Wall clock time and date at job start Mon Mar 30 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35042 * 126.38496 * 2 1 4 4 H 0.96993 * 124.88430 * 359.97048 * 3 2 1 5 5 N 1.28467 * 110.22693 * 179.97438 * 3 2 1 6 6 C 1.31801 * 110.07953 * 0.02562 * 5 3 2 7 7 C 1.47708 * 126.52346 * 179.97438 * 6 5 3 8 8 O 1.21564 * 120.00316 * 175.20029 * 7 6 5 9 9 N 1.34777 * 119.99787 * 355.19988 * 7 6 5 10 10 C 1.46507 * 119.99875 * 5.54644 * 9 7 6 11 11 C 1.50700 * 109.47243 * 275.41115 * 10 9 7 12 12 H 1.08001 * 119.99709 * 359.97438 * 11 10 9 13 13 C 1.37868 * 120.00002 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00158 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47147 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47223 * 119.99987 * 15 13 11 18 18 H 1.48503 * 109.47476 * 239.99918 * 15 13 11 19 19 C 1.46501 * 120.00189 * 185.54876 * 9 7 6 20 20 C 1.52998 * 109.47097 * 265.02424 * 19 9 7 21 21 C 1.52999 * 117.50031 * 243.74720 * 20 19 9 22 22 C 1.52999 * 117.49969 * 175.08555 * 20 19 9 23 23 C 1.35363 * 126.38534 * 180.23925 * 2 1 3 24 24 C 1.50698 * 127.24882 * 0.04335 * 23 2 1 25 25 H 1.08999 * 109.46923 * 90.01904 * 1 2 3 26 26 H 1.08997 * 109.46905 * 210.02529 * 1 2 3 27 27 H 1.09000 * 109.47215 * 330.02315 * 1 2 3 28 28 H 1.08996 * 109.46999 * 35.40959 * 10 9 7 29 29 H 1.09003 * 109.46652 * 155.41245 * 10 9 7 30 30 H 0.96997 * 119.99431 * 179.97438 * 14 13 11 31 31 H 1.09005 * 109.46942 * 145.02309 * 19 9 7 32 32 H 1.08999 * 109.46724 * 25.02269 * 19 9 7 33 33 H 1.09003 * 115.54728 * 29.41489 * 20 19 9 34 34 H 1.09004 * 117.49693 * 359.97438 * 21 20 19 35 35 H 1.08994 * 117.49842 * 145.02206 * 21 20 19 36 36 H 1.09004 * 117.49652 * 214.98148 * 22 20 19 37 37 H 1.09001 * 117.49747 * 359.97438 * 22 20 19 38 38 H 1.09002 * 109.46859 * 270.13750 * 24 23 2 39 39 H 1.08998 * 109.47061 * 30.13890 * 24 23 2 40 40 H 1.09000 * 109.46889 * 150.13809 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0872 0.0000 4 1 1.9966 2.0057 -0.0004 5 7 3.5420 0.7296 0.0005 6 6 3.6321 -0.5853 0.0004 7 6 4.8765 -1.3811 0.0003 8 8 4.8233 -2.5924 0.0882 9 7 6.0708 -0.7643 -0.0972 10 6 6.1431 0.6989 -0.0808 11 6 5.9082 1.2292 -1.4717 12 1 5.7239 0.5447 -2.2865 13 6 5.9295 2.5879 -1.7041 14 7 6.1555 3.4214 -0.7121 15 14 5.6390 3.2452 -3.4284 16 1 5.4106 2.1106 -4.3587 17 1 4.4468 4.1306 -3.4263 18 1 6.8280 4.0172 -3.8708 19 6 7.2968 -1.5569 -0.2198 20 6 7.9197 -1.7502 1.1642 21 6 9.2991 -1.1359 1.4102 22 6 9.1511 -2.6525 1.2650 23 6 2.3100 -1.0897 -0.0046 24 6 1.8854 -2.5356 -0.0115 25 1 -0.3633 -0.0003 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 5.3811 1.0927 0.5917 29 1 7.1289 1.0100 0.2650 30 1 6.1708 4.3773 -0.8758 31 1 8.0030 -1.0362 -0.8666 32 1 7.0589 -2.5297 -0.6502 33 1 7.2178 -1.7615 1.9982 34 1 9.7632 -0.5944 0.5857 35 1 9.5050 -0.7434 2.4060 36 1 9.2596 -3.2572 2.1654 37 1 9.5173 -3.1088 0.3453 38 1 1.7800 -2.8883 1.0145 39 1 0.9306 -2.6314 -0.5285 40 1 2.6384 -3.1330 -0.5255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265219069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:54 Heat of formation + Delta-G solvation = 64.357877 kcal Electronic energy + Delta-G solvation = -22162.801371 eV Core-core repulsion = 18980.266547 eV Total energy + Delta-G solvation = -3182.534824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03547 -38.78473 -36.81230 -34.61272 -32.94769 -32.29326 -31.84662 -28.37091 -27.51101 -26.14194 -25.55652 -23.27605 -22.25819 -21.99844 -20.27126 -19.38020 -18.12529 -17.01709 -16.46334 -15.75655 -15.63683 -15.24587 -14.51313 -14.36555 -14.19912 -13.52950 -13.26582 -12.84110 -12.65328 -12.50617 -12.40881 -12.20873 -12.00452 -11.93474 -11.74961 -11.26098 -11.21126 -11.13478 -10.84293 -10.73091 -10.21363 -10.05942 -9.62109 -9.53683 -9.38683 -9.06890 -8.62600 -8.35059 -8.10716 -7.56506 -5.99448 -4.00095 2.45174 2.60047 3.25467 3.34343 3.39809 3.47302 3.95960 4.22319 4.31422 4.46265 5.03576 5.14582 5.19224 5.24895 5.30810 5.35656 5.40478 5.58095 5.67353 5.78416 5.87568 5.90726 5.92982 6.14282 6.19318 6.22957 6.24662 6.29150 6.40661 6.43602 6.65518 6.68192 6.97438 7.04269 7.48167 7.61383 7.86458 7.93706 8.30361 8.43161 8.64848 9.02082 9.15761 9.61695 11.08422 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.008833 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.668132 B = 3169.075008 C = 5235.503061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.018 4.018 3 N -0.389 5.389 4 H 0.439 0.561 5 N -0.176 5.176 6 C -0.016 4.016 7 C 0.600 3.400 8 O -0.568 6.568 9 N -0.583 5.583 10 C 0.234 3.766 11 C -0.503 4.503 12 H 0.052 0.948 13 C 0.068 3.932 14 N -0.892 5.892 15 Si 0.884 3.116 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.285 1.285 19 C 0.151 3.849 20 C -0.155 4.155 21 C -0.178 4.178 22 C -0.181 4.181 23 C -0.154 4.154 24 C -0.069 4.069 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.258 0.742 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -6.209 3.276 9.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 N -0.103 5.103 4 H 0.283 0.717 5 N -0.010 5.010 6 C -0.176 4.176 7 C 0.387 3.613 8 O -0.447 6.447 9 N -0.312 5.312 10 C 0.114 3.886 11 C -0.543 4.543 12 H 0.070 0.930 13 C -0.133 4.133 14 N -0.532 5.532 15 Si 0.713 3.287 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.211 1.211 19 C 0.027 3.973 20 C -0.174 4.174 21 C -0.215 4.215 22 C -0.219 4.219 23 C -0.165 4.165 24 C -0.127 4.127 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.292 -5.697 3.352 8.468 hybrid contribution -0.722 0.655 -1.046 1.430 sum -6.014 -5.042 2.305 8.180 Atomic orbital electron populations 1.20220 0.87647 1.03080 1.02562 1.21074 0.94666 0.87599 1.10894 1.43627 1.03829 1.08989 1.53903 0.71737 1.74573 0.98530 1.14022 1.13879 1.21758 0.94179 0.90085 1.11614 1.16961 0.82159 0.85801 0.76369 1.90645 1.87118 1.13543 1.53444 1.48118 1.04109 1.10022 1.68939 1.19742 0.98684 0.71922 0.98266 1.21346 1.47531 0.91553 0.93831 0.92951 1.24764 0.95550 0.96727 0.96304 1.69948 1.50235 1.02476 1.30499 0.86665 0.77685 0.78873 0.85494 1.20021 1.21313 1.21099 1.20877 0.86419 0.96295 0.93706 1.22756 0.90692 1.03875 1.00123 1.23025 1.00556 0.95169 1.02770 1.22900 1.02981 0.93276 1.02721 1.19984 0.91157 0.95962 1.09376 1.20057 1.00567 0.90551 1.01537 0.91073 0.90237 0.91678 0.91784 0.95033 0.93196 0.90421 0.90399 0.88081 0.88607 0.89312 0.89313 0.88977 0.92188 0.92851 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.14 36.01 0.37 -0.44 16 2 C -0.02 -0.29 7.23 -82.21 -0.59 -0.88 16 3 N -0.39 -6.79 6.83 33.50 0.23 -6.56 16 4 H 0.44 6.28 8.96 -190.45 -1.71 4.57 16 5 N -0.18 -3.85 7.90 33.42 0.26 -3.59 16 6 C -0.02 -0.34 6.74 -82.77 -0.56 -0.90 16 7 C 0.60 13.82 7.62 -12.39 -0.09 13.72 16 8 O -0.57 -13.27 14.74 5.31 0.08 -13.19 16 9 N -0.58 -13.19 2.47 -176.22 -0.44 -13.62 16 10 C 0.23 5.86 4.78 -5.19 -0.02 5.84 16 11 C -0.50 -13.55 8.05 -34.44 -0.28 -13.83 16 12 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 15 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.15 2.93 5.68 -4.04 -0.02 2.91 16 20 C -0.16 -2.66 6.01 -90.62 -0.54 -3.20 16 21 C -0.18 -2.68 10.18 -26.69 -0.27 -2.95 16 22 C -0.18 -2.51 10.25 -26.69 -0.27 -2.79 16 23 C -0.15 -2.84 6.25 -104.40 -0.65 -3.49 16 24 C -0.07 -1.08 9.57 36.00 0.34 -0.74 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.73 7.98 -51.93 -0.41 0.32 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.70 5.65 -51.93 -0.29 1.41 16 29 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.08 1.49 7.84 -51.93 -0.41 1.08 16 32 H 0.08 1.50 7.36 -51.93 -0.38 1.12 16 33 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.10 1.44 8.03 -51.93 -0.42 1.03 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.67 8.00 -51.93 -0.42 0.26 16 40 H 0.08 1.37 6.83 -51.93 -0.35 1.02 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -31.48 335.84 -9.10 -40.58 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.31 Total: 4.30 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.70 Total: -5.00 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.79 Total: -47.95 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.48 -9.10 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265219069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.937 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds