Wall clock time and date at job start Mon Mar 30 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38293 * 126.31462 * 2 1 4 4 C 1.46958 * 126.44212 * 0.02562 * 3 2 1 5 5 C 1.35045 * 120.00330 * 179.70582 * 4 3 2 6 6 C 1.41823 * 120.00451 * 179.97438 * 5 4 3 7 7 O 1.21743 * 119.99910 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00294 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99969 * 0.02562 * 8 6 5 10 10 C 1.46499 * 120.00036 * 179.72732 * 8 6 5 11 11 H 1.08998 * 109.47061 * 0.27944 * 10 8 6 12 12 C 1.53002 * 109.47216 * 120.28122 * 10 8 6 13 13 C 1.50702 * 109.46950 * 240.27755 * 10 8 6 14 14 H 1.07994 * 120.00187 * 0.02562 * 13 10 8 15 15 C 1.37879 * 120.00033 * 180.02562 * 13 10 8 16 16 N 1.31522 * 119.99787 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 120.00370 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47212 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46951 * 119.99547 * 17 15 13 20 20 H 1.48494 * 109.47536 * 239.99850 * 17 15 13 21 21 C 1.41442 * 107.11608 * 179.75993 * 3 2 1 22 22 N 1.30441 * 108.03588 * 0.23976 * 21 3 2 23 23 N 1.34403 * 126.32411 * 180.18318 * 2 1 3 24 24 C 1.46495 * 125.73665 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47285 * 89.99793 * 1 2 3 26 26 H 1.09004 * 109.47165 * 209.99310 * 1 2 3 27 27 H 1.08998 * 109.47804 * 329.99850 * 1 2 3 28 28 H 1.08001 * 120.00228 * 359.71309 * 4 3 2 29 29 H 1.08001 * 119.99441 * 0.02562 * 5 4 3 30 30 H 1.08999 * 109.46892 * 269.72362 * 9 8 6 31 31 H 1.09000 * 109.46803 * 29.71536 * 9 8 6 32 32 H 1.09000 * 109.47214 * 149.72329 * 9 8 6 33 33 H 1.08996 * 109.46989 * 59.99467 * 12 10 8 34 34 H 1.08996 * 109.47401 * 180.02562 * 12 10 8 35 35 H 1.09002 * 109.46768 * 300.00122 * 12 10 8 36 36 H 0.97000 * 119.99632 * 180.02562 * 16 15 13 37 37 H 1.07993 * 125.98068 * 180.26440 * 21 3 2 38 38 H 1.08995 * 109.47519 * 270.31528 * 24 23 2 39 39 H 1.08998 * 109.47419 * 30.32357 * 24 23 2 40 40 H 1.09006 * 109.47094 * 150.32237 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3259 1.1143 0.0000 4 6 1.8903 2.5179 0.0005 5 6 2.8070 3.5095 0.0065 6 6 2.3867 4.8640 0.0064 7 8 1.1993 5.1328 0.0015 8 7 3.3016 5.8535 0.0118 9 6 4.7305 5.5301 0.0172 10 6 2.8673 7.2527 0.0058 11 1 1.7782 7.2950 0.0020 12 6 3.4009 7.9578 1.2544 13 6 3.4010 7.9389 -1.2253 14 1 4.0030 7.3879 -1.9325 15 6 3.1207 9.2703 -1.4486 16 7 2.3879 9.9415 -0.5870 17 14 3.7827 10.1212 -2.9740 18 1 4.5728 9.1536 -3.7769 19 1 2.6496 10.6302 -3.7880 20 1 4.6513 11.2559 -2.5703 21 6 3.6617 0.6492 0.0057 22 7 3.6352 -0.6549 0.0036 23 7 2.3031 -1.0829 -0.0035 24 6 1.8518 -2.4766 -0.0074 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8901 0.5137 27 1 -0.3634 0.8899 0.5138 28 1 0.8370 2.7564 -0.0037 29 1 3.8604 3.2709 0.0104 30 1 5.0816 5.4530 1.0462 31 1 4.8898 4.5802 -0.4932 32 1 5.2829 6.3163 -0.4974 33 1 4.4900 7.9153 1.2581 34 1 3.0774 8.9986 1.2501 35 1 3.0149 7.4614 2.1448 36 1 2.1904 10.8781 -0.7443 37 1 4.5482 1.2659 0.0112 38 1 1.7349 -2.8236 1.0192 39 1 0.8958 -2.5476 -0.5261 40 1 2.5892 -3.0958 -0.5183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270161226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:22 Heat of formation + Delta-G solvation = 59.658450 kcal Electronic energy + Delta-G solvation = -20933.645741 eV Core-core repulsion = 17750.907135 eV Total energy + Delta-G solvation = -3182.738606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38441 -39.05243 -35.35534 -34.30876 -33.28190 -32.75336 -31.25281 -29.33090 -27.11959 -26.84011 -25.93577 -25.14679 -23.49022 -21.37669 -20.10813 -19.27464 -17.79972 -16.84431 -16.50219 -16.03135 -15.92744 -15.22809 -14.55010 -14.35327 -14.24987 -13.85063 -13.55592 -13.36031 -12.92318 -12.81274 -12.74404 -12.42178 -12.28907 -12.16962 -11.90383 -11.48108 -11.19537 -10.99932 -10.78200 -10.64866 -10.58830 -10.20889 -10.11576 -10.09270 -9.51599 -9.09045 -8.85949 -8.35755 -7.86138 -7.38050 -6.00628 -4.08072 1.12335 1.89302 2.22999 3.03003 3.30134 3.37916 3.41444 4.12599 4.24976 4.31178 4.36752 4.48346 4.70267 4.77034 4.93325 5.03405 5.17459 5.20707 5.30144 5.35100 5.51004 5.57516 5.67573 5.85912 6.00310 6.16167 6.43368 6.46896 6.62336 6.65698 6.82210 6.85903 6.95692 7.17278 7.50372 7.57206 7.65912 7.80911 8.11812 8.29318 8.67872 8.92404 9.22360 9.58465 11.04631 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.003314 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.477024 B = 8446.322352 C = 8559.463072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.106 3.894 3 C -0.222 4.222 4 C 0.011 3.989 5 C -0.219 4.219 6 C 0.537 3.463 7 O -0.566 6.566 8 N -0.590 5.590 9 C 0.084 3.916 10 C 0.256 3.744 11 H 0.063 0.937 12 C -0.145 4.145 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.898 3.102 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.075 3.925 22 N -0.304 5.304 23 N -0.369 5.369 24 C 0.099 3.901 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.092 0.908 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.189 0.811 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -21.966 2.200 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.024 4.024 3 C -0.233 4.233 4 C -0.010 4.010 5 C -0.240 4.240 6 C 0.328 3.672 7 O -0.449 6.449 8 N -0.320 5.320 9 C -0.060 4.060 10 C 0.156 3.844 11 H 0.081 0.919 12 C -0.204 4.204 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.111 4.111 22 N -0.124 5.124 23 N -0.149 5.149 24 C -0.043 4.043 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.205 0.795 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.054 -22.848 2.230 22.957 hybrid contribution 0.186 1.210 -0.817 1.472 sum 0.132 -21.638 1.412 21.685 Atomic orbital electron populations 1.20545 0.86675 1.04383 1.03866 1.21654 0.94578 0.86952 0.99221 1.19262 0.92043 0.93080 1.18933 1.21515 0.99771 0.88324 0.91408 1.22036 1.00108 0.93467 1.08424 1.17042 0.86199 0.85903 0.78054 1.90743 1.16729 1.85053 1.52336 1.48143 1.05318 1.08544 1.70035 1.21616 0.83157 1.00923 1.00300 1.18908 0.97502 0.74106 0.93898 0.91884 1.22072 0.98615 1.03838 0.95871 1.21393 1.33073 0.95227 1.06462 0.92206 1.24901 0.95045 0.97236 0.96696 1.69902 1.37860 1.09546 1.35383 0.86453 0.78687 0.79389 0.82930 1.19815 1.20960 1.20997 1.24115 0.97830 0.91555 0.97646 1.77121 0.96023 1.13608 1.25607 1.48237 1.04108 1.06091 1.56482 1.21877 1.01117 0.77798 1.03481 0.89605 0.90925 0.88785 0.85104 0.86144 0.94002 0.92628 0.90307 0.95236 0.88939 0.97045 0.92831 0.79466 0.90612 0.89397 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.70 36.00 0.35 -0.35 16 2 C 0.11 1.15 7.02 -81.45 -0.57 0.57 16 3 C -0.22 -2.89 6.08 -105.13 -0.64 -3.53 16 4 C 0.01 0.17 9.33 -37.19 -0.35 -0.18 16 5 C -0.22 -3.66 8.60 -39.35 -0.34 -3.99 16 6 C 0.54 11.79 7.45 -14.89 -0.11 11.68 16 7 O -0.57 -14.51 15.43 5.15 0.08 -14.44 16 8 N -0.59 -13.25 2.75 -178.61 -0.49 -13.74 16 9 C 0.08 1.48 9.13 59.85 0.55 2.03 16 10 C 0.26 6.79 2.64 -69.08 -0.18 6.61 16 11 H 0.06 1.93 6.90 -51.93 -0.36 1.57 16 12 C -0.15 -3.60 8.97 37.16 0.33 -3.27 16 13 C -0.52 -14.50 7.99 -34.44 -0.28 -14.77 16 14 H 0.06 1.64 7.33 -52.49 -0.38 1.25 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 17 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.08 0.94 11.39 -16.92 -0.19 0.74 16 22 N -0.30 -3.90 12.49 30.89 0.39 -3.52 16 23 N -0.37 -3.89 3.98 -63.25 -0.25 -4.14 16 24 C 0.10 0.56 11.06 59.84 0.66 1.23 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.36 7.72 -51.93 -0.40 -0.04 16 27 H 0.09 0.72 7.61 -51.93 -0.40 0.32 16 28 H 0.13 2.01 7.02 -52.49 -0.37 1.65 16 29 H 0.12 1.67 4.96 -52.49 -0.26 1.41 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.80 6.07 -51.93 -0.32 0.49 16 32 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 33 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 34 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.19 1.89 7.31 -52.49 -0.38 1.51 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.30 7.64 -51.93 -0.40 -0.10 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -35.01 333.82 -6.09 -41.11 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.59 Total: -0.10 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.86 Total: -1.58 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.27 Total: -46.40 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.08 Total: -14.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.01 -6.09 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270161226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.764 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds