Wall clock time and date at job start Mon Mar 30 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38293 * 126.31462 * 2 1 4 4 C 1.46958 * 126.44212 * 0.02562 * 3 2 1 5 5 C 1.35045 * 120.00330 * 179.70582 * 4 3 2 6 6 C 1.41823 * 120.00451 * 179.97438 * 5 4 3 7 7 O 1.21743 * 119.99910 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00294 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99969 * 0.02562 * 8 6 5 10 10 C 1.46499 * 120.00036 * 179.72732 * 8 6 5 11 11 H 1.08998 * 109.47061 * 0.27944 * 10 8 6 12 12 C 1.53002 * 109.47216 * 120.28122 * 10 8 6 13 13 C 1.50702 * 109.46950 * 240.27755 * 10 8 6 14 14 H 1.07994 * 120.00187 * 0.02562 * 13 10 8 15 15 C 1.37879 * 120.00033 * 180.02562 * 13 10 8 16 16 N 1.31522 * 119.99787 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 120.00370 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47212 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46951 * 119.99547 * 17 15 13 20 20 H 1.48494 * 109.47536 * 239.99850 * 17 15 13 21 21 C 1.41442 * 107.11608 * 179.75993 * 3 2 1 22 22 N 1.30441 * 108.03588 * 0.23976 * 21 3 2 23 23 N 1.34403 * 126.32411 * 180.18318 * 2 1 3 24 24 C 1.46495 * 125.73665 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47285 * 89.99793 * 1 2 3 26 26 H 1.09004 * 109.47165 * 209.99310 * 1 2 3 27 27 H 1.08998 * 109.47804 * 329.99850 * 1 2 3 28 28 H 1.08001 * 120.00228 * 359.71309 * 4 3 2 29 29 H 1.08001 * 119.99441 * 0.02562 * 5 4 3 30 30 H 1.08999 * 109.46892 * 269.72362 * 9 8 6 31 31 H 1.09000 * 109.46803 * 29.71536 * 9 8 6 32 32 H 1.09000 * 109.47214 * 149.72329 * 9 8 6 33 33 H 1.08996 * 109.46989 * 59.99467 * 12 10 8 34 34 H 1.08996 * 109.47401 * 180.02562 * 12 10 8 35 35 H 1.09002 * 109.46768 * 300.00122 * 12 10 8 36 36 H 0.97000 * 119.99632 * 180.02562 * 16 15 13 37 37 H 1.07993 * 125.98068 * 180.26440 * 21 3 2 38 38 H 1.08995 * 109.47519 * 270.31528 * 24 23 2 39 39 H 1.08998 * 109.47419 * 30.32357 * 24 23 2 40 40 H 1.09006 * 109.47094 * 150.32237 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3259 1.1143 0.0000 4 6 1.8903 2.5179 0.0005 5 6 2.8070 3.5095 0.0065 6 6 2.3867 4.8640 0.0064 7 8 1.1993 5.1328 0.0015 8 7 3.3016 5.8535 0.0118 9 6 4.7305 5.5301 0.0172 10 6 2.8673 7.2527 0.0058 11 1 1.7782 7.2950 0.0020 12 6 3.4009 7.9578 1.2544 13 6 3.4010 7.9389 -1.2253 14 1 4.0030 7.3879 -1.9325 15 6 3.1207 9.2703 -1.4486 16 7 2.3879 9.9415 -0.5870 17 14 3.7827 10.1212 -2.9740 18 1 4.5728 9.1536 -3.7769 19 1 2.6496 10.6302 -3.7880 20 1 4.6513 11.2559 -2.5703 21 6 3.6617 0.6492 0.0057 22 7 3.6352 -0.6549 0.0036 23 7 2.3031 -1.0829 -0.0035 24 6 1.8518 -2.4766 -0.0074 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8901 0.5137 27 1 -0.3634 0.8899 0.5138 28 1 0.8370 2.7564 -0.0037 29 1 3.8604 3.2709 0.0104 30 1 5.0816 5.4530 1.0462 31 1 4.8898 4.5802 -0.4932 32 1 5.2829 6.3163 -0.4974 33 1 4.4900 7.9153 1.2581 34 1 3.0774 8.9986 1.2501 35 1 3.0149 7.4614 2.1448 36 1 2.1904 10.8781 -0.7443 37 1 4.5482 1.2659 0.0112 38 1 1.7349 -2.8236 1.0192 39 1 0.8958 -2.5476 -0.5261 40 1 2.5892 -3.0958 -0.5183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270161226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:22 Heat of formation + Delta-G solvation = 36.620264 kcal Electronic energy + Delta-G solvation = -20934.644752 eV Core-core repulsion = 17750.907135 eV Total energy + Delta-G solvation = -3183.737617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.25229 -40.73719 -37.16834 -35.38194 -34.73091 -34.13798 -32.32809 -31.09678 -28.02659 -27.64139 -27.40450 -27.25885 -24.80524 -22.72795 -21.33391 -20.39170 -19.27370 -18.51036 -18.09115 -17.26334 -17.00722 -16.65533 -16.12106 -15.96070 -15.34346 -15.02212 -14.55451 -14.44170 -14.06626 -14.04583 -13.86259 -13.51148 -13.43481 -13.30113 -13.16633 -12.96412 -12.89960 -12.70017 -12.59589 -12.47046 -12.17203 -12.08414 -11.60345 -11.28578 -11.14194 -10.66572 -10.45401 -10.32039 -9.31081 -8.78473 -8.11777 -6.28580 0.00436 0.95043 1.41999 1.43442 1.53599 1.55394 1.92245 2.38336 2.64890 2.76705 3.15418 3.50900 3.65439 4.01226 4.05245 4.20609 4.29841 4.40757 4.48073 4.60748 4.66361 4.70176 4.70389 4.79889 4.82915 4.93515 4.95626 5.03973 5.08058 5.11084 5.38551 5.50576 5.53853 5.56293 5.72253 5.74511 6.00161 6.11297 6.20403 6.62577 6.80129 6.94641 7.36638 7.58087 8.92623 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.003314 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.477024 B = 8446.322352 C = 8559.463072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.123 3.877 3 C -0.261 4.261 4 C 0.049 3.951 5 C -0.248 4.248 6 C 0.530 3.470 7 O -0.621 6.621 8 N -0.601 5.601 9 C 0.081 3.919 10 C 0.260 3.740 11 H 0.008 0.992 12 C -0.131 4.131 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.074 3.926 22 N -0.331 5.331 23 N -0.366 5.366 24 C 0.085 3.915 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.018 0.982 36 H 0.264 0.736 37 H 0.205 0.795 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -24.542 1.614 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.009 4.009 3 C -0.272 4.272 4 C 0.027 3.973 5 C -0.269 4.269 6 C 0.324 3.676 7 O -0.508 6.508 8 N -0.330 5.330 9 C -0.061 4.061 10 C 0.158 3.842 11 H 0.026 0.974 12 C -0.189 4.189 13 C -0.576 4.576 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.558 5.558 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.112 4.112 22 N -0.150 5.150 23 N -0.146 5.146 24 C -0.054 4.054 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.107 0.893 28 H 0.138 0.862 29 H 0.168 0.832 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.222 0.778 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.926 -25.478 1.651 25.548 hybrid contribution -0.230 1.770 -0.604 1.884 sum 0.696 -23.708 1.047 23.741 Atomic orbital electron populations 1.20730 0.84160 1.05673 1.05148 1.22173 0.96053 0.86518 0.96135 1.19231 0.93099 0.92438 1.22434 1.21553 0.99004 0.89357 0.87398 1.21767 1.01879 0.90503 1.12784 1.17823 0.85377 0.87685 0.76736 1.90700 1.18943 1.86026 1.55104 1.48144 1.07560 1.07026 1.70287 1.21853 0.79993 1.02192 1.02093 1.18510 0.94379 0.76885 0.94453 0.97434 1.21858 0.99462 1.02117 0.95492 1.21634 1.33199 0.95710 1.07024 0.92146 1.25769 0.95188 0.97939 0.99740 1.70044 1.38752 1.09869 1.37126 0.85378 0.78024 0.78404 0.79021 1.18912 1.21069 1.19901 1.24434 0.98259 0.91728 0.96741 1.77088 0.97609 1.13746 1.26602 1.48668 1.03390 1.07655 1.54847 1.22324 1.02578 0.75349 1.05134 0.88147 0.87851 0.89348 0.86177 0.83171 0.91815 0.89126 0.91429 0.93514 0.91382 0.96316 0.92663 0.77841 0.88977 0.86534 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.70 71.23 0.69 -0.45 16 2 C 0.12 2.36 7.02 42.18 0.30 2.66 16 3 C -0.26 -6.36 6.08 -20.19 -0.12 -6.48 16 4 C 0.05 1.43 9.33 23.82 0.22 1.66 16 5 C -0.25 -8.19 8.60 22.42 0.19 -8.00 16 6 C 0.53 23.94 7.45 85.13 0.63 24.57 16 7 O -0.62 -33.68 15.43 -4.49 -0.07 -33.75 16 8 N -0.60 -27.46 2.75 -837.19 -2.30 -29.77 16 9 C 0.08 2.75 9.13 127.77 1.17 3.91 16 10 C 0.26 14.32 2.64 44.25 0.12 14.43 16 11 H 0.01 0.50 6.90 -2.39 -0.02 0.49 16 12 C -0.13 -6.65 8.97 71.98 0.65 -6.00 16 13 C -0.54 -30.43 7.99 25.60 0.20 -30.22 16 14 H 0.06 3.33 7.33 -2.91 -0.02 3.31 16 15 C 0.01 0.73 5.30 84.65 0.45 1.17 16 16 N -0.92 -54.49 11.32 21.45 0.24 -54.25 16 17 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.07 1.72 11.39 85.69 0.98 2.69 16 22 N -0.33 -7.78 12.49 -56.18 -0.70 -8.48 16 23 N -0.37 -6.67 3.98 -354.02 -1.41 -8.08 16 24 C 0.09 0.67 11.06 127.77 1.41 2.08 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.58 7.72 -2.39 -0.02 0.56 16 27 H 0.09 1.18 7.61 -2.39 -0.02 1.16 16 28 H 0.12 3.76 7.02 -2.91 -0.02 3.74 16 29 H 0.15 3.89 4.96 -2.91 -0.01 3.88 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.41 6.07 -2.39 -0.01 2.40 16 32 H 0.07 2.44 7.02 -2.39 -0.02 2.43 16 33 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 34 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.21 3.67 7.31 -2.91 -0.02 3.65 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.12 0.26 7.64 -2.39 -0.02 0.24 16 40 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -79.79 333.82 5.71 -74.09 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.04 Total: 12.00 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 6.88 Total: 2.02 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.17 Total: -100.58 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.07 Total: -33.75 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -79.79 5.71 -74.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270161226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.707 kcal (2) G-P(sol) polarization free energy of solvation -79.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds