Wall clock time and date at job start Mon Mar 30 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38281 * 126.31999 * 2 1 4 4 C 1.46960 * 126.44235 * 0.02562 * 3 2 1 5 5 C 1.35048 * 119.99937 * 180.02562 * 4 3 2 6 6 C 1.41836 * 119.99958 * 180.02562 * 5 4 3 7 7 O 1.21741 * 119.99785 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99885 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00143 * 359.97438 * 8 6 5 10 10 C 1.46501 * 119.99694 * 180.02562 * 8 6 5 11 11 H 1.08997 * 109.47435 * 359.97438 * 10 8 6 12 12 C 1.53004 * 109.46896 * 239.99662 * 10 8 6 13 13 C 1.50696 * 109.47087 * 119.99893 * 10 8 6 14 14 H 1.08000 * 120.00234 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99842 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99995 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99853 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47193 * 60.00354 * 17 15 13 19 19 H 1.48500 * 109.46896 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47175 * 299.99763 * 17 15 13 21 21 C 1.41440 * 107.11505 * 180.02562 * 3 2 1 22 22 N 1.30437 * 108.04085 * 359.97438 * 21 3 2 23 23 N 1.34404 * 126.31188 * 180.02562 * 2 1 3 24 24 C 1.46495 * 125.74604 * 359.71208 * 23 2 1 25 25 H 1.08999 * 109.46868 * 270.00143 * 1 2 3 26 26 H 1.08999 * 109.47190 * 29.99580 * 1 2 3 27 27 H 1.08998 * 109.47602 * 150.00173 * 1 2 3 28 28 H 1.07996 * 120.00372 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.00438 * 0.02562 * 5 4 3 30 30 H 1.08993 * 109.46971 * 90.00052 * 9 8 6 31 31 H 1.08999 * 109.46892 * 210.00041 * 9 8 6 32 32 H 1.08999 * 109.46663 * 330.00052 * 9 8 6 33 33 H 1.08997 * 109.47222 * 300.00313 * 12 10 8 34 34 H 1.09000 * 109.46905 * 60.00160 * 12 10 8 35 35 H 1.09003 * 109.47358 * 179.97438 * 12 10 8 36 36 H 0.97008 * 120.00213 * 179.97438 * 16 15 13 37 37 H 1.08001 * 125.98181 * 180.02562 * 21 3 2 38 38 H 1.08997 * 109.47263 * 89.99792 * 24 23 2 39 39 H 1.08997 * 109.47254 * 210.00331 * 24 23 2 40 40 H 1.09004 * 109.46747 * 329.99933 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1142 0.0000 4 6 1.8905 2.5178 0.0005 5 6 2.8074 3.5092 -0.0001 6 6 2.3871 4.8639 0.0010 7 8 1.1998 5.1328 0.0020 8 7 3.3022 5.8533 -0.0001 9 6 4.7310 5.5297 -0.0018 10 6 2.8680 7.2525 0.0015 11 1 1.7789 7.2950 0.0032 12 6 3.4035 7.9541 -1.2483 13 6 3.3999 7.9420 1.2314 14 1 4.0009 7.3929 1.9411 15 6 3.1193 9.2741 1.4507 16 7 2.3871 9.9427 0.5867 17 14 3.7780 10.1286 2.9755 18 1 5.2619 10.0702 2.9737 19 1 3.3380 11.5469 2.9771 20 1 3.2573 9.4480 4.1883 21 6 3.6617 0.6489 -0.0006 22 7 3.6352 -0.6552 -0.0004 23 7 2.3029 -1.0830 -0.0005 24 6 1.8516 -2.4767 0.0049 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 0.8372 2.7564 0.0014 29 1 3.8607 3.2707 -0.0013 30 1 5.0841 5.4495 -1.0299 31 1 5.2826 6.3174 0.5113 32 1 4.8893 4.5814 0.5118 33 1 4.4926 7.9116 -1.2503 34 1 3.0188 7.4553 -2.1378 35 1 3.0801 8.9951 -1.2473 36 1 2.1893 10.8797 0.7411 37 1 4.5484 1.2655 -0.0004 38 1 1.7355 -2.8250 -1.0214 39 1 2.5884 -3.0953 0.5173 40 1 0.8950 -2.5469 0.5228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270161224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:20 Heat of formation + Delta-G solvation = 59.694648 kcal Electronic energy + Delta-G solvation = -20932.894370 eV Core-core repulsion = 17750.157333 eV Total energy + Delta-G solvation = -3182.737036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38431 -39.05176 -35.35465 -34.30858 -33.28190 -32.75274 -31.25231 -29.33012 -27.11992 -26.83972 -25.93516 -25.14306 -23.48896 -21.37624 -20.10733 -19.27352 -17.79935 -16.84328 -16.50060 -16.02748 -15.92700 -15.22450 -14.54995 -14.35868 -14.24758 -13.85331 -13.55556 -13.36122 -12.92343 -12.81197 -12.74426 -12.41154 -12.29069 -12.17006 -11.90265 -11.47215 -11.19723 -10.98679 -10.79410 -10.64860 -10.59059 -10.22514 -10.11663 -10.08414 -9.51624 -9.10437 -8.85800 -8.35065 -7.86150 -7.38139 -6.00163 -4.07822 1.12373 1.89303 2.23017 3.03028 3.32539 3.37244 3.39523 4.12633 4.25035 4.30985 4.36728 4.48579 4.70289 4.77096 4.93304 5.03425 5.17509 5.20699 5.30391 5.35088 5.51094 5.57586 5.67592 5.85893 6.00283 6.16160 6.43363 6.46908 6.62365 6.65720 6.82213 6.86028 6.95778 7.17353 7.50348 7.57277 7.65749 7.80902 8.11817 8.29486 8.68044 8.92120 9.22355 9.58578 11.05033 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033347 B = 0.003313 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.443715 B = 8450.561535 C = 8565.597955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.106 3.894 3 C -0.222 4.222 4 C 0.011 3.989 5 C -0.219 4.219 6 C 0.537 3.463 7 O -0.566 6.566 8 N -0.590 5.590 9 C 0.084 3.916 10 C 0.257 3.743 11 H 0.063 0.937 12 C -0.146 4.146 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.075 3.925 22 N -0.304 5.304 23 N -0.369 5.369 24 C 0.099 3.901 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.010 0.990 35 H 0.092 0.908 36 H 0.263 0.737 37 H 0.189 0.811 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 -21.938 -2.187 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.024 4.024 3 C -0.233 4.233 4 C -0.010 4.010 5 C -0.240 4.240 6 C 0.328 3.672 7 O -0.449 6.449 8 N -0.320 5.320 9 C -0.060 4.060 10 C 0.157 3.843 11 H 0.081 0.919 12 C -0.204 4.204 13 C -0.563 4.563 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.111 4.111 22 N -0.124 5.124 23 N -0.149 5.149 24 C -0.043 4.043 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.030 0.970 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.205 0.795 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.067 -22.812 -2.225 22.921 hybrid contribution 0.199 1.193 0.828 1.466 sum 0.132 -21.619 -1.396 21.665 Atomic orbital electron populations 1.20546 0.86676 1.04383 1.03867 1.21651 0.94579 0.86949 0.99217 1.19259 0.92043 0.93081 1.18934 1.21515 0.99771 0.88323 0.91411 1.22039 1.00105 0.93467 1.08422 1.17046 0.86198 0.85904 0.78055 1.90742 1.16729 1.85050 1.52334 1.48143 1.05316 1.08547 1.70040 1.21613 0.83155 1.00927 1.00296 1.18895 0.97482 0.74090 0.93863 0.91894 1.22076 0.98617 1.03832 0.95884 1.21316 1.33327 0.95192 1.06491 0.92312 1.24893 0.95022 0.97223 0.96670 1.69877 1.37719 1.09708 1.35397 0.86565 0.79143 0.78420 0.83298 1.20265 1.21223 1.20265 1.24115 0.97832 0.91556 0.97645 1.77122 0.96018 1.13609 1.25605 1.48240 1.04109 1.06089 1.56492 1.21877 1.01107 0.77799 1.03488 0.89600 0.88788 0.90925 0.85103 0.86145 0.94009 0.90300 0.92632 0.95238 0.97049 0.88945 0.92708 0.79465 0.90595 0.89092 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.69 36.00 0.35 -0.35 16 2 C 0.11 1.15 7.02 -81.45 -0.57 0.58 16 3 C -0.22 -2.89 6.08 -105.13 -0.64 -3.53 16 4 C 0.01 0.17 9.33 -37.18 -0.35 -0.18 16 5 C -0.22 -3.66 8.60 -39.34 -0.34 -3.99 16 6 C 0.54 11.80 7.45 -14.89 -0.11 11.69 16 7 O -0.57 -14.52 15.43 5.15 0.08 -14.44 16 8 N -0.59 -13.26 2.75 -178.61 -0.49 -13.75 16 9 C 0.08 1.48 9.12 59.85 0.55 2.03 16 10 C 0.26 6.81 2.64 -69.08 -0.18 6.63 16 11 H 0.06 1.93 6.90 -51.93 -0.36 1.57 16 12 C -0.15 -3.61 8.97 37.16 0.33 -3.28 16 13 C -0.52 -14.56 7.99 -34.44 -0.28 -14.83 16 14 H 0.06 1.60 7.33 -52.49 -0.38 1.21 16 15 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -25.65 11.32 55.43 0.63 -25.02 16 17 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.08 0.94 11.39 -16.93 -0.19 0.74 16 22 N -0.30 -3.90 12.49 30.89 0.39 -3.52 16 23 N -0.37 -3.89 3.98 -63.25 -0.25 -4.15 16 24 C 0.10 0.56 11.06 59.84 0.66 1.23 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.72 7.61 -51.93 -0.40 0.32 16 27 H 0.07 0.36 7.71 -51.93 -0.40 -0.04 16 28 H 0.13 2.01 7.02 -52.49 -0.37 1.65 16 29 H 0.12 1.67 4.96 -52.49 -0.26 1.41 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 32 H 0.06 0.80 6.08 -51.93 -0.32 0.49 16 33 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.19 1.89 7.31 -52.49 -0.38 1.51 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.30 7.64 -51.93 -0.40 -0.10 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -34.98 333.83 -6.09 -41.07 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.59 Total: -0.03 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.86 Total: -1.59 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.27 Total: -46.43 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.08 Total: -14.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.98 -6.09 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270161224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.769 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds