39 -0.02 2.83 16 33 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 3.94 6.03 -2.39 -0.01 3.93 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.10 2.42 4.83 -2.39 -0.01 2.41 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.10 324.76 4.52 -67.58 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.03 Total: 10.35 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 5.78 Total: -4.60 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -4.25 Total: -92.81 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.10 4.52 -67.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259950540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.130 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds