Wall clock time and date at job start Mon Mar 30 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39668 * 126.07202 * 2 1 4 4 C 1.38411 * 105.36323 * 180.02562 * 3 2 1 5 5 C 1.47161 * 126.88603 * 179.97438 * 4 3 2 6 6 O 1.21622 * 120.00222 * 331.72167 * 5 4 3 7 7 N 1.34778 * 119.99852 * 151.72099 * 5 4 3 8 8 C 1.46930 * 120.63104 * 359.94332 * 7 5 4 9 9 C 1.52757 * 109.01134 * 233.58812 * 8 7 5 10 10 C 1.53040 * 109.38295 * 305.58948 * 9 8 7 11 11 C 1.52994 * 109.46434 * 181.26062 * 10 9 8 12 12 C 1.50705 * 109.47029 * 64.92771 * 11 10 9 13 13 H 1.07999 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99794 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00159 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99901 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46965 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46969 * 119.99764 * 16 14 12 19 19 H 1.48489 * 109.47052 * 239.99822 * 16 14 12 20 20 C 1.53042 * 109.53784 * 61.23865 * 10 9 8 21 21 C 1.46920 * 120.63217 * 180.23074 * 7 5 4 22 22 N 1.36603 * 106.22749 * 0.26646 * 4 3 2 23 23 H 0.97004 * 125.18664 * 179.71044 * 22 4 3 24 24 N 1.28448 * 109.62101 * 359.55064 * 22 4 3 25 25 H 1.09003 * 109.47492 * 89.99614 * 1 2 3 26 26 H 1.08997 * 109.47765 * 209.99796 * 1 2 3 27 27 H 1.09004 * 109.47123 * 329.99830 * 1 2 3 28 28 H 1.08002 * 127.31933 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.58329 * 353.42157 * 8 7 5 30 30 H 1.08996 * 109.58640 * 113.84516 * 8 7 5 31 31 H 1.08994 * 109.56903 * 185.55349 * 9 8 7 32 32 H 1.09002 * 109.35844 * 65.49639 * 9 8 7 33 33 H 1.09005 * 109.45996 * 301.21865 * 10 9 8 34 34 H 1.09002 * 109.47520 * 184.93217 * 11 10 9 35 35 H 1.09003 * 109.46789 * 304.93168 * 11 10 9 36 36 H 0.96998 * 119.99624 * 179.97438 * 15 14 12 37 37 H 1.09006 * 109.49801 * 178.68617 * 20 10 9 38 38 H 1.08997 * 109.49993 * 58.59057 * 20 10 9 39 39 H 1.09008 * 109.58353 * 246.15591 * 21 7 5 40 40 H 1.09001 * 109.58855 * 6.43217 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3293 1.1289 0.0000 4 6 3.6240 0.6395 -0.0006 5 6 4.8664 1.4281 -0.0014 6 8 4.8825 2.5370 -0.5005 7 7 5.9865 0.9215 0.5511 8 6 5.9824 -0.4162 1.1591 9 6 6.5164 -0.3156 2.5867 10 6 7.8880 0.3631 2.5693 11 6 8.4386 0.4366 3.9948 12 6 8.6884 -0.9577 4.5093 13 1 8.4760 -1.8109 3.8821 14 6 9.1879 -1.1442 5.7808 15 7 9.4470 -0.1052 6.5445 16 14 9.4982 -2.8724 6.4183 17 1 9.1295 -3.8596 5.3720 18 1 10.9361 -3.0244 6.7568 19 1 8.6764 -3.1070 7.6326 20 6 7.7518 1.7779 2.0018 21 6 7.2332 1.6987 0.5625 22 7 3.5172 -0.7224 -0.0070 23 1 4.2639 -1.3416 -0.0129 24 7 2.2774 -1.0579 -0.0007 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.0206 2.1639 -0.0004 29 1 4.9646 -0.8059 1.1778 30 1 6.6206 -1.0830 0.5793 31 1 6.6102 -1.3144 3.0127 32 1 5.8263 0.2744 3.1899 33 1 8.5709 -0.2141 1.9458 34 1 9.3736 0.9968 3.9949 35 1 7.7151 0.9371 4.6384 36 1 9.7981 -0.2365 7.4391 37 1 8.7250 2.2690 2.0114 38 1 7.0501 2.3481 2.6105 39 1 7.9756 1.2079 -0.0669 40 1 7.0411 2.7032 0.1854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260021802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:48 Heat of formation + Delta-G solvation = 13.255395 kcal Electronic energy + Delta-G solvation = -21546.120080 eV Core-core repulsion = 18361.369286 eV Total energy + Delta-G solvation = -3184.750793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.72866 -41.07236 -38.82774 -35.87942 -34.49034 -33.81262 -32.52070 -31.63999 -29.90238 -28.79927 -26.75216 -24.71435 -24.37520 -22.82319 -21.80438 -21.51113 -20.64306 -18.89459 -18.42623 -17.61142 -17.05971 -16.85770 -16.52481 -15.96193 -15.32837 -15.28020 -14.84817 -14.78201 -14.46938 -14.35129 -14.01169 -13.94281 -13.62906 -13.40441 -13.24808 -13.03706 -12.77648 -12.57860 -12.34306 -12.20794 -11.83408 -11.78909 -11.44964 -11.28614 -11.06873 -10.88035 -10.54287 -10.28079 -10.08107 -9.76764 -8.17366 -6.26877 0.16924 1.40430 1.41768 1.46030 1.53239 1.60764 1.71994 2.12739 2.41864 3.16609 3.18236 3.59041 3.68812 3.96388 3.98319 4.07134 4.08983 4.29358 4.32563 4.39338 4.57356 4.68344 4.72062 4.82022 4.87371 4.91453 4.97792 5.03521 5.10923 5.24403 5.27933 5.33233 5.44176 5.53006 5.55087 5.78621 5.88143 5.91259 6.14217 6.27538 6.79173 6.90628 6.94969 7.42298 8.94789 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021470 B = 0.004139 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.857014 B = 6763.252170 C = 7643.501955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.023 3.977 3 C -0.168 4.168 4 C -0.041 4.041 5 C 0.589 3.411 6 O -0.561 6.561 7 N -0.598 5.598 8 C 0.093 3.907 9 C -0.113 4.113 10 C -0.073 4.073 11 C 0.031 3.969 12 C -0.525 4.525 13 H 0.069 0.931 14 C -0.004 4.004 15 N -0.937 5.937 16 Si 0.959 3.041 17 H -0.256 1.256 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.124 4.124 21 C 0.119 3.881 22 N -0.373 5.373 23 H 0.456 0.544 24 N -0.289 5.289 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.172 0.828 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.071 0.929 34 H -0.011 1.011 35 H -0.017 1.017 36 H 0.260 0.740 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.263 -1.627 -14.841 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 C -0.197 4.197 4 C -0.170 4.170 5 C 0.376 3.624 6 O -0.438 6.438 7 N -0.329 5.329 8 C -0.029 4.029 9 C -0.151 4.151 10 C -0.091 4.091 11 C -0.006 4.006 12 C -0.563 4.563 13 H 0.087 0.913 14 C -0.201 4.201 15 N -0.578 5.578 16 Si 0.784 3.216 17 H -0.179 1.179 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.162 4.162 21 C -0.002 4.002 22 N -0.096 5.096 23 H 0.309 0.691 24 N -0.123 5.123 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.189 0.811 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.007 0.993 35 H 0.001 0.999 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.181 -2.156 -14.960 20.055 hybrid contribution 1.060 0.106 1.142 1.561 sum -12.121 -2.050 -13.819 18.495 Atomic orbital electron populations 1.20252 0.83877 1.04383 1.04042 1.22639 0.98847 0.87873 1.04114 1.22326 0.89548 1.01425 1.06375 1.21601 0.96096 0.85242 1.14021 1.17236 0.81827 0.85090 0.78200 1.90792 1.84398 1.20783 1.47874 1.48169 1.10151 1.18489 1.56140 1.22296 1.02760 0.83106 0.94754 1.21684 0.96288 1.02097 0.95032 1.21047 0.96211 0.94958 0.96905 1.19026 0.93940 0.95595 0.92007 1.21708 1.41604 0.93761 0.99272 0.91260 1.25963 0.95697 1.00765 0.97661 1.70117 1.46297 1.31811 1.09620 0.85485 0.77556 0.80111 0.78432 1.17949 1.20928 1.21043 1.21937 1.01292 0.97613 0.95341 1.21722 0.84300 0.97264 0.96938 1.44418 1.06787 1.05067 1.53286 0.69109 1.73104 0.90219 1.28265 1.20683 0.89348 0.90391 0.88881 0.81085 0.89187 0.87565 0.90067 0.93979 0.91090 0.99309 0.99908 0.93087 0.90351 0.93633 0.88830 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.45 71.23 0.74 -0.14 16 2 C 0.02 0.49 7.22 43.04 0.31 0.80 16 3 C -0.17 -3.93 10.89 22.66 0.25 -3.69 16 4 C -0.04 -1.04 6.46 40.79 0.26 -0.77 16 5 C 0.59 16.93 7.66 86.59 0.66 17.60 16 6 O -0.56 -19.38 16.43 -4.10 -0.07 -19.45 16 7 N -0.60 -15.58 2.98 -823.93 -2.45 -18.04 16 8 C 0.09 2.14 5.58 86.22 0.48 2.62 16 9 C -0.11 -3.59 5.17 30.53 0.16 -3.43 16 10 C -0.07 -2.63 2.10 -10.77 -0.02 -2.65 16 11 C 0.03 1.56 4.45 29.85 0.13 1.69 16 12 C -0.53 -27.82 8.39 25.60 0.21 -27.61 16 13 H 0.07 3.41 7.06 -2.91 -0.02 3.39 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 15 N -0.94 -56.23 13.29 21.45 0.28 -55.95 16 16 Si 0.96 42.75 29.54 68.60 2.03 44.77 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 C -0.12 -3.91 5.36 30.67 0.16 -3.74 16 21 C 0.12 3.12 6.43 86.36 0.56 3.68 16 22 N -0.37 -8.03 5.64 -47.99 -0.27 -8.30 16 23 H 0.46 7.47 6.44 -220.00 -1.42 6.06 16 24 N -0.29 -6.67 12.14 -47.50 -0.58 -7.24 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 29 H 0.09 1.82 3.88 -2.39 -0.01 1.81 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.71 6.91 -2.39 -0.02 2.70 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 34 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 36 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.09 2.40 7.00 -2.39 -0.02 2.38 16 Total: -1.00 -69.43 324.17 2.95 -66.48 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -0.37 Total: 13.12 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 4.37 Total: -15.39 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -3.02 Total: -89.53 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.07 Total: -19.45 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -69.43 2.95 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.732 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds