Wall clock time and date at job start Mon Mar 30 2020 02:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34255 * 126.28940 * 2 1 4 4 H 0.96999 * 125.75989 * 359.93681 * 3 2 1 5 5 N 1.39942 * 108.48963 * 179.97438 * 3 2 1 6 6 C 1.30454 * 108.89468 * 359.74472 * 5 3 2 7 7 C 1.38045 * 126.28806 * 179.97438 * 2 1 3 8 8 C 1.47424 * 126.41479 * 0.02562 * 7 2 1 9 9 O 1.21598 * 120.00355 * 320.21805 * 8 7 2 10 10 N 1.34786 * 119.99526 * 140.49621 * 8 7 2 11 11 C 1.46923 * 120.63109 * 353.79481 * 10 8 7 12 12 C 1.52761 * 109.00598 * 233.58559 * 11 10 8 13 13 C 1.53048 * 109.38499 * 305.58685 * 12 11 10 14 14 C 1.52994 * 109.46243 * 181.26034 * 13 12 11 15 15 C 1.50703 * 109.46949 * 64.93390 * 14 13 12 16 16 H 1.08002 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00185 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99771 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00297 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46972 * 60.00280 * 19 17 15 21 21 H 1.48498 * 109.47456 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47413 * 300.00195 * 19 17 15 23 23 C 1.53045 * 109.53315 * 61.24043 * 13 12 11 24 24 C 1.46924 * 120.62771 * 174.07622 * 10 8 7 25 25 H 1.09003 * 109.46814 * 270.04627 * 1 2 3 26 26 H 1.09003 * 109.46969 * 30.04378 * 1 2 3 27 27 H 1.08996 * 109.47175 * 150.04757 * 1 2 3 28 28 H 1.07991 * 125.98514 * 180.23030 * 6 5 3 29 29 H 1.08994 * 109.58985 * 353.41617 * 11 10 8 30 30 H 1.09002 * 109.58305 * 113.84837 * 11 10 8 31 31 H 1.09000 * 109.56576 * 185.55403 * 12 11 10 32 32 H 1.09000 * 109.36462 * 65.49741 * 12 11 10 33 33 H 1.09004 * 109.45967 * 301.22605 * 13 12 11 34 34 H 1.08997 * 109.47308 * 184.93487 * 14 13 12 35 35 H 1.08998 * 109.47377 * 304.93572 * 14 13 12 36 36 H 0.96994 * 120.00090 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.49366 * 178.68140 * 23 13 12 38 38 H 1.09002 * 109.52590 * 58.60405 * 23 13 12 39 39 H 1.09004 * 109.58515 * 246.15649 * 24 10 8 40 40 H 1.09008 * 109.58635 * 6.43588 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 -0.0009 5 7 3.6341 0.6544 0.0006 6 6 3.6590 -0.6499 0.0064 7 6 2.3241 -1.1127 0.0005 8 6 1.8857 -2.5203 0.0006 9 8 0.9321 -2.8601 0.6741 10 7 2.5456 -3.4316 -0.7416 11 6 3.6158 -3.0168 -1.6588 12 6 3.3161 -3.5645 -3.0530 13 6 3.1102 -5.0788 -2.9705 14 6 2.8410 -5.6337 -4.3707 15 6 4.0637 -5.4422 -5.2305 16 1 4.9446 -4.9715 -4.8195 17 6 4.0579 -5.8681 -6.5419 18 7 2.9851 -6.4409 -7.0425 19 14 5.5732 -5.6302 -7.6080 20 1 6.7225 -6.3497 -7.0023 21 1 5.3125 -6.1699 -8.9666 22 1 5.8898 -4.1824 -7.7023 23 6 1.9165 -5.3843 -2.0628 24 6 2.2042 -4.8579 -0.6532 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5131 28 1 4.5448 -1.2676 0.0119 29 1 3.6626 -1.9286 -1.6976 30 1 4.5695 -3.4135 -1.3107 31 1 4.1517 -3.3467 -3.7182 32 1 2.4113 -3.0949 -3.4390 33 1 4.0064 -5.5453 -2.5613 34 1 2.6079 -6.6962 -4.3018 35 1 1.9979 -5.1049 -4.8152 36 1 2.9811 -6.7408 -7.9649 37 1 1.7560 -6.4617 -2.0231 38 1 1.0246 -4.8979 -2.4578 39 1 3.0405 -5.4077 -0.2214 40 1 1.3213 -4.9841 -0.0265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:20 Heat of formation + Delta-G solvation = 18.950299 kcal Electronic energy + Delta-G solvation = -21683.209058 eV Core-core repulsion = 18498.705214 eV Total energy + Delta-G solvation = -3184.503844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63272 -39.49059 -37.17463 -34.02135 -32.88056 -32.23697 -31.50868 -30.41626 -28.20908 -27.32526 -24.73769 -23.08012 -22.63367 -21.88082 -21.04701 -19.57268 -18.49900 -17.72877 -16.30918 -16.14454 -15.65629 -15.35920 -14.66642 -14.57772 -14.49294 -13.79438 -13.55607 -13.46591 -13.16292 -12.98862 -12.76227 -12.63708 -12.39869 -12.15945 -11.75550 -11.16416 -11.13630 -10.96115 -10.75548 -10.67006 -10.44750 -10.11232 -9.86847 -9.75952 -9.53963 -9.21618 -8.96847 -8.79101 -8.34561 -8.24706 -5.99031 -4.00997 1.44085 2.11521 2.50053 3.10449 3.32635 3.37804 3.39395 3.43244 4.38783 4.45877 4.50735 4.78787 4.98723 5.22619 5.25965 5.27773 5.36268 5.46418 5.53218 5.58190 5.64920 5.74359 5.76280 5.85228 6.04195 6.12566 6.20370 6.41986 6.45313 6.56410 6.75912 6.91465 7.00281 7.02987 7.13806 7.33076 7.66212 7.68258 7.83266 8.00897 8.39465 8.43279 9.05385 9.62710 11.12226 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.004200 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.245445 B = 6664.937053 C = 7272.042869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.149 3.851 3 N -0.466 5.466 4 H 0.441 0.559 5 N -0.297 5.297 6 C 0.088 3.912 7 C -0.285 4.285 8 C 0.594 3.406 9 O -0.553 6.553 10 N -0.599 5.599 11 C 0.100 3.900 12 C -0.118 4.118 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.129 4.129 24 C 0.114 3.886 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.192 0.808 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 12.487 14.219 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.016 3.984 3 N -0.173 5.173 4 H 0.285 0.715 5 N -0.117 5.117 6 C -0.100 4.100 7 C -0.300 4.300 8 C 0.382 3.618 9 O -0.433 6.433 10 N -0.331 5.331 11 C -0.022 4.022 12 C -0.156 4.156 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.167 4.167 24 C -0.008 4.008 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.208 0.792 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.234 13.259 14.400 19.702 hybrid contribution 0.367 -0.181 -0.872 0.963 sum -1.867 13.079 13.528 18.909 Atomic orbital electron populations 1.20563 0.86158 1.04330 1.04264 1.21459 0.94716 0.86717 0.95470 1.46116 1.04306 1.08363 1.58483 0.71484 1.77158 0.95875 1.13371 1.25308 1.24106 0.97282 0.91758 0.96839 1.20017 0.93058 0.93781 1.23130 1.17258 0.81809 0.83762 0.78948 1.90726 1.28056 1.80777 1.43711 1.47964 1.36699 1.07325 1.41128 1.22013 0.89433 1.00120 0.90678 1.21815 1.02773 0.96970 0.94072 1.21195 0.96051 0.94431 0.98263 1.19118 0.96880 0.95931 0.88996 1.21208 0.99521 1.38787 0.95947 0.92646 1.25016 0.95903 0.95370 0.98127 1.69953 1.28013 1.40642 1.14916 0.86715 0.83534 0.78427 0.79652 1.20285 1.21391 1.20300 1.22018 0.99927 1.00774 0.93984 1.21667 1.01166 0.79485 0.98520 0.89180 0.90829 0.88773 0.79167 0.90000 0.91609 0.89762 0.92442 0.92325 0.96608 0.96693 0.93014 0.91174 0.92105 0.91802 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.90 36.01 0.36 -0.45 16 2 C 0.15 1.63 7.29 -81.60 -0.59 1.04 16 3 N -0.47 -4.48 7.29 33.86 0.25 -4.23 16 4 H 0.44 2.63 8.96 -182.72 -1.64 1.00 16 5 N -0.30 -3.54 12.63 30.86 0.39 -3.15 16 6 C 0.09 1.04 9.63 -16.98 -0.16 0.88 16 7 C -0.29 -3.74 5.20 -105.07 -0.55 -4.29 16 8 C 0.59 9.10 7.31 -12.52 -0.09 9.01 16 9 O -0.55 -9.80 15.82 5.28 0.08 -9.71 16 10 N -0.60 -8.86 2.98 -174.30 -0.52 -9.38 16 11 C 0.10 1.39 5.43 -3.93 -0.02 1.37 16 12 C -0.12 -2.05 5.17 -26.83 -0.14 -2.19 16 13 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 15 C -0.52 -13.93 8.39 -34.44 -0.29 -14.22 16 16 H 0.06 1.43 7.05 -52.49 -0.37 1.06 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.13 -2.16 5.36 -26.61 -0.14 -2.30 16 24 C 0.11 1.69 6.44 -3.71 -0.02 1.66 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.97 7.72 -51.93 -0.40 0.57 16 28 H 0.19 1.83 7.35 -52.49 -0.39 1.44 16 29 H 0.08 1.04 4.81 -51.93 -0.25 0.79 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.55 6.91 -51.93 -0.36 1.19 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.30 6.99 -51.92 -0.36 0.94 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -32.89 324.53 -8.39 -41.28 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.13 Total: -0.90 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.07 Total: -9.18 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.85 Total: -42.58 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.89 -8.39 -41.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.230 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds