Wall clock time and date at job start Mon Mar 30 2020 02:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35035 * 126.38278 * 2 1 4 4 H 0.96999 * 124.88455 * 359.96037 * 3 2 1 5 5 N 1.28469 * 110.23312 * 179.97438 * 3 2 1 6 6 C 1.31815 * 110.06865 * 359.71348 * 5 3 2 7 7 C 1.47706 * 126.51564 * 180.31454 * 6 5 3 8 8 O 1.21578 * 119.99779 * 186.51323 * 7 6 5 9 9 N 1.34775 * 120.00157 * 6.51383 * 7 6 5 10 10 C 1.46921 * 120.63390 * 6.71140 * 9 7 6 11 11 C 1.53626 * 108.54365 * 126.36710 * 10 9 7 12 12 C 1.53037 * 109.23965 * 54.86091 * 11 10 9 13 13 C 1.50705 * 109.44801 * 178.49578 * 12 11 10 14 14 H 1.07995 * 119.99728 * 120.06310 * 13 12 11 15 15 C 1.37874 * 120.00118 * 300.06053 * 13 12 11 16 16 N 1.31521 * 119.99576 * 359.97438 * 15 13 12 17 17 Si 1.86789 * 120.00069 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47331 * 90.00120 * 17 15 13 19 19 H 1.48499 * 109.47231 * 209.99932 * 17 15 13 20 20 H 1.48498 * 109.47390 * 329.99825 * 17 15 13 21 21 C 1.53045 * 109.53873 * 298.50903 * 12 11 10 22 22 C 1.46934 * 120.62819 * 186.99214 * 9 7 6 23 23 C 1.35364 * 126.38843 * 179.97438 * 2 1 3 24 24 C 1.50702 * 127.24661 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.47253 * 270.02489 * 1 2 3 26 26 H 1.08997 * 109.46979 * 30.02332 * 1 2 3 27 27 H 1.09000 * 109.47009 * 150.02910 * 1 2 3 28 28 H 1.09002 * 109.59112 * 246.20606 * 10 9 7 29 29 H 1.09002 * 109.58223 * 6.62963 * 10 9 7 30 30 H 1.09004 * 109.63343 * 294.86746 * 11 10 9 31 31 H 1.08996 * 109.42824 * 174.72695 * 11 10 9 32 32 H 1.09000 * 109.46101 * 58.52687 * 12 11 10 33 33 H 0.97002 * 119.99334 * 179.97438 * 16 15 13 34 34 H 1.08998 * 109.49520 * 301.41765 * 21 12 11 35 35 H 1.08997 * 109.52066 * 181.33253 * 21 12 11 36 36 H 1.08991 * 109.58831 * 353.37673 * 22 9 7 37 37 H 1.09004 * 109.58298 * 113.66095 * 22 9 7 38 38 H 1.08996 * 109.46937 * 90.02683 * 24 23 2 39 39 H 1.08995 * 109.47155 * 330.02601 * 24 23 2 40 40 H 1.09001 * 109.46701 * 210.01867 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9965 2.0057 -0.0006 5 7 3.5420 0.7298 0.0005 6 6 3.6321 -0.5853 0.0071 7 6 4.8765 -1.3809 0.0164 8 8 4.8256 -2.5903 -0.0976 9 7 6.0684 -0.7664 0.1512 10 6 6.1404 0.6731 0.4363 11 6 7.0140 0.8811 1.6828 12 6 8.3743 0.2157 1.4621 13 6 9.2483 0.4486 2.6675 14 1 9.6278 -0.3917 3.2298 15 6 9.5635 1.7345 3.0524 16 7 9.1018 2.7578 2.3673 17 14 10.6462 2.0231 4.5469 18 1 12.0697 2.0656 4.1262 19 1 10.2792 3.3142 5.1821 20 1 10.4506 0.9192 5.5206 21 6 8.1809 -1.2883 1.2555 22 6 7.3205 -1.5221 0.0098 23 6 2.3101 -1.0897 0.0005 24 6 1.8855 -2.5357 0.0006 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 6.5825 1.1924 -0.4140 29 1 5.1382 1.0593 0.6222 30 1 6.5270 0.4349 2.5500 31 1 7.1544 1.9485 1.8531 32 1 8.8498 0.6452 0.5803 33 1 9.3233 3.6624 2.6383 34 1 7.6830 -1.7141 2.1266 35 1 9.1517 -1.7654 1.1218 36 1 7.0972 -2.5846 -0.0861 37 1 7.8557 -1.1798 -0.8760 38 1 1.7839 -2.8846 -1.0270 39 1 0.9288 -2.6334 0.5137 40 1 2.6367 -3.1348 0.5151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:26 Heat of formation + Delta-G solvation = 32.889426 kcal Electronic energy + Delta-G solvation = -21949.224001 eV Core-core repulsion = 18765.324603 eV Total energy + Delta-G solvation = -3183.899398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.69575 -39.24713 -36.66100 -33.76278 -33.25455 -32.54405 -31.02920 -29.90462 -28.40026 -26.34075 -26.06375 -24.11870 -22.39527 -21.93679 -19.98790 -19.62076 -18.22620 -17.60350 -16.49890 -15.95788 -15.93934 -15.32569 -14.52031 -14.34013 -13.96793 -13.46347 -13.21123 -13.16327 -12.87871 -12.82542 -12.64481 -12.57120 -12.37998 -12.17636 -12.00248 -11.45767 -11.26213 -10.91631 -10.62628 -10.36995 -10.26742 -10.01274 -9.62363 -9.40534 -9.20332 -9.08746 -8.79191 -8.60585 -8.30632 -7.86175 -5.97431 -4.03409 1.72932 2.10773 2.84406 3.31138 3.37816 3.41782 3.57122 3.75026 4.45030 4.54511 4.60137 4.82320 5.22365 5.24099 5.28799 5.32403 5.56172 5.72387 5.80713 5.85348 5.95513 6.02544 6.08722 6.20712 6.22948 6.33366 6.47331 6.55870 6.70282 6.77819 6.95996 7.07499 7.16133 7.27612 7.42693 7.73551 7.89799 8.00330 8.07971 8.13940 8.47076 8.65041 9.00050 9.61072 11.07902 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.004498 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.073842 B = 6223.434738 C = 6879.226272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.003 3.997 3 N -0.387 5.387 4 H 0.442 0.558 5 N -0.248 5.248 6 C 0.001 3.999 7 C 0.594 3.406 8 O -0.550 6.550 9 N -0.585 5.585 10 C 0.083 3.917 11 C -0.120 4.120 12 C 0.047 3.953 13 C -0.511 4.511 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.122 4.122 22 C 0.112 3.888 23 C -0.148 4.148 24 C -0.075 4.075 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 -2.923 -5.864 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 N -0.100 5.100 4 H 0.286 0.714 5 N -0.083 5.083 6 C -0.159 4.159 7 C 0.380 3.620 8 O -0.428 6.428 9 N -0.316 5.316 10 C -0.039 4.039 11 C -0.159 4.159 12 C 0.028 3.972 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.161 4.161 22 C -0.010 4.010 23 C -0.158 4.158 24 C -0.132 4.132 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.317 -2.435 -5.929 17.531 hybrid contribution 0.113 0.370 0.872 0.954 sum -16.204 -2.064 -5.057 17.100 Atomic orbital electron populations 1.20310 0.86835 1.03671 1.03151 1.21172 0.95039 0.87099 1.08912 1.43443 1.03359 1.09334 1.53871 0.71364 1.73655 1.00368 1.14862 1.19368 1.21966 0.94977 0.89539 1.09456 1.16996 0.81700 0.86127 0.77184 1.90701 1.86418 1.13101 1.52579 1.48104 1.04912 1.11151 1.67473 1.22793 1.03497 0.78176 0.99450 1.22063 0.95668 1.04889 0.93281 1.18664 0.92769 0.88645 0.97092 1.21227 1.29629 0.91996 1.12032 0.92740 1.24958 0.96042 0.96246 0.96747 1.69860 1.45160 0.98368 1.39688 0.86628 0.80860 0.77501 0.83206 1.20740 1.21316 1.19995 1.21998 0.97694 1.00917 0.95449 1.21740 0.83806 0.96330 0.99128 1.20080 0.90705 0.96548 1.08484 1.20134 1.01064 0.89915 1.02125 0.90476 0.91262 0.89710 0.92486 0.87299 0.94610 0.87983 0.95504 0.93085 0.92928 0.92154 0.90251 0.92092 0.91638 0.92290 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.14 36.01 0.37 -0.15 16 2 C 0.00 0.04 7.23 -82.21 -0.59 -0.56 16 3 N -0.39 -4.43 6.83 33.50 0.23 -4.20 16 4 H 0.44 3.31 8.96 -190.44 -1.71 1.61 16 5 N -0.25 -3.88 8.70 33.42 0.29 -3.59 16 6 C 0.00 0.02 6.83 -82.76 -0.57 -0.54 16 7 C 0.59 11.74 7.69 -12.39 -0.10 11.64 16 8 O -0.55 -11.56 14.62 5.30 0.08 -11.49 16 9 N -0.59 -11.74 2.97 -173.66 -0.52 -12.26 16 10 C 0.08 1.69 6.15 -3.49 -0.02 1.67 16 11 C -0.12 -2.86 5.17 -26.39 -0.14 -2.99 16 12 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 13 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -25.10 11.31 55.43 0.63 -24.48 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.12 -2.64 5.30 -26.61 -0.14 -2.78 16 22 C 0.11 2.18 6.44 -3.71 -0.02 2.16 16 23 C -0.15 -2.10 6.24 -104.40 -0.65 -2.76 16 24 C -0.07 -0.92 9.56 36.01 0.34 -0.57 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.48 7.98 -51.93 -0.41 0.07 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.11 2.10 4.15 -72.21 -0.30 1.80 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 2.66 6.03 -51.93 -0.31 2.35 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.55 7.99 -51.93 -0.42 0.14 16 40 H 0.08 1.19 6.84 -51.93 -0.36 0.84 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -31.99 320.24 -8.80 -40.79 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.21 Total: 0.78 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.10 Total: -6.66 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.63 Total: -44.52 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.99 -8.80 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.680 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds