Wall clock time and date at job start Mon Mar 30 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35035 * 126.38278 * 2 1 4 4 H 0.96999 * 124.88455 * 359.96037 * 3 2 1 5 5 N 1.28469 * 110.23312 * 179.97438 * 3 2 1 6 6 C 1.31815 * 110.06865 * 359.71348 * 5 3 2 7 7 C 1.47706 * 126.51564 * 180.31454 * 6 5 3 8 8 O 1.21578 * 119.99779 * 186.51323 * 7 6 5 9 9 N 1.34775 * 120.00157 * 6.51383 * 7 6 5 10 10 C 1.46921 * 120.63390 * 6.71140 * 9 7 6 11 11 C 1.53626 * 108.54365 * 126.36710 * 10 9 7 12 12 C 1.53037 * 109.23965 * 54.86091 * 11 10 9 13 13 C 1.50705 * 109.44801 * 178.49578 * 12 11 10 14 14 H 1.07995 * 119.99728 * 120.06310 * 13 12 11 15 15 C 1.37874 * 120.00118 * 300.06053 * 13 12 11 16 16 N 1.31521 * 119.99576 * 359.97438 * 15 13 12 17 17 Si 1.86789 * 120.00069 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47331 * 90.00120 * 17 15 13 19 19 H 1.48499 * 109.47231 * 209.99932 * 17 15 13 20 20 H 1.48498 * 109.47390 * 329.99825 * 17 15 13 21 21 C 1.53045 * 109.53873 * 298.50903 * 12 11 10 22 22 C 1.46934 * 120.62819 * 186.99214 * 9 7 6 23 23 C 1.35364 * 126.38843 * 179.97438 * 2 1 3 24 24 C 1.50702 * 127.24661 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.47253 * 270.02489 * 1 2 3 26 26 H 1.08997 * 109.46979 * 30.02332 * 1 2 3 27 27 H 1.09000 * 109.47009 * 150.02910 * 1 2 3 28 28 H 1.09002 * 109.59112 * 246.20606 * 10 9 7 29 29 H 1.09002 * 109.58223 * 6.62963 * 10 9 7 30 30 H 1.09004 * 109.63343 * 294.86746 * 11 10 9 31 31 H 1.08996 * 109.42824 * 174.72695 * 11 10 9 32 32 H 1.09000 * 109.46101 * 58.52687 * 12 11 10 33 33 H 0.97002 * 119.99334 * 179.97438 * 16 15 13 34 34 H 1.08998 * 109.49520 * 301.41765 * 21 12 11 35 35 H 1.08997 * 109.52066 * 181.33253 * 21 12 11 36 36 H 1.08991 * 109.58831 * 353.37673 * 22 9 7 37 37 H 1.09004 * 109.58298 * 113.66095 * 22 9 7 38 38 H 1.08996 * 109.46937 * 90.02683 * 24 23 2 39 39 H 1.08995 * 109.47155 * 330.02601 * 24 23 2 40 40 H 1.09001 * 109.46701 * 210.01867 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9965 2.0057 -0.0006 5 7 3.5420 0.7298 0.0005 6 6 3.6321 -0.5853 0.0071 7 6 4.8765 -1.3809 0.0164 8 8 4.8256 -2.5903 -0.0976 9 7 6.0684 -0.7664 0.1512 10 6 6.1404 0.6731 0.4363 11 6 7.0140 0.8811 1.6828 12 6 8.3743 0.2157 1.4621 13 6 9.2483 0.4486 2.6675 14 1 9.6278 -0.3917 3.2298 15 6 9.5635 1.7345 3.0524 16 7 9.1018 2.7578 2.3673 17 14 10.6462 2.0231 4.5469 18 1 12.0697 2.0656 4.1262 19 1 10.2792 3.3142 5.1821 20 1 10.4506 0.9192 5.5206 21 6 8.1809 -1.2883 1.2555 22 6 7.3205 -1.5221 0.0098 23 6 2.3101 -1.0897 0.0005 24 6 1.8855 -2.5357 0.0006 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 6.5825 1.1924 -0.4140 29 1 5.1382 1.0593 0.6222 30 1 6.5270 0.4349 2.5500 31 1 7.1544 1.9485 1.8531 32 1 8.8498 0.6452 0.5803 33 1 9.3233 3.6624 2.6383 34 1 7.6830 -1.7141 2.1266 35 1 9.1517 -1.7654 1.1218 36 1 7.0972 -2.5846 -0.0861 37 1 7.8557 -1.1798 -0.8760 38 1 1.7839 -2.8846 -1.0270 39 1 0.9288 -2.6334 0.5137 40 1 2.6367 -3.1348 0.5151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259973440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:25 Heat of formation + Delta-G solvation = 12.850288 kcal Electronic energy + Delta-G solvation = -21950.092963 eV Core-core repulsion = 18765.324603 eV Total energy + Delta-G solvation = -3184.768360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.75481 -40.82167 -38.37745 -35.41874 -34.41858 -33.79399 -32.72265 -31.62877 -29.33278 -28.10685 -27.02415 -25.70439 -24.14064 -23.55506 -21.34700 -20.96446 -19.77496 -18.74527 -18.37133 -17.49918 -17.07051 -16.89196 -16.48021 -15.81111 -15.08352 -14.92608 -14.73132 -14.55902 -14.20381 -14.05604 -13.90429 -13.82393 -13.55599 -13.34529 -13.21947 -12.98038 -12.83503 -12.69231 -12.46049 -12.14943 -11.99357 -11.72062 -11.40808 -11.08875 -11.00113 -10.62234 -10.39440 -10.30232 -9.63549 -9.50264 -8.07819 -6.21790 0.49418 1.11331 1.40993 1.42012 1.51939 1.83320 2.20997 2.33962 2.43992 3.18209 3.34373 3.75703 3.94206 4.15745 4.26384 4.31803 4.38062 4.41809 4.51761 4.57929 4.78198 4.82151 4.88943 4.92587 4.95795 4.99585 5.11879 5.13712 5.18466 5.23286 5.24900 5.42031 5.53380 5.62842 5.65778 5.97011 6.10113 6.20000 6.37770 6.45308 6.86428 6.88388 7.15648 7.45701 8.95894 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.004498 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.073842 B = 6223.434738 C = 6879.226272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.030 3.970 3 N -0.368 5.368 4 H 0.460 0.540 5 N -0.273 5.273 6 C -0.036 4.036 7 C 0.590 3.410 8 O -0.569 6.569 9 N -0.593 5.593 10 C 0.098 3.902 11 C -0.109 4.109 12 C 0.044 3.956 13 C -0.536 4.536 14 H 0.049 0.951 15 C 0.016 3.984 16 N -0.913 5.913 17 Si 0.952 3.048 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.273 1.273 21 C -0.112 4.112 22 C 0.116 3.884 23 C -0.174 4.174 24 C -0.070 4.070 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.126 0.874 30 H 0.019 0.981 31 H 0.078 0.922 32 H 0.003 0.997 33 H 0.261 0.739 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.224 -2.555 -5.895 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 N -0.084 5.084 4 H 0.308 0.692 5 N -0.109 5.109 6 C -0.194 4.194 7 C 0.378 3.622 8 O -0.448 6.448 9 N -0.324 5.324 10 C -0.025 4.025 11 C -0.148 4.148 12 C 0.026 3.974 13 C -0.574 4.574 14 H 0.067 0.933 15 C -0.183 4.183 16 N -0.553 5.553 17 Si 0.778 3.222 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.151 4.151 22 C -0.006 4.006 23 C -0.184 4.184 24 C -0.128 4.128 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.038 0.962 31 H 0.096 0.904 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.556 -2.059 -5.967 19.601 hybrid contribution 0.710 0.291 0.866 1.157 sum -17.847 -1.768 -5.101 18.646 Atomic orbital electron populations 1.20546 0.82896 1.05654 1.04770 1.21793 0.96949 0.85542 1.05364 1.43518 1.02312 1.10686 1.51898 0.69170 1.73390 1.02642 1.14329 1.20554 1.21779 0.94988 0.90317 1.12320 1.17399 0.82305 0.86228 0.76274 1.90671 1.86850 1.13971 1.53342 1.48135 1.05389 1.10866 1.68053 1.22596 1.03637 0.78718 0.97526 1.21831 0.95704 1.02871 0.94372 1.18632 0.92792 0.90754 0.95246 1.21555 1.30558 0.92214 1.13059 0.93301 1.25682 0.97224 0.96003 0.99368 1.69980 1.45798 0.98636 1.40864 0.85650 0.79240 0.77416 0.79894 1.20090 1.20729 1.19755 1.21846 0.98582 0.98542 0.96085 1.21687 0.83666 0.96872 0.98389 1.20427 0.89926 0.98281 1.09745 1.20113 1.01619 0.88534 1.02485 0.88830 0.88659 0.88416 0.92655 0.85745 0.96202 0.90410 0.97847 0.92937 0.94107 0.91236 0.89512 0.90902 0.91128 0.89080 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.14 71.24 0.72 0.08 16 2 C 0.03 0.57 7.23 41.40 0.30 0.87 16 3 N -0.37 -7.52 6.83 -47.93 -0.33 -7.85 16 4 H 0.46 5.50 8.96 -219.99 -1.97 3.53 16 5 N -0.27 -8.28 8.70 -48.18 -0.42 -8.70 16 6 C -0.04 -1.21 6.83 42.45 0.29 -0.92 16 7 C 0.59 23.63 7.69 86.75 0.67 24.30 16 8 O -0.57 -24.33 14.62 -3.96 -0.06 -24.39 16 9 N -0.59 -24.19 2.97 -821.62 -2.44 -26.63 16 10 C 0.10 4.06 6.15 86.51 0.53 4.59 16 11 C -0.11 -5.35 5.17 30.82 0.16 -5.19 16 12 C 0.04 2.28 2.06 -11.51 -0.02 2.25 16 13 C -0.54 -30.12 8.56 25.60 0.22 -29.90 16 14 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 15 C 0.02 0.89 5.30 84.65 0.45 1.34 16 16 N -0.91 -52.28 11.31 21.45 0.24 -52.04 16 17 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 C -0.11 -4.95 5.30 30.67 0.16 -4.79 16 22 C 0.12 4.57 6.44 86.36 0.56 5.13 16 23 C -0.17 -4.66 6.24 -19.72 -0.12 -4.78 16 24 C -0.07 -1.62 9.56 71.24 0.68 -0.94 16 25 H 0.09 0.56 8.14 -2.38 -0.02 0.55 16 26 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.10 0.63 7.98 -2.39 -0.02 0.61 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.13 4.84 4.15 -28.62 -0.12 4.72 16 30 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.08 4.20 6.03 -2.39 -0.01 4.18 16 32 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.09 3.30 7.00 -2.39 -0.02 3.28 16 37 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.45 7.99 -2.39 -0.02 1.43 16 40 H 0.05 1.52 6.84 -2.39 -0.02 1.51 16 Total: -1.00 -70.96 320.24 2.59 -68.37 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -1.02 Total: 13.21 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 4.59 Total: -7.96 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -2.94 Total: -95.22 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.39 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.96 2.59 -68.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.218 kcal (2) G-P(sol) polarization free energy of solvation -70.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds