Wall clock time and date at job start Mon Mar 30 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39668 * 126.07202 * 2 1 4 4 C 1.38411 * 105.36323 * 180.02562 * 3 2 1 5 5 C 1.47161 * 126.88603 * 179.97438 * 4 3 2 6 6 O 1.21622 * 120.00222 * 331.72167 * 5 4 3 7 7 N 1.34778 * 119.99852 * 151.72099 * 5 4 3 8 8 C 1.46930 * 120.63104 * 359.94332 * 7 5 4 9 9 C 1.52757 * 109.01134 * 233.58812 * 8 7 5 10 10 C 1.53040 * 109.38295 * 305.58948 * 9 8 7 11 11 C 1.52994 * 109.46434 * 181.26062 * 10 9 8 12 12 C 1.50705 * 109.47029 * 64.92771 * 11 10 9 13 13 H 1.07999 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99794 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00159 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99901 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46965 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46969 * 119.99764 * 16 14 12 19 19 H 1.48489 * 109.47052 * 239.99822 * 16 14 12 20 20 C 1.53042 * 109.53784 * 61.23865 * 10 9 8 21 21 C 1.46920 * 120.63217 * 180.23074 * 7 5 4 22 22 N 1.36603 * 106.22749 * 0.26646 * 4 3 2 23 23 H 0.97004 * 125.18664 * 179.71044 * 22 4 3 24 24 N 1.28448 * 109.62101 * 359.55064 * 22 4 3 25 25 H 1.09003 * 109.47492 * 89.99614 * 1 2 3 26 26 H 1.08997 * 109.47765 * 209.99796 * 1 2 3 27 27 H 1.09004 * 109.47123 * 329.99830 * 1 2 3 28 28 H 1.08002 * 127.31933 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.58329 * 353.42157 * 8 7 5 30 30 H 1.08996 * 109.58640 * 113.84516 * 8 7 5 31 31 H 1.08994 * 109.56903 * 185.55349 * 9 8 7 32 32 H 1.09002 * 109.35844 * 65.49639 * 9 8 7 33 33 H 1.09005 * 109.45996 * 301.21865 * 10 9 8 34 34 H 1.09002 * 109.47520 * 184.93217 * 11 10 9 35 35 H 1.09003 * 109.46789 * 304.93168 * 11 10 9 36 36 H 0.96998 * 119.99624 * 179.97438 * 15 14 12 37 37 H 1.09006 * 109.49801 * 178.68617 * 20 10 9 38 38 H 1.08997 * 109.49993 * 58.59057 * 20 10 9 39 39 H 1.09008 * 109.58353 * 246.15591 * 21 7 5 40 40 H 1.09001 * 109.58855 * 6.43217 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3293 1.1289 0.0000 4 6 3.6240 0.6395 -0.0006 5 6 4.8664 1.4281 -0.0014 6 8 4.8825 2.5370 -0.5005 7 7 5.9865 0.9215 0.5511 8 6 5.9824 -0.4162 1.1591 9 6 6.5164 -0.3156 2.5867 10 6 7.8880 0.3631 2.5693 11 6 8.4386 0.4366 3.9948 12 6 8.6884 -0.9577 4.5093 13 1 8.4760 -1.8109 3.8821 14 6 9.1879 -1.1442 5.7808 15 7 9.4470 -0.1052 6.5445 16 14 9.4982 -2.8724 6.4183 17 1 9.1295 -3.8596 5.3720 18 1 10.9361 -3.0244 6.7568 19 1 8.6764 -3.1070 7.6326 20 6 7.7518 1.7779 2.0018 21 6 7.2332 1.6987 0.5625 22 7 3.5172 -0.7224 -0.0070 23 1 4.2639 -1.3416 -0.0129 24 7 2.2774 -1.0579 -0.0007 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.0206 2.1639 -0.0004 29 1 4.9646 -0.8059 1.1778 30 1 6.6206 -1.0830 0.5793 31 1 6.6102 -1.3144 3.0127 32 1 5.8263 0.2744 3.1899 33 1 8.5709 -0.2141 1.9458 34 1 9.3736 0.9968 3.9949 35 1 7.7151 0.9371 4.6384 36 1 9.7981 -0.2365 7.4391 37 1 8.7250 2.2690 2.0114 38 1 7.0501 2.3481 2.6105 39 1 7.9756 1.2079 -0.0669 40 1 7.0411 2.7032 0.1854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260021802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:48 Heat of formation + Delta-G solvation = 32.978437 kcal Electronic energy + Delta-G solvation = -21545.264824 eV Core-core repulsion = 18361.369286 eV Total energy + Delta-G solvation = -3183.895538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.79209 -39.89303 -37.49938 -34.35036 -33.32844 -32.23717 -31.36372 -30.56540 -28.23507 -28.01495 -25.19881 -23.32839 -23.08622 -21.47265 -20.76852 -20.45469 -19.32236 -17.77684 -16.54611 -16.36597 -15.93529 -15.85728 -14.87596 -14.58590 -14.17822 -13.88549 -13.82502 -13.43439 -13.23356 -13.14087 -12.94646 -12.92197 -12.56105 -12.30754 -11.91165 -11.30311 -11.11264 -10.95073 -10.88938 -10.79658 -10.54919 -10.24516 -10.09797 -9.78366 -9.42724 -9.26679 -9.19666 -9.04472 -8.56861 -8.42125 -6.06509 -4.09116 1.19372 2.38060 2.59004 2.76225 3.16514 3.25413 3.33733 3.35724 4.19358 4.39288 4.45783 4.76277 4.88833 5.15203 5.18028 5.29437 5.30444 5.38119 5.43923 5.45217 5.54233 5.59937 5.61971 5.78350 5.83490 5.89156 6.19330 6.23961 6.34254 6.37933 6.49212 6.76877 6.80897 6.86281 6.99177 7.26824 7.59042 7.72566 7.80669 7.92428 7.99364 8.33959 8.97394 9.55261 11.04682 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021470 B = 0.004139 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.857014 B = 6763.252170 C = 7643.501955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.025 3.975 3 C -0.160 4.160 4 C -0.025 4.025 5 C 0.588 3.412 6 O -0.529 6.529 7 N -0.599 5.599 8 C 0.084 3.916 9 C -0.118 4.118 10 C -0.081 4.081 11 C 0.027 3.973 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.131 4.131 21 C 0.113 3.887 22 N -0.381 5.381 23 H 0.448 0.552 24 N -0.277 5.277 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.163 0.837 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.298 0.173 -13.328 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 C -0.189 4.189 4 C -0.153 4.153 5 C 0.374 3.626 6 O -0.405 6.405 7 N -0.331 5.331 8 C -0.039 4.039 9 C -0.156 4.156 10 C -0.099 4.099 11 C -0.010 4.010 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.169 4.169 21 C -0.008 4.008 22 N -0.102 5.102 23 H 0.299 0.701 24 N -0.110 5.110 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.180 0.820 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.218 -0.325 -13.435 18.162 hybrid contribution 0.779 -0.502 0.640 1.126 sum -11.439 -0.827 -12.795 17.183 Atomic orbital electron populations 1.20094 0.86342 1.03340 1.02783 1.22072 0.97283 0.88639 1.05312 1.22027 0.89550 1.00517 1.06780 1.21727 0.96468 0.84537 1.12602 1.17064 0.81395 0.85444 0.78721 1.90811 1.83895 1.19408 1.46352 1.48120 1.10347 1.18135 1.56538 1.22291 1.01299 0.83199 0.97116 1.21813 0.97839 1.03331 0.92585 1.21203 0.95130 0.92999 1.00586 1.19127 0.95950 0.97137 0.88749 1.21250 1.42762 0.92550 0.99101 0.92579 1.25025 0.95669 0.96638 0.97095 1.69969 1.44848 1.29302 1.09181 0.86589 0.77916 0.84903 0.78904 1.19779 1.21036 1.21052 1.22049 1.01304 0.99419 0.94099 1.21769 0.83806 0.96731 0.98531 1.44446 1.06567 1.05560 1.53598 0.70121 1.73096 0.89930 1.27750 1.20251 0.90794 0.90883 0.90454 0.81966 0.90746 0.90669 0.89326 0.92004 0.92169 0.96443 0.96576 0.93026 0.90724 0.91858 0.91312 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.45 36.00 0.38 -0.15 16 2 C 0.03 0.29 7.22 -82.47 -0.60 -0.30 16 3 C -0.16 -1.99 10.89 -38.98 -0.42 -2.42 16 4 C -0.02 -0.33 6.46 -82.06 -0.53 -0.86 16 5 C 0.59 8.81 7.66 -12.64 -0.10 8.71 16 6 O -0.53 -9.33 16.43 5.26 0.09 -9.24 16 7 N -0.60 -8.33 2.98 -174.40 -0.52 -8.85 16 8 C 0.08 1.06 5.58 -3.93 -0.02 1.04 16 9 C -0.12 -1.93 5.17 -26.84 -0.14 -2.06 16 10 C -0.08 -1.47 2.10 -90.58 -0.19 -1.66 16 11 C 0.03 0.66 4.45 -27.88 -0.12 0.53 16 12 C -0.52 -13.67 8.39 -34.44 -0.29 -13.96 16 13 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.13 -2.07 5.36 -26.61 -0.14 -2.22 16 21 C 0.11 1.57 6.43 -3.72 -0.02 1.55 16 22 N -0.38 -4.49 5.64 33.48 0.19 -4.30 16 23 H 0.45 4.24 6.44 -190.45 -1.23 3.01 16 24 N -0.28 -3.48 12.14 33.63 0.41 -3.07 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.07 0.84 3.88 -51.93 -0.20 0.64 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.54 6.91 -51.93 -0.36 1.18 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.09 1.28 7.00 -51.93 -0.36 0.91 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -31.72 324.17 -8.26 -39.98 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.73 Total: 0.44 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -2.30 Total: -10.33 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.81 Total: -41.61 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.72 -8.26 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.958 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds