Wall clock time and date at job start Mon Mar 30 2020 02:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.12195 * 2 1 4 4 C 1.50702 * 126.04420 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47164 * 84.99843 * 4 3 2 6 6 C 1.50694 * 109.47269 * 180.02562 * 5 4 3 7 7 O 1.21293 * 119.99857 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00063 * 180.02562 * 6 5 4 9 9 C 1.37108 * 119.99979 * 179.97438 * 8 6 5 10 10 H 1.07996 * 119.99619 * 140.25543 * 9 8 6 11 11 C 1.38947 * 119.99704 * 320.25965 * 9 8 6 12 12 N 1.31410 * 119.99555 * 161.27777 * 11 9 8 13 13 Si 1.86794 * 120.00234 * 341.27509 * 11 9 8 14 14 H 1.48501 * 109.47115 * 93.61177 * 13 11 9 15 15 H 1.48506 * 109.47378 * 213.61217 * 13 11 9 16 16 H 1.48496 * 109.47276 * 333.61095 * 13 11 9 17 17 C 1.46501 * 120.00336 * 359.97438 * 8 6 5 18 18 C 1.52995 * 117.50215 * 182.39620 * 17 8 6 19 19 C 1.53000 * 117.49705 * 113.73672 * 17 8 6 20 20 C 1.39873 * 107.91820 * 180.02562 * 3 2 1 21 21 N 1.30830 * 108.20096 * 359.97438 * 20 3 2 22 22 N 1.34943 * 126.13013 * 180.02562 * 2 1 3 23 23 C 1.46506 * 126.03594 * 359.95429 * 22 2 1 24 24 H 1.09006 * 109.47072 * 90.00258 * 1 2 3 25 25 H 1.09001 * 109.47298 * 209.99786 * 1 2 3 26 26 H 1.08994 * 109.47562 * 330.00193 * 1 2 3 27 27 H 1.08997 * 109.47462 * 204.99570 * 4 3 2 28 28 H 1.09000 * 109.46739 * 325.00444 * 4 3 2 29 29 H 1.09008 * 109.47143 * 300.00036 * 5 4 3 30 30 H 1.09001 * 109.47309 * 59.99839 * 5 4 3 31 31 H 0.97006 * 119.99876 * 179.97438 * 12 11 9 32 32 H 1.09001 * 115.54551 * 328.07259 * 17 8 6 33 33 H 1.09007 * 117.49704 * 0.02562 * 18 17 8 34 34 H 1.09002 * 117.49650 * 145.01766 * 18 17 8 35 35 H 1.08995 * 117.49362 * 214.98100 * 19 17 8 36 36 H 1.08994 * 117.49819 * 359.97438 * 19 17 8 37 37 H 1.08000 * 125.89858 * 179.97438 * 20 3 2 38 38 H 1.08994 * 109.47560 * 270.02601 * 23 22 2 39 39 H 1.08999 * 109.46996 * 30.03122 * 23 22 2 40 40 H 1.08998 * 109.46579 * 150.02601 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 6 1.5678 2.9742 1.4378 6 6 1.1056 4.4086 1.4383 7 8 1.0068 5.0142 0.3921 8 7 0.8032 5.0187 2.6014 9 6 0.3833 6.3239 2.6019 10 1 -0.4084 6.6361 3.2668 11 6 0.9762 7.2448 1.7468 12 7 0.3626 8.3731 1.4689 13 14 2.6455 6.8789 0.9925 14 1 2.4595 6.2502 -0.3399 15 1 3.4082 8.1440 0.8408 16 1 3.3958 5.9516 1.8770 17 6 0.9231 4.2874 3.8651 18 6 0.5117 5.0171 5.1454 19 6 1.9918 4.7569 4.8543 20 6 3.6334 0.6561 -0.0006 21 7 3.6334 -0.6522 -0.0004 22 7 2.3027 -1.0899 -0.0005 23 6 1.8540 -2.4846 -0.0002 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.6183 3.1589 -0.4338 28 1 0.9303 2.6158 -0.5885 29 1 0.7925 2.3430 1.8722 30 1 2.4806 2.8860 2.0269 31 1 0.7767 9.0162 0.8723 32 1 0.7241 3.2172 3.8096 33 1 0.1514 6.0412 5.0474 34 1 0.0423 4.4267 5.9323 35 1 2.4955 3.9955 5.4498 36 1 2.6059 5.6095 4.5646 37 1 4.5083 1.2893 -0.0011 38 1 1.7429 -2.8303 1.0275 39 1 0.8954 -2.5579 -0.5139 40 1 2.5898 -3.1030 -0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270243817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:33 Heat of formation + Delta-G solvation = 54.787994 kcal Electronic energy + Delta-G solvation = -21843.203040 eV Core-core repulsion = 18660.253235 eV Total energy + Delta-G solvation = -3182.949805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.26251 -40.89240 -38.08816 -35.46507 -34.75389 -34.13177 -33.36799 -31.73627 -28.59439 -27.51473 -26.70658 -24.48672 -23.25915 -22.80937 -21.74471 -20.94785 -20.10344 -18.87658 -17.89983 -17.42705 -17.07204 -16.54848 -16.24652 -15.86257 -15.26334 -15.18410 -15.05019 -14.63792 -14.51746 -14.02353 -13.94825 -13.56687 -13.47369 -13.37866 -13.09467 -12.94128 -12.85988 -12.65086 -12.32970 -12.16058 -12.08129 -11.89004 -11.55567 -11.41059 -11.18128 -10.67043 -10.33701 -10.14972 -9.37607 -9.18659 -8.38264 -6.11785 0.90891 1.23521 1.35860 1.54385 1.69198 1.78766 1.98419 2.47220 2.72487 2.99239 3.26467 3.64086 3.82749 3.93090 4.08975 4.15169 4.19797 4.26251 4.33487 4.38219 4.44846 4.48655 4.65790 4.67383 4.73385 4.76306 4.81746 4.89694 5.03320 5.07202 5.15467 5.27231 5.31888 5.39668 5.46831 5.71213 5.73376 5.87811 6.19009 6.75173 6.79459 6.94557 7.39969 7.92935 8.68964 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.005163 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.648929 B = 5421.654941 C = 5891.390926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.092 3.908 3 C -0.251 4.251 4 C -0.013 4.013 5 C -0.109 4.109 6 C 0.440 3.560 7 O -0.586 6.586 8 N -0.454 5.454 9 C -0.338 4.338 10 H 0.071 0.929 11 C 0.040 3.960 12 N -0.915 5.915 13 Si 0.968 3.032 14 H -0.268 1.268 15 H -0.318 1.318 16 H -0.269 1.269 17 C 0.047 3.953 18 C -0.169 4.169 19 C -0.188 4.188 20 C 0.044 3.956 21 N -0.331 5.331 22 N -0.378 5.378 23 C 0.091 3.909 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.270 0.730 32 H 0.153 0.847 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.064 0.936 37 H 0.190 0.810 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -22.939 2.233 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.036 4.036 3 C -0.263 4.263 4 C -0.052 4.052 5 C -0.149 4.149 6 C 0.233 3.767 7 O -0.473 6.473 8 N -0.174 5.174 9 C -0.465 4.465 10 H 0.089 0.911 11 C -0.164 4.164 12 N -0.553 5.553 13 Si 0.801 3.199 14 H -0.196 1.196 15 H -0.249 1.249 16 H -0.194 1.194 17 C -0.058 4.058 18 C -0.206 4.206 19 C -0.226 4.226 20 C -0.140 4.140 21 N -0.153 5.153 22 N -0.161 5.161 23 C -0.049 4.049 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.207 0.793 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.396 -23.727 1.661 23.905 hybrid contribution 0.293 1.642 -0.491 1.739 sum 2.690 -22.084 1.170 22.278 Atomic orbital electron populations 1.20604 0.85041 1.05085 1.04433 1.21265 0.95800 0.86541 1.00019 1.19835 0.92857 0.95151 1.18418 1.19383 1.00869 0.90036 0.94897 1.21536 1.03141 0.90728 0.99472 1.21445 0.81627 0.90309 0.83355 1.90479 1.56846 1.67338 1.32597 1.43395 1.59286 1.10281 1.04480 1.18703 1.18474 0.84282 1.25015 0.91107 1.25939 1.00649 0.94145 0.95645 1.69827 1.38887 1.11079 1.35555 0.85439 0.78722 0.75220 0.80567 1.19553 1.24866 1.19409 1.22224 1.05455 0.96564 0.81526 1.23159 0.97742 1.01839 0.97877 1.23311 0.92167 1.03682 1.03462 1.24012 0.98415 0.92116 0.99498 1.77254 0.98261 1.13125 1.26621 1.48722 1.03216 1.07286 1.56861 1.22180 1.02186 0.75804 1.04683 0.89172 0.88436 0.89753 0.93082 0.91692 0.87279 0.88891 0.92042 0.83007 0.90754 0.85278 0.85198 0.91774 0.79310 0.89373 0.87037 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 9.58 71.24 0.68 -0.75 16 2 C 0.09 2.07 6.93 41.41 0.29 2.35 16 3 C -0.25 -6.88 5.35 -20.14 -0.11 -6.98 16 4 C -0.01 -0.41 4.54 29.85 0.14 -0.27 16 5 C -0.11 -3.55 4.31 29.85 0.13 -3.42 16 6 C 0.44 20.22 5.88 87.65 0.52 20.74 16 7 O -0.59 -32.37 10.86 -3.07 -0.03 -32.40 16 8 N -0.45 -21.32 2.56 -613.14 -1.57 -22.89 16 9 C -0.34 -19.36 8.77 84.04 0.74 -18.62 16 10 H 0.07 4.31 6.95 -2.91 -0.02 4.29 16 11 C 0.04 2.42 4.88 84.93 0.41 2.83 16 12 N -0.92 -58.82 13.96 21.66 0.30 -58.52 16 13 Si 0.97 52.94 24.59 68.60 1.69 54.63 16 14 H -0.27 -15.40 6.09 99.48 0.61 -14.79 16 15 H -0.32 -17.12 7.11 99.48 0.71 -16.41 16 16 H -0.27 -13.76 7.11 99.48 0.71 -13.05 16 17 C 0.05 1.60 5.85 44.99 0.26 1.87 16 18 C -0.17 -5.40 9.80 30.62 0.30 -5.10 16 19 C -0.19 -5.89 10.37 30.62 0.32 -5.58 16 20 C 0.04 1.21 11.96 85.24 1.02 2.23 16 21 N -0.33 -9.07 12.57 -57.02 -0.72 -9.79 16 22 N -0.38 -8.22 4.01 -356.03 -1.43 -9.65 16 23 C 0.09 1.03 11.10 127.77 1.42 2.45 16 24 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.10 0.92 7.72 -2.39 -0.02 0.90 16 26 H 0.08 1.44 7.51 -2.39 -0.02 1.43 16 27 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 28 H 0.06 2.17 7.97 -2.39 -0.02 2.15 16 29 H 0.11 2.87 7.19 -2.38 -0.02 2.85 16 30 H 0.09 2.81 8.11 -2.39 -0.02 2.79 16 31 H 0.27 16.53 8.31 -92.70 -0.77 15.76 16 32 H 0.15 3.94 6.99 -2.39 -0.02 3.92 16 33 H 0.07 2.95 6.49 -2.38 -0.02 2.93 16 34 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 0.66 7.66 -2.39 -0.02 0.65 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -81.20 328.09 5.28 -75.92 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.93 Total: 10.95 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 6.11 Total: -8.25 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.41 Total: -100.85 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.03 Total: -32.40 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 1.69 Total: 54.63 kcal Total: -81.20 5.28 -75.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270243817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.709 kcal (2) G-P(sol) polarization free energy of solvation -81.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds