Wall clock time and date at job start Mon Mar 30 2020 02:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 C 1.52994 * 112.84858 * 50.33378 * 8 6 5 10 10 C 1.53781 * 113.61595 * 279.13702 * 8 6 5 11 11 C 1.53954 * 87.02094 * 220.05113 * 10 8 6 12 12 C 1.53778 * 113.61142 * 181.53209 * 8 6 5 13 13 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 14 14 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 15 15 C 1.46498 * 125.97992 * 0.03696 * 14 2 1 16 16 C 1.50700 * 109.47292 * 89.99633 * 15 14 2 17 17 H 1.08004 * 119.99768 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99858 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99583 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00113 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47086 * 89.99906 * 20 18 16 22 22 H 1.48505 * 109.47059 * 210.00082 * 20 18 16 23 23 H 1.48498 * 109.47136 * 329.99729 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 28 28 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 29 29 H 1.09005 * 109.46871 * 69.66462 * 9 8 6 30 30 H 1.09000 * 109.47099 * 189.66596 * 9 8 6 31 31 H 1.08997 * 109.47481 * 309.66849 * 9 8 6 32 32 H 1.09006 * 113.61377 * 334.57144 * 10 8 6 33 33 H 1.09000 * 113.61150 * 105.46790 * 10 8 6 34 34 H 1.09001 * 113.53694 * 270.81518 * 11 10 8 35 35 H 1.08999 * 113.74402 * 139.94141 * 11 10 8 36 36 H 1.09003 * 113.61469 * 254.52624 * 12 8 6 37 37 H 1.09002 * 113.61982 * 25.42992 * 12 8 6 38 38 H 1.08990 * 109.47339 * 210.00043 * 15 14 2 39 39 H 1.09005 * 109.46799 * 329.99909 * 15 14 2 40 40 H 0.97003 * 119.99786 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 6 6.8673 3.3220 -1.0662 10 6 6.4888 3.8688 1.4134 11 6 6.7149 5.3454 1.0412 12 6 5.5337 5.2000 0.0674 13 7 3.6337 -0.6577 -0.0036 14 7 2.3016 -1.0910 -0.0059 15 6 1.8501 -2.4846 -0.0142 16 6 1.6959 -2.9543 -1.4379 17 1 1.9130 -2.2820 -2.2548 18 6 1.2776 -4.2422 -1.6974 19 7 1.1435 -4.6521 -2.9399 20 14 0.9014 -5.4047 -0.2845 21 1 -0.5299 -5.2805 0.0910 22 1 1.1839 -6.8010 -0.7038 23 1 1.7513 -5.0568 0.8824 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 -0.0006 28 1 5.6584 1.0776 0.0055 29 1 6.4578 3.5740 -2.0444 30 1 7.7945 3.8727 -0.9076 31 1 7.0683 2.2516 -1.0213 32 1 5.7833 3.7279 2.2323 33 1 7.4120 3.3048 1.5471 34 1 7.6687 5.5285 0.5464 35 1 6.5229 6.0388 1.8601 36 1 5.6869 5.7094 -0.8840 37 1 4.5665 5.4239 0.5176 38 1 2.5844 -3.1076 0.4963 39 1 0.8911 -2.5589 0.4987 40 1 0.8489 -5.5581 -3.1225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271131463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:32 Heat of formation + Delta-G solvation = 57.736301 kcal Electronic energy + Delta-G solvation = -21316.660131 eV Core-core repulsion = 18133.838175 eV Total energy + Delta-G solvation = -3182.821957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04397 -40.19559 -37.80452 -34.88106 -33.32145 -31.62552 -31.14167 -29.80596 -27.20804 -26.41251 -25.90805 -25.14290 -22.75042 -21.67816 -19.81774 -19.67600 -18.33351 -17.12370 -17.00368 -16.28359 -15.50998 -15.45213 -15.03481 -14.63079 -14.43888 -13.88863 -13.63104 -13.24152 -12.91748 -12.63269 -12.58055 -12.55041 -12.38142 -12.27785 -11.99842 -11.57416 -11.56167 -11.29851 -11.14292 -10.81181 -10.75085 -10.56115 -10.52748 -9.97137 -9.92465 -9.58055 -9.42926 -8.79409 -7.99572 -7.48324 -6.27145 -4.30411 2.29858 2.72852 2.86701 3.14097 3.22481 3.23138 3.66062 3.78211 4.18166 4.20778 4.27396 4.49048 4.53420 4.77230 5.00953 5.17605 5.26746 5.37792 5.39825 5.55429 5.55961 5.62143 5.64736 5.77091 5.78785 5.87095 5.96976 6.02274 6.17696 6.21914 6.37147 6.45181 6.55783 6.60944 6.75155 7.28050 7.41203 7.60042 7.85582 8.27303 8.30891 8.57864 8.78510 9.27992 10.85353 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034626 B = 0.003669 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.446739 B = 7629.750310 C = 7901.958449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.094 3.906 3 C -0.287 4.287 4 C 0.267 3.733 5 N -0.629 5.629 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.106 4.106 9 C -0.130 4.130 10 C -0.123 4.123 11 C -0.140 4.140 12 C -0.113 4.113 13 N -0.318 5.318 14 N -0.317 5.317 15 C 0.232 3.768 16 C -0.541 4.541 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.886 5.886 20 Si 0.873 3.127 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.263 1.263 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.160 0.840 28 H 0.410 0.590 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.069 16.504 8.242 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.318 4.318 4 C 0.014 3.986 5 N -0.276 5.276 6 C 0.319 3.681 7 O -0.389 6.389 8 C -0.109 4.109 9 C -0.187 4.187 10 C -0.161 4.161 11 C -0.177 4.177 12 C -0.150 4.150 13 N -0.149 5.149 14 N -0.099 5.099 15 C 0.113 3.887 16 C -0.580 4.580 17 H 0.099 0.901 18 C -0.125 4.125 19 N -0.523 5.523 20 Si 0.699 3.301 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.188 1.188 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.178 0.822 28 H 0.245 0.755 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.907 15.531 8.114 19.657 hybrid contribution -0.175 -0.472 0.445 0.672 sum 8.732 15.059 8.559 19.398 Atomic orbital electron populations 1.20407 0.87831 1.04199 1.02454 1.21064 0.94919 0.86987 1.00679 1.21265 0.89749 0.99814 1.20988 1.19050 0.87464 0.89553 1.02573 1.42565 1.07348 1.05233 1.72490 1.20444 0.90953 0.81188 0.75509 1.90622 1.26675 1.73896 1.47729 1.22154 0.94093 0.96165 0.98536 1.21632 0.97736 1.02051 0.97307 1.22988 1.00934 0.97367 0.94769 1.22853 0.98848 0.96378 0.99662 1.22888 0.99590 0.92214 1.00351 1.77254 0.99385 1.08688 1.29549 1.48511 1.01275 1.06990 1.53134 1.19987 0.95273 0.73773 0.99694 1.21186 1.47368 0.99066 0.90347 0.90115 1.24812 0.94484 0.97454 0.95786 1.69877 1.45622 1.18381 1.18440 0.86900 0.79449 0.81003 0.82785 1.19590 1.20487 1.18801 0.91081 0.89832 0.90361 0.82219 0.75490 0.91402 0.91057 0.91735 0.89528 0.90430 0.89872 0.90965 0.90821 0.88567 0.93229 0.93668 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -5.95 9.52 -39.83 -0.38 -6.33 16 4 C 0.27 5.46 8.11 -154.38 -1.25 4.21 16 5 N -0.63 -9.91 5.34 -11.13 -0.06 -9.97 16 6 C 0.53 7.80 6.88 -10.98 -0.08 7.73 16 7 O -0.52 -9.19 13.04 5.55 0.07 -9.12 16 8 C -0.11 -1.06 1.25 -154.85 -0.19 -1.26 16 9 C -0.13 -1.06 8.98 37.15 0.33 -0.73 16 10 C -0.12 -1.01 7.21 -25.83 -0.19 -1.20 16 11 C -0.14 -0.99 7.74 -25.83 -0.20 -1.19 16 12 C -0.11 -1.04 6.99 -25.92 -0.18 -1.22 16 13 N -0.32 -7.33 12.59 31.44 0.40 -6.93 16 14 N -0.32 -7.43 3.59 -58.33 -0.21 -7.64 16 15 C 0.23 5.61 4.88 -5.19 -0.03 5.59 16 16 C -0.54 -15.22 9.94 -34.44 -0.34 -15.57 16 17 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 20 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.08 1.51 7.71 -51.93 -0.40 1.10 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.16 3.22 5.92 -52.49 -0.31 2.91 16 28 H 0.41 5.30 7.81 -40.82 -0.32 4.98 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.44 7.34 -51.93 -0.38 0.06 16 31 H 0.06 0.51 7.11 -51.93 -0.37 0.14 16 32 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.08 0.48 7.64 -51.93 -0.40 0.08 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.10 1.04 7.45 -51.93 -0.39 0.65 16 38 H 0.05 1.21 7.20 -51.93 -0.37 0.83 16 39 H 0.05 1.00 7.07 -51.93 -0.37 0.64 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -33.31 328.99 -7.40 -40.70 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.85 Total: 5.75 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.81 Total: -7.62 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.90 Total: -50.13 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.31 -7.40 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271131463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.441 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds