Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35042 * 126.38496 * 2 1 4 4 H 0.96993 * 124.88430 * 359.97048 * 3 2 1 5 5 N 1.28467 * 110.22693 * 179.97438 * 3 2 1 6 6 C 1.31801 * 110.07953 * 0.02562 * 5 3 2 7 7 C 1.47708 * 126.52346 * 179.97438 * 6 5 3 8 8 O 1.21564 * 120.00316 * 175.20029 * 7 6 5 9 9 N 1.34777 * 119.99787 * 355.19988 * 7 6 5 10 10 C 1.46507 * 119.99875 * 5.54644 * 9 7 6 11 11 C 1.50700 * 109.47243 * 275.41115 * 10 9 7 12 12 H 1.08001 * 119.99709 * 359.97438 * 11 10 9 13 13 C 1.37868 * 120.00002 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00158 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47147 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47223 * 119.99987 * 15 13 11 18 18 H 1.48503 * 109.47476 * 239.99918 * 15 13 11 19 19 C 1.46501 * 120.00189 * 185.54876 * 9 7 6 20 20 C 1.52998 * 109.47097 * 265.02424 * 19 9 7 21 21 C 1.52999 * 117.50031 * 243.74720 * 20 19 9 22 22 C 1.52999 * 117.49969 * 175.08555 * 20 19 9 23 23 C 1.35363 * 126.38534 * 180.23925 * 2 1 3 24 24 C 1.50698 * 127.24882 * 0.04335 * 23 2 1 25 25 H 1.08999 * 109.46923 * 90.01904 * 1 2 3 26 26 H 1.08997 * 109.46905 * 210.02529 * 1 2 3 27 27 H 1.09000 * 109.47215 * 330.02315 * 1 2 3 28 28 H 1.08996 * 109.46999 * 35.40959 * 10 9 7 29 29 H 1.09003 * 109.46652 * 155.41245 * 10 9 7 30 30 H 0.96997 * 119.99431 * 179.97438 * 14 13 11 31 31 H 1.09005 * 109.46942 * 145.02309 * 19 9 7 32 32 H 1.08999 * 109.46724 * 25.02269 * 19 9 7 33 33 H 1.09003 * 115.54728 * 29.41489 * 20 19 9 34 34 H 1.09004 * 117.49693 * 359.97438 * 21 20 19 35 35 H 1.08994 * 117.49842 * 145.02206 * 21 20 19 36 36 H 1.09004 * 117.49652 * 214.98148 * 22 20 19 37 37 H 1.09001 * 117.49747 * 359.97438 * 22 20 19 38 38 H 1.09002 * 109.46859 * 270.13750 * 24 23 2 39 39 H 1.08998 * 109.47061 * 30.13890 * 24 23 2 40 40 H 1.09000 * 109.46889 * 150.13809 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0872 0.0000 4 1 1.9966 2.0057 -0.0004 5 7 3.5420 0.7296 0.0005 6 6 3.6321 -0.5853 0.0004 7 6 4.8765 -1.3811 0.0003 8 8 4.8233 -2.5924 0.0882 9 7 6.0708 -0.7643 -0.0972 10 6 6.1431 0.6989 -0.0808 11 6 5.9082 1.2292 -1.4717 12 1 5.7239 0.5447 -2.2865 13 6 5.9295 2.5879 -1.7041 14 7 6.1555 3.4214 -0.7121 15 14 5.6390 3.2452 -3.4284 16 1 5.4106 2.1106 -4.3587 17 1 4.4468 4.1306 -3.4263 18 1 6.8280 4.0172 -3.8708 19 6 7.2968 -1.5569 -0.2198 20 6 7.9197 -1.7502 1.1642 21 6 9.2991 -1.1359 1.4102 22 6 9.1511 -2.6525 1.2650 23 6 2.3100 -1.0897 -0.0046 24 6 1.8854 -2.5356 -0.0115 25 1 -0.3633 -0.0003 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 5.3811 1.0927 0.5917 29 1 7.1289 1.0100 0.2650 30 1 6.1708 4.3773 -0.8758 31 1 8.0030 -1.0362 -0.8666 32 1 7.0589 -2.5297 -0.6502 33 1 7.2178 -1.7615 1.9982 34 1 9.7632 -0.5944 0.5857 35 1 9.5050 -0.7434 2.4060 36 1 9.2596 -3.2572 2.1654 37 1 9.5173 -3.1088 0.3453 38 1 1.7800 -2.8883 1.0145 39 1 0.9306 -2.6314 -0.5285 40 1 2.6384 -3.1330 -0.5255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265219069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = 45.766457 kcal Electronic energy + Delta-G solvation = -22163.607555 eV Core-core repulsion = 18980.266547 eV Total energy + Delta-G solvation = -3183.341008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.47517 -40.48806 -38.21971 -36.39355 -34.39118 -34.17197 -33.21967 -29.81648 -29.16799 -27.80448 -26.79862 -25.14535 -23.95010 -23.19507 -21.67905 -20.75293 -19.79484 -18.54181 -18.41538 -17.45644 -17.16964 -16.74079 -16.27663 -16.00384 -15.70426 -14.78283 -14.62067 -14.40304 -14.17826 -13.86952 -13.73539 -13.59540 -13.53849 -13.37288 -12.94351 -12.89118 -12.81306 -12.60354 -12.48221 -12.33089 -12.16015 -11.66573 -11.35002 -11.14151 -10.85199 -10.74769 -10.42786 -10.10931 -9.49346 -9.34124 -8.08234 -6.15793 0.83409 1.27130 1.34375 1.38286 1.48191 2.09093 2.36358 2.51257 2.58925 2.97298 3.22847 3.64557 3.87080 3.91880 4.01228 4.12097 4.19917 4.35395 4.42562 4.49581 4.74304 4.77762 4.82631 4.83377 4.96239 4.99207 5.02529 5.06472 5.13863 5.15117 5.27101 5.28444 5.33815 5.42229 5.67098 5.83154 5.93285 6.21970 6.39220 6.58184 6.88112 7.15890 7.40328 7.50837 8.98903 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.008833 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.668132 B = 3169.075008 C = 5235.503061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.009 3.991 3 N -0.383 5.383 4 H 0.451 0.549 5 N -0.221 5.221 6 C -0.049 4.049 7 C 0.591 3.409 8 O -0.580 6.580 9 N -0.589 5.589 10 C 0.255 3.745 11 C -0.507 4.507 12 H 0.033 0.967 13 C 0.031 3.969 14 N -0.916 5.916 15 Si 0.942 3.058 16 H -0.281 1.281 17 H -0.277 1.277 18 H -0.279 1.279 19 C 0.150 3.850 20 C -0.182 4.182 21 C -0.175 4.175 22 C -0.152 4.152 23 C -0.180 4.180 24 C -0.062 4.062 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.012 0.988 30 H 0.262 0.738 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 -6.297 3.000 10.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 N -0.099 5.099 4 H 0.297 0.703 5 N -0.056 5.056 6 C -0.209 4.209 7 C 0.379 3.621 8 O -0.461 6.461 9 N -0.318 5.318 10 C 0.134 3.866 11 C -0.546 4.546 12 H 0.051 0.949 13 C -0.168 4.168 14 N -0.556 5.556 15 Si 0.769 3.231 16 H -0.207 1.207 17 H -0.203 1.203 18 H -0.204 1.204 19 C 0.027 3.973 20 C -0.202 4.202 21 C -0.212 4.212 22 C -0.189 4.189 23 C -0.191 4.191 24 C -0.120 4.120 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.718 -5.785 3.078 9.385 hybrid contribution -0.339 0.681 -0.938 1.208 sum -7.058 -5.104 2.140 8.969 Atomic orbital electron populations 1.20461 0.83231 1.05273 1.04338 1.21815 0.96874 0.85843 1.07086 1.43700 1.03101 1.10249 1.52841 0.70336 1.74426 1.00936 1.14353 1.15910 1.21890 0.95082 0.90591 1.13345 1.17301 0.82759 0.85993 0.76082 1.90606 1.87433 1.13890 1.54175 1.48136 1.05275 1.09307 1.69050 1.19302 0.96821 0.73337 0.97140 1.21320 1.47746 0.91614 0.93891 0.94864 1.25339 0.95215 0.96762 0.99468 1.70033 1.50695 1.02779 1.32086 0.85772 0.77966 0.78037 0.81360 1.20653 1.20305 1.20441 1.20972 0.85440 0.95513 0.95359 1.22552 0.91612 1.08019 0.97983 1.23085 0.98337 0.96482 1.03285 1.23026 0.98925 0.92674 1.04259 1.20423 0.90076 0.98042 1.10520 1.20043 1.01297 0.88479 1.02166 0.89282 0.88342 0.89243 0.93188 0.96976 0.92894 0.90718 0.90675 0.89844 0.88829 0.88242 0.87261 0.87574 0.91390 0.89377 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.14 71.24 0.72 -0.53 16 2 C 0.01 0.26 7.23 41.40 0.30 0.56 16 3 N -0.38 -13.10 6.83 -47.93 -0.33 -13.43 16 4 H 0.45 12.42 8.96 -220.00 -1.97 10.45 16 5 N -0.22 -9.89 7.90 -48.17 -0.38 -10.28 16 6 C -0.05 -2.22 6.74 42.46 0.29 -1.94 16 7 C 0.59 28.39 7.62 86.75 0.66 29.05 16 8 O -0.58 -28.16 14.74 -3.92 -0.06 -28.22 16 9 N -0.59 -27.94 2.47 -829.71 -2.05 -29.99 16 10 C 0.25 13.37 4.78 85.63 0.41 13.78 16 11 C -0.51 -28.06 8.05 25.60 0.21 -27.85 16 12 H 0.03 1.93 7.81 -2.91 -0.02 1.91 16 13 C 0.03 1.72 5.46 84.65 0.46 2.18 16 14 N -0.92 -51.65 13.29 21.44 0.28 -51.36 16 15 Si 0.94 43.64 29.54 68.60 2.03 45.67 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 C 0.15 6.06 5.68 86.38 0.49 6.55 16 20 C -0.18 -6.37 6.01 -10.79 -0.06 -6.43 16 21 C -0.17 -5.17 10.18 30.62 0.31 -4.86 16 22 C -0.15 -3.98 10.25 30.62 0.31 -3.66 16 23 C -0.18 -6.52 6.25 -19.72 -0.12 -6.64 16 24 C -0.06 -1.87 9.57 71.24 0.68 -1.18 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 1.35 7.98 -2.39 -0.02 1.33 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 2.80 5.65 -2.39 -0.01 2.78 16 29 H 0.01 0.67 8.03 -2.39 -0.02 0.66 16 30 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.07 2.98 7.84 -2.38 -0.02 2.97 16 32 H 0.07 3.01 7.36 -2.39 -0.02 3.00 16 33 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.09 2.80 8.03 -2.38 -0.02 2.78 16 35 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.09 1.97 8.00 -2.39 -0.02 1.95 16 40 H 0.05 1.83 6.83 -2.39 -0.02 1.82 16 Total: -1.00 -70.02 335.84 3.23 -66.79 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.92 Total: 21.80 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.66 Total: -0.98 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -2.47 Total: -105.06 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.06 Total: -28.22 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.02 3.23 -66.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265219069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.554 kcal (2) G-P(sol) polarization free energy of solvation -70.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds