Wall clock time and date at job start Mon Mar 30 2020 02:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38281 * 126.31999 * 2 1 4 4 C 1.46960 * 126.44235 * 0.02562 * 3 2 1 5 5 C 1.35048 * 119.99937 * 180.02562 * 4 3 2 6 6 C 1.41836 * 119.99958 * 180.02562 * 5 4 3 7 7 O 1.21741 * 119.99785 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99885 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00143 * 359.97438 * 8 6 5 10 10 C 1.46501 * 119.99694 * 180.02562 * 8 6 5 11 11 H 1.08997 * 109.47435 * 359.97438 * 10 8 6 12 12 C 1.53004 * 109.46896 * 239.99662 * 10 8 6 13 13 C 1.50696 * 109.47087 * 119.99893 * 10 8 6 14 14 H 1.08000 * 120.00234 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99842 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99995 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99853 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47193 * 60.00354 * 17 15 13 19 19 H 1.48500 * 109.46896 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47175 * 299.99763 * 17 15 13 21 21 C 1.41440 * 107.11505 * 180.02562 * 3 2 1 22 22 N 1.30437 * 108.04085 * 359.97438 * 21 3 2 23 23 N 1.34404 * 126.31188 * 180.02562 * 2 1 3 24 24 C 1.46495 * 125.74604 * 359.71208 * 23 2 1 25 25 H 1.08999 * 109.46868 * 270.00143 * 1 2 3 26 26 H 1.08999 * 109.47190 * 29.99580 * 1 2 3 27 27 H 1.08998 * 109.47602 * 150.00173 * 1 2 3 28 28 H 1.07996 * 120.00372 * 0.02562 * 4 3 2 29 29 H 1.07995 * 120.00438 * 0.02562 * 5 4 3 30 30 H 1.08993 * 109.46971 * 90.00052 * 9 8 6 31 31 H 1.08999 * 109.46892 * 210.00041 * 9 8 6 32 32 H 1.08999 * 109.46663 * 330.00052 * 9 8 6 33 33 H 1.08997 * 109.47222 * 300.00313 * 12 10 8 34 34 H 1.09000 * 109.46905 * 60.00160 * 12 10 8 35 35 H 1.09003 * 109.47358 * 179.97438 * 12 10 8 36 36 H 0.97008 * 120.00213 * 179.97438 * 16 15 13 37 37 H 1.08001 * 125.98181 * 180.02562 * 21 3 2 38 38 H 1.08997 * 109.47263 * 89.99792 * 24 23 2 39 39 H 1.08997 * 109.47254 * 210.00331 * 24 23 2 40 40 H 1.09004 * 109.46747 * 329.99933 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1142 0.0000 4 6 1.8905 2.5178 0.0005 5 6 2.8074 3.5092 -0.0001 6 6 2.3871 4.8639 0.0010 7 8 1.1998 5.1328 0.0020 8 7 3.3022 5.8533 -0.0001 9 6 4.7310 5.5297 -0.0018 10 6 2.8680 7.2525 0.0015 11 1 1.7789 7.2950 0.0032 12 6 3.4035 7.9541 -1.2483 13 6 3.3999 7.9420 1.2314 14 1 4.0009 7.3929 1.9411 15 6 3.1193 9.2741 1.4507 16 7 2.3871 9.9427 0.5867 17 14 3.7780 10.1286 2.9755 18 1 5.2619 10.0702 2.9737 19 1 3.3380 11.5469 2.9771 20 1 3.2573 9.4480 4.1883 21 6 3.6617 0.6489 -0.0006 22 7 3.6352 -0.6552 -0.0004 23 7 2.3029 -1.0830 -0.0005 24 6 1.8516 -2.4767 0.0049 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 0.8372 2.7564 0.0014 29 1 3.8607 3.2707 -0.0013 30 1 5.0841 5.4495 -1.0299 31 1 5.2826 6.3174 0.5113 32 1 4.8893 4.5814 0.5118 33 1 4.4926 7.9116 -1.2503 34 1 3.0188 7.4553 -2.1378 35 1 3.0801 8.9951 -1.2473 36 1 2.1893 10.8797 0.7411 37 1 4.5484 1.2655 -0.0004 38 1 1.7355 -2.8250 -1.0214 39 1 2.5884 -3.0953 0.5173 40 1 0.8950 -2.5469 0.5228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270161224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:19 Heat of formation + Delta-G solvation = 36.677709 kcal Electronic energy + Delta-G solvation = -20933.892459 eV Core-core repulsion = 17750.157333 eV Total energy + Delta-G solvation = -3183.735126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25235 -40.73735 -37.16825 -35.38204 -34.73097 -34.13828 -32.32796 -31.09687 -28.02722 -27.64171 -27.40319 -27.25564 -24.80459 -22.72756 -21.33342 -20.39101 -19.27420 -18.50667 -18.08827 -17.26163 -17.00590 -16.65513 -16.12767 -15.95956 -15.34347 -15.02357 -14.55424 -14.43325 -14.06596 -14.04620 -13.86444 -13.50590 -13.43463 -13.29941 -13.16487 -12.94897 -12.89141 -12.72003 -12.59723 -12.47593 -12.16146 -12.09594 -11.60398 -11.28725 -11.16110 -10.66031 -10.44759 -10.32072 -9.31179 -8.78507 -8.11385 -6.28435 0.00427 0.95035 1.42652 1.45587 1.52926 1.53653 1.92254 2.38463 2.64994 2.76604 3.15668 3.50862 3.65400 4.01226 4.05230 4.20570 4.29921 4.40791 4.48093 4.60632 4.66336 4.70175 4.70360 4.79867 4.82872 4.93445 4.95630 5.03936 5.08055 5.11050 5.38519 5.50428 5.53731 5.56253 5.72021 5.74468 6.00149 6.11403 6.20371 6.62542 6.79784 6.94680 7.36671 7.58075 8.92648 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033347 B = 0.003313 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.443715 B = 8450.561535 C = 8565.597955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.123 3.877 3 C -0.261 4.261 4 C 0.049 3.951 5 C -0.248 4.248 6 C 0.530 3.470 7 O -0.621 6.621 8 N -0.601 5.601 9 C 0.081 3.919 10 C 0.261 3.739 11 H 0.007 0.993 12 C -0.131 4.131 13 C -0.540 4.540 14 H 0.061 0.939 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.283 1.283 20 H -0.277 1.277 21 C 0.074 3.926 22 N -0.331 5.331 23 N -0.366 5.366 24 C 0.085 3.915 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.067 0.933 36 H 0.264 0.736 37 H 0.205 0.795 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -24.514 -1.596 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.009 4.009 3 C -0.272 4.272 4 C 0.027 3.973 5 C -0.269 4.269 6 C 0.324 3.676 7 O -0.508 6.508 8 N -0.330 5.330 9 C -0.061 4.061 10 C 0.158 3.842 11 H 0.025 0.975 12 C -0.189 4.189 13 C -0.578 4.578 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.558 5.558 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.203 1.203 21 C -0.112 4.112 22 N -0.150 5.150 23 N -0.146 5.146 24 C -0.054 4.054 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.138 0.862 29 H 0.168 0.832 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.222 0.778 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.947 -25.443 -1.641 25.513 hybrid contribution -0.227 1.751 0.614 1.869 sum 0.720 -23.692 -1.028 23.725 Atomic orbital electron populations 1.20731 0.84164 1.05672 1.05147 1.22171 0.96053 0.86518 0.96134 1.19227 0.93101 0.92436 1.22435 1.21554 0.99001 0.89359 0.87404 1.21769 1.01880 0.90495 1.12779 1.17828 0.85375 0.87690 0.76737 1.90699 1.18948 1.86025 1.55106 1.48144 1.07561 1.07026 1.70291 1.21850 0.79985 1.02198 1.02090 1.18497 0.94354 0.76874 0.94428 0.97461 1.21862 0.99454 1.02120 0.95502 1.21580 1.33471 0.95696 1.07073 0.92128 1.25765 0.95152 0.97936 0.99714 1.70027 1.38632 1.09957 1.37151 0.85491 0.79186 0.77111 0.79109 1.18643 1.20814 1.20259 1.24435 0.98260 0.91729 0.96737 1.77090 0.97602 1.13747 1.26599 1.48672 1.03392 1.07652 1.54857 1.22324 1.02567 0.75350 1.05142 0.88144 0.89353 0.87852 0.86183 0.83163 0.91835 0.91418 0.89113 0.93525 0.96326 0.91379 0.92638 0.77835 0.88957 0.88543 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 9.69 71.23 0.69 -0.45 16 2 C 0.12 2.36 7.02 42.17 0.30 2.66 16 3 C -0.26 -6.36 6.08 -20.19 -0.12 -6.48 16 4 C 0.05 1.43 9.33 23.82 0.22 1.66 16 5 C -0.25 -8.19 8.60 22.43 0.19 -8.00 16 6 C 0.53 23.95 7.45 85.13 0.63 24.58 16 7 O -0.62 -33.71 15.43 -4.48 -0.07 -33.77 16 8 N -0.60 -27.48 2.75 -837.20 -2.30 -29.78 16 9 C 0.08 2.75 9.12 127.77 1.17 3.92 16 10 C 0.26 14.37 2.64 44.25 0.12 14.49 16 11 H 0.01 0.49 6.90 -2.39 -0.02 0.47 16 12 C -0.13 -6.66 8.97 71.98 0.65 -6.01 16 13 C -0.54 -30.59 7.99 25.60 0.20 -30.38 16 14 H 0.06 3.32 7.33 -2.91 -0.02 3.30 16 15 C 0.01 0.77 5.30 84.66 0.45 1.22 16 16 N -0.92 -54.54 11.32 21.45 0.24 -54.30 16 17 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C 0.07 1.72 11.39 85.69 0.98 2.69 16 22 N -0.33 -7.78 12.49 -56.18 -0.70 -8.48 16 23 N -0.37 -6.68 3.98 -354.02 -1.41 -8.09 16 24 C 0.09 0.67 11.06 127.77 1.41 2.08 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 1.18 7.61 -2.39 -0.02 1.17 16 27 H 0.10 0.58 7.71 -2.39 -0.02 0.56 16 28 H 0.12 3.76 7.02 -2.91 -0.02 3.74 16 29 H 0.15 3.89 4.96 -2.91 -0.01 3.88 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.45 7.02 -2.39 -0.02 2.43 16 32 H 0.09 2.41 6.08 -2.39 -0.01 2.40 16 33 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 36 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 37 H 0.21 3.67 7.31 -2.91 -0.02 3.65 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.12 0.26 7.64 -2.38 -0.02 0.24 16 Total: -1.00 -79.78 333.83 5.71 -74.07 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.04 Total: 12.22 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.88 Total: 1.96 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.17 Total: -100.64 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.07 Total: -33.77 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -79.78 5.71 -74.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270161224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.751 kcal (2) G-P(sol) polarization free energy of solvation -79.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds