Wall clock time and date at job start Mon Mar 30 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35229 * 126.07045 * 2 1 4 4 C 1.40409 * 107.87057 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97443 * 180.26317 * 4 3 2 6 6 C 1.34775 * 120.00331 * 359.71943 * 5 4 3 7 7 O 1.21288 * 119.99525 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00025 * 179.97438 * 6 5 4 9 9 H 1.08996 * 115.55589 * 325.72094 * 8 6 5 10 10 C 1.53006 * 117.49699 * 111.39485 * 8 6 5 11 11 C 1.53001 * 117.49375 * 180.02562 * 8 6 5 12 12 C 1.53001 * 117.50398 * 359.97438 * 11 8 6 13 13 C 1.52998 * 117.49772 * 145.02532 * 11 8 6 14 14 N 1.31224 * 108.05071 * 0.02562 * 4 3 2 15 15 N 1.34974 * 126.06743 * 179.97438 * 2 1 3 16 16 C 1.46494 * 125.97468 * 0.05100 * 15 2 1 17 17 C 1.50693 * 109.47241 * 269.99989 * 16 15 2 18 18 H 1.08001 * 120.00363 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00187 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99780 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00156 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47166 * 89.99974 * 21 19 17 23 23 H 1.48499 * 109.47250 * 210.00140 * 21 19 17 24 24 H 1.48504 * 109.47261 * 330.00211 * 21 19 17 25 25 H 1.08999 * 109.47145 * 270.03765 * 1 2 3 26 26 H 1.09004 * 109.47116 * 30.03740 * 1 2 3 27 27 H 1.09008 * 109.47564 * 150.03754 * 1 2 3 28 28 H 1.08000 * 126.06502 * 0.02562 * 3 2 1 29 29 H 0.97002 * 119.99613 * 179.71754 * 5 4 3 30 30 H 1.09001 * 117.49741 * 214.97777 * 10 8 6 31 31 H 1.09003 * 117.49594 * 359.97438 * 10 8 6 32 32 H 1.09000 * 109.46537 * 60.00289 * 12 11 8 33 33 H 1.08993 * 109.47270 * 179.97438 * 12 11 8 34 34 H 1.08994 * 109.46964 * 300.00308 * 12 11 8 35 35 H 1.09007 * 109.47467 * 59.99472 * 13 11 8 36 36 H 1.09003 * 109.47587 * 179.97438 * 13 11 8 37 37 H 1.09004 * 109.46954 * 299.99492 * 13 11 8 38 38 H 1.09001 * 109.47490 * 30.00198 * 16 15 2 39 39 H 1.09000 * 109.46909 * 150.00220 * 16 15 2 40 40 H 0.97000 * 119.99996 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7734 1.4749 0.0060 6 6 4.6367 2.8157 0.0055 7 8 3.5302 3.3123 0.0009 8 6 5.8586 3.6976 0.0119 9 1 6.7125 3.3139 0.5701 10 6 6.1481 4.5128 -1.2502 11 6 5.6370 5.2115 0.0117 12 6 4.1919 5.7141 0.0043 13 6 6.6312 6.0711 0.7949 14 7 3.6336 -0.6577 0.0004 15 7 2.3016 -1.0910 0.0005 16 6 1.8499 -2.4846 0.0001 17 6 1.6940 -2.9626 1.4206 18 1 1.9094 -2.2950 2.2418 19 6 1.2764 -4.2524 1.6722 20 7 1.0146 -5.0656 0.6723 21 14 1.0825 -4.8446 3.4331 22 1 -0.3010 -4.5706 3.8981 23 1 1.3458 -6.3047 3.4962 24 1 2.0485 -4.1293 4.3052 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8897 -0.5144 27 1 -0.3634 -0.8904 -0.5133 28 1 1.9719 2.1210 0.0004 29 1 5.6583 1.0776 0.0101 30 1 7.1925 4.6655 -1.5221 31 1 5.4549 4.4107 -2.0852 32 1 3.6753 5.3475 0.8914 33 1 4.1862 6.8040 0.0054 34 1 3.6847 5.3486 -0.8885 35 1 7.6334 5.9266 0.3912 36 1 6.3522 7.1212 0.7065 37 1 6.6166 5.7781 1.8447 38 1 0.8917 -2.5559 -0.5145 39 1 2.5850 -3.1046 -0.5133 40 1 0.7204 -5.9728 0.8492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270996639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:15 Heat of formation + Delta-G solvation = 58.377758 kcal Electronic energy + Delta-G solvation = -21087.897824 eV Core-core repulsion = 17905.103683 eV Total energy + Delta-G solvation = -3182.794141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82656 -39.88554 -37.36688 -34.76050 -33.37116 -31.48360 -30.87567 -29.60031 -27.58396 -26.80430 -26.33597 -24.64514 -22.79636 -21.15028 -19.82036 -19.56608 -18.67999 -16.89117 -16.66509 -16.09114 -15.32689 -15.24776 -14.64755 -14.42399 -14.21143 -13.92768 -13.74574 -13.41067 -12.92738 -12.67197 -12.48534 -12.28639 -12.22138 -12.14946 -11.95194 -11.64657 -11.40498 -11.36926 -11.08595 -10.82410 -10.49450 -10.34765 -10.24153 -9.99494 -9.84167 -9.51890 -9.33415 -8.64541 -7.92619 -7.44355 -6.25808 -4.33348 2.26154 2.75642 2.90180 3.21006 3.27442 3.33111 3.47059 3.79288 3.86529 4.29949 4.42283 4.51327 4.60530 4.89447 4.95077 5.07971 5.33120 5.44509 5.45624 5.50409 5.69094 5.73310 5.75401 5.84003 5.90774 5.93548 6.05314 6.10924 6.25768 6.41459 6.46395 6.57811 6.74610 6.93456 7.05429 7.47696 7.66484 7.68812 7.88815 8.05719 8.32440 8.66184 8.75231 9.32922 10.81497 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.003454 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.630454 B = 8105.181680 C = 8308.828465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.290 4.290 4 C 0.264 3.736 5 N -0.629 5.629 6 C 0.548 3.452 7 O -0.511 6.511 8 C -0.185 4.185 9 H 0.124 0.876 10 C -0.147 4.147 11 C -0.091 4.091 12 C -0.105 4.105 13 C -0.117 4.117 14 N -0.322 5.322 15 N -0.317 5.317 16 C 0.258 3.742 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.410 0.590 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 18.454 -2.568 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.321 4.321 4 C 0.011 3.989 5 N -0.276 5.276 6 C 0.334 3.666 7 O -0.385 6.385 8 C -0.207 4.207 9 H 0.142 0.858 10 C -0.184 4.184 11 C -0.092 4.092 12 C -0.162 4.162 13 C -0.174 4.174 14 N -0.152 5.152 15 N -0.099 5.099 16 C 0.141 3.859 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.197 1.197 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.245 0.755 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.884 17.449 -2.623 19.326 hybrid contribution 0.076 -0.300 0.996 1.044 sum 7.960 17.148 -1.626 18.976 Atomic orbital electron populations 1.20331 0.87899 1.02802 1.03160 1.21069 0.94904 0.87202 1.00923 1.21235 0.89718 0.99756 1.21420 1.19012 0.87301 0.89584 1.02996 1.42481 1.07476 1.05072 1.72526 1.19632 0.90049 0.81032 0.75905 1.90641 1.26636 1.73462 1.47802 1.22288 0.98672 0.93896 1.05820 0.85774 1.23255 1.02606 1.01385 0.91145 1.21602 0.98076 0.90251 0.99279 1.21384 0.91957 0.98880 1.04006 1.21406 0.97179 0.99102 0.99696 1.77260 0.99910 1.08564 1.29485 1.48985 1.00988 1.07772 1.52180 1.19683 0.95959 0.71345 0.98935 1.21322 1.46768 0.97940 0.91383 0.91772 1.24931 0.94682 0.96052 0.98135 1.69921 1.44940 1.07123 1.31020 0.86350 0.78674 0.77906 0.83732 1.20283 1.20866 1.19698 0.90436 0.90840 0.90867 0.82341 0.75523 0.87791 0.88082 0.91175 0.93308 0.91500 0.92296 0.91607 0.91898 0.92812 0.93019 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.00 0.36 -1.08 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -6.03 9.52 -39.84 -0.38 -6.41 16 4 C 0.26 5.44 8.11 -154.39 -1.25 4.19 16 5 N -0.63 -9.97 5.45 -11.13 -0.06 -10.03 16 6 C 0.55 7.95 7.56 -10.99 -0.08 7.87 16 7 O -0.51 -8.71 10.24 5.55 0.06 -8.65 16 8 C -0.19 -1.90 5.91 -91.77 -0.54 -2.44 16 9 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 10 C -0.15 -1.27 9.53 -26.71 -0.25 -1.52 16 11 C -0.09 -0.86 2.70 -154.50 -0.42 -1.28 16 12 C -0.11 -1.14 8.09 37.16 0.30 -0.84 16 13 C -0.12 -0.83 9.85 37.16 0.37 -0.46 16 14 N -0.32 -7.54 12.59 31.44 0.40 -7.15 16 15 N -0.32 -7.62 3.59 -58.34 -0.21 -7.83 16 16 C 0.26 6.69 5.99 -5.20 -0.03 6.66 16 17 C -0.54 -14.88 9.39 -34.44 -0.32 -15.20 16 18 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 21 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.27 7.07 -51.92 -0.37 0.90 16 28 H 0.16 3.17 5.92 -52.49 -0.31 2.86 16 29 H 0.41 5.31 8.82 -40.82 -0.36 4.95 16 30 H 0.10 0.67 8.05 -51.93 -0.42 0.26 16 31 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 32 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 33 H 0.05 0.43 7.92 -51.93 -0.41 0.02 16 34 H 0.07 0.82 7.02 -51.93 -0.36 0.45 16 35 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 36 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 39 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -31.74 334.95 -7.85 -39.58 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.87 Total: 4.73 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.92 Total: -7.46 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.86 Total: -49.44 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.06 Total: -8.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.74 -7.85 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270996639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.960 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds