Wall clock time and date at job start Mon Mar 30 2020 02:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34255 * 126.28940 * 2 1 4 4 H 0.96999 * 125.75989 * 359.93681 * 3 2 1 5 5 N 1.39942 * 108.48963 * 179.97438 * 3 2 1 6 6 C 1.30454 * 108.89468 * 359.74472 * 5 3 2 7 7 C 1.38045 * 126.28806 * 179.97438 * 2 1 3 8 8 C 1.47424 * 126.41479 * 0.02562 * 7 2 1 9 9 O 1.21598 * 120.00355 * 320.21805 * 8 7 2 10 10 N 1.34786 * 119.99526 * 140.49621 * 8 7 2 11 11 C 1.46923 * 120.63109 * 353.79481 * 10 8 7 12 12 C 1.52761 * 109.00598 * 233.58559 * 11 10 8 13 13 C 1.53048 * 109.38499 * 305.58685 * 12 11 10 14 14 C 1.52994 * 109.46243 * 181.26034 * 13 12 11 15 15 C 1.50703 * 109.46949 * 64.93390 * 14 13 12 16 16 H 1.08002 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00185 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99771 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00297 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46972 * 60.00280 * 19 17 15 21 21 H 1.48498 * 109.47456 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47413 * 300.00195 * 19 17 15 23 23 C 1.53045 * 109.53315 * 61.24043 * 13 12 11 24 24 C 1.46924 * 120.62771 * 174.07622 * 10 8 7 25 25 H 1.09003 * 109.46814 * 270.04627 * 1 2 3 26 26 H 1.09003 * 109.46969 * 30.04378 * 1 2 3 27 27 H 1.08996 * 109.47175 * 150.04757 * 1 2 3 28 28 H 1.07991 * 125.98514 * 180.23030 * 6 5 3 29 29 H 1.08994 * 109.58985 * 353.41617 * 11 10 8 30 30 H 1.09002 * 109.58305 * 113.84837 * 11 10 8 31 31 H 1.09000 * 109.56576 * 185.55403 * 12 11 10 32 32 H 1.09000 * 109.36462 * 65.49741 * 12 11 10 33 33 H 1.09004 * 109.45967 * 301.22605 * 13 12 11 34 34 H 1.08997 * 109.47308 * 184.93487 * 14 13 12 35 35 H 1.08998 * 109.47377 * 304.93572 * 14 13 12 36 36 H 0.96994 * 120.00090 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.49366 * 178.68140 * 23 13 12 38 38 H 1.09002 * 109.52590 * 58.60405 * 23 13 12 39 39 H 1.09004 * 109.58515 * 246.15649 * 24 10 8 40 40 H 1.09008 * 109.58635 * 6.43588 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 -0.0009 5 7 3.6341 0.6544 0.0006 6 6 3.6590 -0.6499 0.0064 7 6 2.3241 -1.1127 0.0005 8 6 1.8857 -2.5203 0.0006 9 8 0.9321 -2.8601 0.6741 10 7 2.5456 -3.4316 -0.7416 11 6 3.6158 -3.0168 -1.6588 12 6 3.3161 -3.5645 -3.0530 13 6 3.1102 -5.0788 -2.9705 14 6 2.8410 -5.6337 -4.3707 15 6 4.0637 -5.4422 -5.2305 16 1 4.9446 -4.9715 -4.8195 17 6 4.0579 -5.8681 -6.5419 18 7 2.9851 -6.4409 -7.0425 19 14 5.5732 -5.6302 -7.6080 20 1 6.7225 -6.3497 -7.0023 21 1 5.3125 -6.1699 -8.9666 22 1 5.8898 -4.1824 -7.7023 23 6 1.9165 -5.3843 -2.0628 24 6 2.2042 -4.8579 -0.6532 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5131 28 1 4.5448 -1.2676 0.0119 29 1 3.6626 -1.9286 -1.6976 30 1 4.5695 -3.4135 -1.3107 31 1 4.1517 -3.3467 -3.7182 32 1 2.4113 -3.0949 -3.4390 33 1 4.0064 -5.5453 -2.5613 34 1 2.6079 -6.6962 -4.3018 35 1 1.9979 -5.1049 -4.8152 36 1 2.9811 -6.7408 -7.9649 37 1 1.7560 -6.4617 -2.0231 38 1 1.0246 -4.8979 -2.4578 39 1 3.0405 -5.4077 -0.2214 40 1 1.3213 -4.9841 -0.0265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:20 Heat of formation + Delta-G solvation = -2.388616 kcal Electronic energy + Delta-G solvation = -21684.134383 eV Core-core repulsion = 18498.705214 eV Total energy + Delta-G solvation = -3185.429169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.52329 -40.68495 -38.54590 -35.66902 -34.11929 -33.57610 -32.67834 -31.55181 -29.83860 -28.30956 -26.35878 -24.32260 -24.07745 -22.80056 -22.40368 -20.97158 -19.63117 -18.73409 -18.37005 -17.24850 -16.77198 -16.52622 -16.33140 -15.65982 -15.50200 -15.11879 -14.95899 -14.61275 -14.54662 -14.20064 -13.92924 -13.77713 -13.65615 -13.29582 -13.14779 -12.94076 -12.70988 -12.45838 -12.29830 -12.09480 -11.99666 -11.74732 -11.32181 -11.09454 -10.87634 -10.81341 -10.58089 -10.47305 -9.77661 -9.45191 -8.13672 -6.23071 0.56682 1.17445 1.43495 1.45680 1.53040 1.73470 2.00615 2.34360 2.45114 3.20115 3.55583 3.64383 3.95894 4.00525 4.07878 4.10142 4.23875 4.26570 4.44332 4.48990 4.61716 4.63558 4.71783 4.87690 4.90386 4.94560 5.02609 5.04910 5.14841 5.32293 5.36345 5.39573 5.44123 5.58420 5.66704 5.85605 5.92833 6.22251 6.31934 6.47863 6.54023 6.93782 7.23520 7.45638 8.98186 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.004200 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.245445 B = 6664.937053 C = 7272.042869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.157 3.843 3 N -0.451 5.451 4 H 0.457 0.543 5 N -0.314 5.314 6 C 0.089 3.911 7 C -0.317 4.317 8 C 0.594 3.406 9 O -0.584 6.584 10 N -0.601 5.601 11 C 0.111 3.889 12 C -0.112 4.112 13 C -0.073 4.073 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.068 0.932 17 C -0.003 4.003 18 N -0.938 5.938 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.266 1.266 23 C -0.121 4.121 24 C 0.120 3.880 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.210 0.790 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.066 0.934 34 H -0.013 1.013 35 H -0.018 1.018 36 H 0.260 0.740 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 14.178 15.209 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.023 3.977 3 N -0.159 5.159 4 H 0.305 0.695 5 N -0.135 5.135 6 C -0.098 4.098 7 C -0.332 4.332 8 C 0.384 3.616 9 O -0.465 6.465 10 N -0.333 5.333 11 C -0.011 4.011 12 C -0.151 4.151 13 C -0.091 4.091 14 C -0.005 4.005 15 C -0.564 4.564 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.579 5.579 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.160 4.160 24 C -0.002 4.002 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.226 0.774 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.001 0.999 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.658 14.989 15.402 21.502 hybrid contribution -0.203 -0.689 -1.185 1.386 sum -0.861 14.299 14.217 20.183 Atomic orbital electron populations 1.20633 0.84629 1.04902 1.05014 1.21768 0.95680 0.86530 0.93755 1.46119 1.03520 1.09026 1.57262 0.69543 1.77124 0.96979 1.13473 1.25898 1.24385 0.97393 0.91842 0.96186 1.20003 0.94272 0.93065 1.25865 1.17557 0.81143 0.84570 0.78316 1.90702 1.29382 1.81399 1.45014 1.48019 1.36875 1.07227 1.41165 1.21973 0.89987 1.01023 0.88093 1.21699 1.01540 0.95406 0.96418 1.21044 0.97253 0.95660 0.95173 1.19019 0.95218 0.93980 0.92255 1.21655 1.00345 1.38042 0.96384 0.91408 1.25955 0.99039 0.95141 0.99851 1.70109 1.30430 1.42092 1.15283 0.85589 0.79688 0.78886 0.77425 1.19089 1.21548 1.19098 1.21904 0.98132 1.00991 0.94932 1.21586 1.02008 0.79926 0.96662 0.88259 0.87605 0.90807 0.77355 0.88427 0.89134 0.90699 0.94242 0.91534 0.99502 0.99938 0.93105 0.90903 0.93786 0.89669 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 9.90 71.24 0.71 -0.71 16 2 C 0.16 3.13 7.29 42.14 0.31 3.44 16 3 N -0.45 -7.53 7.29 -46.79 -0.34 -7.88 16 4 H 0.46 4.17 8.96 -213.42 -1.91 2.26 16 5 N -0.31 -6.75 12.63 -56.28 -0.71 -7.46 16 6 C 0.09 1.90 9.63 85.65 0.82 2.73 16 7 C -0.32 -7.79 5.20 -20.15 -0.10 -7.89 16 8 C 0.59 17.56 7.31 86.66 0.63 18.19 16 9 O -0.58 -20.39 15.82 -4.02 -0.06 -20.45 16 10 N -0.60 -16.92 2.98 -823.62 -2.45 -19.37 16 11 C 0.11 2.85 5.43 86.22 0.47 3.32 16 12 C -0.11 -3.83 5.17 30.53 0.16 -3.68 16 13 C -0.07 -2.79 2.10 -10.76 -0.02 -2.81 16 14 C 0.03 1.66 4.45 29.85 0.13 1.79 16 15 C -0.53 -28.62 8.39 25.60 0.21 -28.40 16 16 H 0.07 3.44 7.05 -2.91 -0.02 3.42 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 19 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C -0.12 -4.09 5.36 30.67 0.16 -3.92 16 24 C 0.12 3.43 6.44 86.36 0.56 3.98 16 25 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.47 7.72 -2.39 -0.02 1.45 16 28 H 0.21 3.39 7.35 -2.91 -0.02 3.37 16 29 H 0.10 2.25 4.81 -2.39 -0.01 2.24 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.69 6.91 -2.39 -0.02 2.67 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 34 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 2.46 6.99 -2.38 -0.02 2.45 16 Total: -1.00 -72.11 324.53 2.38 -69.73 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -0.86 Total: 10.39 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 4.50 Total: -13.67 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.22 Total: -91.45 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -72.11 2.38 -69.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.338 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds