Wall clock time and date at job start Mon Mar 30 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35229 * 126.07045 * 2 1 4 4 C 1.40409 * 107.87057 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97443 * 180.26317 * 4 3 2 6 6 C 1.34775 * 120.00331 * 359.71943 * 5 4 3 7 7 O 1.21288 * 119.99525 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00025 * 179.97438 * 6 5 4 9 9 H 1.08996 * 115.55589 * 325.72094 * 8 6 5 10 10 C 1.53006 * 117.49699 * 111.39485 * 8 6 5 11 11 C 1.53001 * 117.49375 * 180.02562 * 8 6 5 12 12 C 1.53001 * 117.50398 * 359.97438 * 11 8 6 13 13 C 1.52998 * 117.49772 * 145.02532 * 11 8 6 14 14 N 1.31224 * 108.05071 * 0.02562 * 4 3 2 15 15 N 1.34974 * 126.06743 * 179.97438 * 2 1 3 16 16 C 1.46494 * 125.97468 * 0.05100 * 15 2 1 17 17 C 1.50693 * 109.47241 * 269.99989 * 16 15 2 18 18 H 1.08001 * 120.00363 * 0.02562 * 17 16 15 19 19 C 1.37885 * 120.00187 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99780 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00156 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47166 * 89.99974 * 21 19 17 23 23 H 1.48499 * 109.47250 * 210.00140 * 21 19 17 24 24 H 1.48504 * 109.47261 * 330.00211 * 21 19 17 25 25 H 1.08999 * 109.47145 * 270.03765 * 1 2 3 26 26 H 1.09004 * 109.47116 * 30.03740 * 1 2 3 27 27 H 1.09008 * 109.47564 * 150.03754 * 1 2 3 28 28 H 1.08000 * 126.06502 * 0.02562 * 3 2 1 29 29 H 0.97002 * 119.99613 * 179.71754 * 5 4 3 30 30 H 1.09001 * 117.49741 * 214.97777 * 10 8 6 31 31 H 1.09003 * 117.49594 * 359.97438 * 10 8 6 32 32 H 1.09000 * 109.46537 * 60.00289 * 12 11 8 33 33 H 1.08993 * 109.47270 * 179.97438 * 12 11 8 34 34 H 1.08994 * 109.46964 * 300.00308 * 12 11 8 35 35 H 1.09007 * 109.47467 * 59.99472 * 13 11 8 36 36 H 1.09003 * 109.47587 * 179.97438 * 13 11 8 37 37 H 1.09004 * 109.46954 * 299.99492 * 13 11 8 38 38 H 1.09001 * 109.47490 * 30.00198 * 16 15 2 39 39 H 1.09000 * 109.46909 * 150.00220 * 16 15 2 40 40 H 0.97000 * 119.99996 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7734 1.4749 0.0060 6 6 4.6367 2.8157 0.0055 7 8 3.5302 3.3123 0.0009 8 6 5.8586 3.6976 0.0119 9 1 6.7125 3.3139 0.5701 10 6 6.1481 4.5128 -1.2502 11 6 5.6370 5.2115 0.0117 12 6 4.1919 5.7141 0.0043 13 6 6.6312 6.0711 0.7949 14 7 3.6336 -0.6577 0.0004 15 7 2.3016 -1.0910 0.0005 16 6 1.8499 -2.4846 0.0001 17 6 1.6940 -2.9626 1.4206 18 1 1.9094 -2.2950 2.2418 19 6 1.2764 -4.2524 1.6722 20 7 1.0146 -5.0656 0.6723 21 14 1.0825 -4.8446 3.4331 22 1 -0.3010 -4.5706 3.8981 23 1 1.3458 -6.3047 3.4962 24 1 2.0485 -4.1293 4.3052 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8897 -0.5144 27 1 -0.3634 -0.8904 -0.5133 28 1 1.9719 2.1210 0.0004 29 1 5.6583 1.0776 0.0101 30 1 7.1925 4.6655 -1.5221 31 1 5.4549 4.4107 -2.0852 32 1 3.6753 5.3475 0.8914 33 1 4.1862 6.8040 0.0054 34 1 3.6847 5.3486 -0.8885 35 1 7.6334 5.9266 0.3912 36 1 6.3522 7.1212 0.7065 37 1 6.6166 5.7781 1.8447 38 1 0.8917 -2.5559 -0.5145 39 1 2.5850 -3.1046 -0.5133 40 1 0.7204 -5.9728 0.8492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270996639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:15 Heat of formation + Delta-G solvation = 39.621542 kcal Electronic energy + Delta-G solvation = -21088.711155 eV Core-core repulsion = 17905.103683 eV Total energy + Delta-G solvation = -3183.607472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.34494 -41.11506 -38.35115 -36.25739 -35.30564 -33.09235 -32.66213 -30.42072 -28.66463 -28.29490 -27.89039 -25.93075 -24.55202 -22.36715 -21.29098 -20.82204 -19.79391 -18.81928 -18.01315 -17.59270 -17.05676 -16.54328 -16.22789 -15.77753 -15.46882 -15.11444 -14.78438 -14.49704 -14.34253 -14.09499 -13.82328 -13.71920 -13.50012 -13.43982 -13.16337 -12.88947 -12.85391 -12.67325 -12.64437 -12.26631 -12.12237 -12.06825 -11.54396 -11.35644 -11.16693 -10.81264 -10.74659 -10.47118 -9.60179 -9.15069 -8.34425 -6.52314 0.88123 1.30110 1.36982 1.38310 1.40302 1.50298 2.13705 2.27176 2.39212 2.80084 2.95238 3.51346 3.67791 3.84946 3.87463 4.14080 4.16043 4.22606 4.42578 4.68053 4.69291 4.79293 4.86607 4.87211 4.87800 4.96388 4.97033 5.03249 5.10034 5.13341 5.13710 5.16121 5.25355 5.38009 5.51964 5.58006 5.79185 5.93789 6.24224 6.28931 6.60053 6.99884 7.14307 7.18730 8.71659 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.003454 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.630454 B = 8105.181680 C = 8308.828465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 C -0.299 4.299 4 C 0.272 3.728 5 N -0.624 5.624 6 C 0.543 3.457 7 O -0.539 6.539 8 C -0.191 4.191 9 H 0.152 0.848 10 C -0.131 4.131 11 C -0.094 4.094 12 C -0.104 4.104 13 C -0.113 4.113 14 N -0.360 5.360 15 N -0.343 5.343 16 C 0.275 3.725 17 C -0.554 4.554 18 H 0.048 0.952 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.276 1.276 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.167 0.833 29 H 0.423 0.577 30 H 0.136 0.864 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.024 0.976 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 20.016 -1.887 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.330 4.330 4 C 0.018 3.982 5 N -0.273 5.273 6 C 0.332 3.668 7 O -0.414 6.414 8 C -0.212 4.212 9 H 0.169 0.831 10 C -0.168 4.168 11 C -0.095 4.095 12 C -0.161 4.161 13 C -0.170 4.170 14 N -0.191 5.191 15 N -0.125 5.125 16 C 0.156 3.844 17 C -0.592 4.592 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.201 1.201 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.184 0.816 29 H 0.261 0.739 30 H 0.154 0.846 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.955 19.036 -1.953 21.128 hybrid contribution -0.240 -0.655 0.727 1.008 sum 8.715 18.381 -1.226 20.379 Atomic orbital electron populations 1.20468 0.85323 1.04215 1.03947 1.21763 0.96679 0.86500 0.99474 1.21428 0.89927 0.99878 1.21752 1.19390 0.88981 0.89231 1.00595 1.42699 1.06807 1.05251 1.72546 1.20548 0.91280 0.80574 0.74379 1.90623 1.28303 1.73727 1.48734 1.22354 0.97358 0.93550 1.07971 0.83058 1.23377 1.04078 0.99320 0.90047 1.21739 0.97731 0.89733 1.00268 1.21316 0.92883 1.00044 1.01848 1.21419 0.97332 0.98949 0.99277 1.77178 1.00061 1.10081 1.31781 1.48786 1.01774 1.07525 1.54437 1.19244 0.94899 0.72406 0.97820 1.21430 1.47664 0.98405 0.91726 0.93325 1.25744 0.93893 0.95870 1.02312 1.70003 1.45018 1.07583 1.33019 0.85341 0.78991 0.77586 0.78482 1.18881 1.19813 1.20109 0.89814 0.87570 0.91258 0.81572 0.73933 0.84632 0.89279 0.93495 0.91424 0.93488 0.90394 0.90795 0.91998 0.93002 0.95798 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 10.11 71.23 0.72 -2.06 16 2 C 0.09 3.72 6.92 41.38 0.29 4.01 16 3 C -0.30 -12.51 9.52 22.10 0.21 -12.30 16 4 C 0.27 11.36 8.11 133.32 1.08 12.44 16 5 N -0.62 -19.51 5.45 -307.52 -1.68 -21.19 16 6 C 0.54 15.35 7.56 87.66 0.66 16.02 16 7 O -0.54 -18.32 10.24 -3.06 -0.03 -18.35 16 8 C -0.19 -3.47 5.91 -11.54 -0.07 -3.54 16 9 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 10 C -0.13 -1.89 9.53 30.60 0.29 -1.60 16 11 C -0.09 -1.54 2.70 -52.17 -0.14 -1.68 16 12 C -0.10 -2.16 8.09 71.98 0.58 -1.58 16 13 C -0.11 -1.22 9.85 71.98 0.71 -0.51 16 14 N -0.36 -17.38 12.59 -54.45 -0.69 -18.06 16 15 N -0.34 -16.99 3.59 -338.48 -1.22 -18.21 16 16 C 0.28 14.81 5.99 85.63 0.51 15.32 16 17 C -0.55 -31.51 9.39 25.60 0.24 -31.27 16 18 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 19 C 0.02 1.26 5.46 84.66 0.46 1.72 16 20 N -0.92 -52.23 13.29 21.45 0.28 -51.95 16 21 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.07 2.41 7.07 -2.38 -0.02 2.39 16 28 H 0.17 6.67 5.92 -2.91 -0.02 6.65 16 29 H 0.42 10.63 8.82 -92.71 -0.82 9.81 16 30 H 0.14 1.15 8.05 -2.39 -0.02 1.13 16 31 H 0.09 1.54 8.05 -2.39 -0.02 1.52 16 32 H 0.05 1.18 7.26 -2.39 -0.02 1.17 16 33 H 0.07 1.11 7.92 -2.39 -0.02 1.09 16 34 H 0.05 1.14 7.02 -2.39 -0.02 1.13 16 35 H 0.08 0.57 7.90 -2.38 -0.02 0.55 16 36 H 0.07 0.70 7.92 -2.39 -0.02 0.68 16 37 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.05 2.76 7.04 -2.39 -0.02 2.74 16 39 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.03 334.95 4.48 -65.54 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.23 Total: 21.85 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.55 Total: -5.04 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -3.29 Total: -109.40 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.03 Total: -18.35 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.03 4.48 -65.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270996639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.163 kcal (2) G-P(sol) polarization free energy of solvation -70.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds