Wall clock time and date at job start Mon Mar 30 2020 02:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 C 1.52994 * 112.84858 * 50.33378 * 8 6 5 10 10 C 1.53781 * 113.61595 * 279.13702 * 8 6 5 11 11 C 1.53954 * 87.02094 * 220.05113 * 10 8 6 12 12 C 1.53778 * 113.61142 * 181.53209 * 8 6 5 13 13 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 14 14 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 15 15 C 1.46498 * 125.97992 * 0.03696 * 14 2 1 16 16 C 1.50700 * 109.47292 * 89.99633 * 15 14 2 17 17 H 1.08004 * 119.99768 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99858 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99583 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00113 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47086 * 89.99906 * 20 18 16 22 22 H 1.48505 * 109.47059 * 210.00082 * 20 18 16 23 23 H 1.48498 * 109.47136 * 329.99729 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 28 28 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 29 29 H 1.09005 * 109.46871 * 69.66462 * 9 8 6 30 30 H 1.09000 * 109.47099 * 189.66596 * 9 8 6 31 31 H 1.08997 * 109.47481 * 309.66849 * 9 8 6 32 32 H 1.09006 * 113.61377 * 334.57144 * 10 8 6 33 33 H 1.09000 * 113.61150 * 105.46790 * 10 8 6 34 34 H 1.09001 * 113.53694 * 270.81518 * 11 10 8 35 35 H 1.08999 * 113.74402 * 139.94141 * 11 10 8 36 36 H 1.09003 * 113.61469 * 254.52624 * 12 8 6 37 37 H 1.09002 * 113.61982 * 25.42992 * 12 8 6 38 38 H 1.08990 * 109.47339 * 210.00043 * 15 14 2 39 39 H 1.09005 * 109.46799 * 329.99909 * 15 14 2 40 40 H 0.97003 * 119.99786 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 6 6.8673 3.3220 -1.0662 10 6 6.4888 3.8688 1.4134 11 6 6.7149 5.3454 1.0412 12 6 5.5337 5.2000 0.0674 13 7 3.6337 -0.6577 -0.0036 14 7 2.3016 -1.0910 -0.0059 15 6 1.8501 -2.4846 -0.0142 16 6 1.6959 -2.9543 -1.4379 17 1 1.9130 -2.2820 -2.2548 18 6 1.2776 -4.2422 -1.6974 19 7 1.1435 -4.6521 -2.9399 20 14 0.9014 -5.4047 -0.2845 21 1 -0.5299 -5.2805 0.0910 22 1 1.1839 -6.8010 -0.7038 23 1 1.7513 -5.0568 0.8824 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 -0.0006 28 1 5.6584 1.0776 0.0055 29 1 6.4578 3.5740 -2.0444 30 1 7.7945 3.8727 -0.9076 31 1 7.0683 2.2516 -1.0213 32 1 5.7833 3.7279 2.2323 33 1 7.4120 3.3048 1.5471 34 1 7.6687 5.5285 0.5464 35 1 6.5229 6.0388 1.8601 36 1 5.6869 5.7094 -0.8840 37 1 4.5665 5.4239 0.5176 38 1 2.5844 -3.1076 0.4963 39 1 0.8911 -2.5589 0.4987 40 1 0.8489 -5.5581 -3.1225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271131463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:31 Heat of formation + Delta-G solvation = 36.144450 kcal Electronic energy + Delta-G solvation = -21317.596424 eV Core-core repulsion = 18133.838175 eV Total energy + Delta-G solvation = -3183.758250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.44422 -41.42358 -38.84161 -36.37532 -35.26195 -33.29705 -32.83669 -30.63393 -28.99407 -27.92685 -26.62260 -26.12773 -24.48325 -22.95493 -21.28891 -21.08630 -19.35792 -19.24878 -18.03700 -17.77656 -17.14369 -16.64680 -16.29271 -15.92833 -15.81070 -15.35892 -14.94433 -14.52078 -14.46621 -13.92228 -13.88091 -13.68692 -13.66576 -13.32127 -13.19938 -13.16239 -12.85909 -12.56468 -12.32989 -12.22781 -12.03203 -11.85454 -11.58099 -11.44390 -11.40337 -11.22145 -10.90766 -10.63385 -9.63522 -9.14821 -8.41932 -6.53540 0.84549 1.26256 1.34366 1.36156 1.42037 1.48322 2.14569 2.25759 2.31354 2.90273 3.37194 3.49999 3.67078 3.82114 3.89135 3.98069 4.05758 4.40984 4.52102 4.56994 4.67362 4.72391 4.73797 4.76774 4.82783 4.87909 4.92464 4.96544 5.06804 5.07353 5.11457 5.18422 5.20438 5.21761 5.29940 5.54040 5.84601 5.97216 6.22296 6.34620 6.50181 6.92880 7.08024 7.10595 8.74829 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034626 B = 0.003669 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.446739 B = 7629.750310 C = 7901.958449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.302 4.302 4 C 0.272 3.728 5 N -0.623 5.623 6 C 0.529 3.471 7 O -0.550 6.550 8 C -0.104 4.104 9 C -0.129 4.129 10 C -0.121 4.121 11 C -0.124 4.124 12 C -0.120 4.120 13 N -0.355 5.355 14 N -0.342 5.342 15 C 0.242 3.758 16 C -0.552 4.552 17 H 0.022 0.978 18 C 0.022 3.978 19 N -0.937 5.937 20 Si 0.952 3.048 21 H -0.250 1.250 22 H -0.278 1.278 23 H -0.245 1.245 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.164 0.836 28 H 0.422 0.578 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.958 17.179 10.319 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.332 4.332 4 C 0.017 3.983 5 N -0.272 5.272 6 C 0.318 3.682 7 O -0.426 6.426 8 C -0.107 4.107 9 C -0.186 4.186 10 C -0.158 4.158 11 C -0.161 4.161 12 C -0.158 4.158 13 N -0.186 5.186 14 N -0.124 5.124 15 C 0.122 3.878 16 C -0.590 4.590 17 H 0.041 0.959 18 C -0.178 4.178 19 N -0.575 5.575 20 Si 0.773 3.227 21 H -0.174 1.174 22 H -0.203 1.203 23 H -0.168 1.168 24 H 0.121 0.879 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.182 0.818 28 H 0.260 0.740 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.825 16.244 10.196 21.549 hybrid contribution -0.421 -0.527 -0.303 0.739 sum 9.404 15.717 9.893 20.816 Atomic orbital electron populations 1.20554 0.85071 1.04467 1.04547 1.21770 0.96768 0.86349 0.99029 1.21446 0.90115 0.99957 1.21717 1.19442 0.89050 0.89321 1.00464 1.42778 1.06738 1.05367 1.72329 1.21518 0.92203 0.80780 0.73748 1.90592 1.28599 1.74301 1.49076 1.22357 0.92455 0.95239 1.00663 1.21685 0.98202 1.02671 0.96048 1.23025 1.01219 0.98736 0.92856 1.22838 0.98646 0.95451 0.99134 1.22931 0.99757 0.91623 1.01463 1.77166 0.99784 1.09979 1.31653 1.48449 1.01869 1.07092 1.55030 1.19781 0.96444 0.74540 0.97038 1.21248 1.47884 0.98807 0.91097 0.95939 1.25849 0.93672 0.99245 0.99057 1.70038 1.46814 1.19290 1.21396 0.85661 0.80524 0.77646 0.78902 1.17353 1.20275 1.16819 0.87913 0.91217 0.88373 0.81839 0.73953 0.92174 0.88092 0.91565 0.90895 0.88308 0.87528 0.90152 0.89957 0.90754 0.93228 0.90933 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.89 9.89 71.24 0.70 -2.18 16 2 C 0.09 3.83 6.92 41.38 0.29 4.12 16 3 C -0.30 -12.65 9.52 22.11 0.21 -12.44 16 4 C 0.27 11.30 8.11 133.33 1.08 12.38 16 5 N -0.62 -19.64 5.34 -307.50 -1.64 -21.28 16 6 C 0.53 15.39 6.88 87.66 0.60 16.00 16 7 O -0.55 -19.91 13.04 -3.05 -0.04 -19.95 16 8 C -0.10 -1.92 1.25 -52.40 -0.07 -1.99 16 9 C -0.13 -1.81 8.98 71.98 0.65 -1.16 16 10 C -0.12 -1.70 7.21 31.18 0.22 -1.48 16 11 C -0.12 -1.36 7.74 31.18 0.24 -1.12 16 12 C -0.12 -2.04 6.99 31.12 0.22 -1.82 16 13 N -0.36 -16.72 12.59 -54.44 -0.69 -17.40 16 14 N -0.34 -16.26 3.59 -338.46 -1.22 -17.48 16 15 C 0.24 11.68 4.88 85.63 0.42 12.10 16 16 C -0.55 -32.06 9.94 25.60 0.25 -31.81 16 17 H 0.02 1.52 8.06 -2.91 -0.02 1.49 16 18 C 0.02 1.22 5.47 84.65 0.46 1.68 16 19 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 20 Si 0.95 40.92 27.47 68.60 1.88 42.81 16 21 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 24 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.07 2.48 7.71 -2.39 -0.02 2.46 16 26 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 27 H 0.16 6.70 5.92 -2.91 -0.02 6.68 16 28 H 0.42 10.77 7.81 -92.71 -0.72 10.04 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 30 H 0.10 0.85 7.34 -2.39 -0.02 0.83 16 31 H 0.07 0.91 7.11 -2.39 -0.02 0.89 16 32 H 0.07 1.25 8.09 -2.38 -0.02 1.23 16 33 H 0.10 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.11 0.74 7.64 -2.39 -0.02 0.72 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.07 1.60 7.45 -2.39 -0.02 1.58 16 38 H 0.05 2.38 7.20 -2.39 -0.02 2.36 16 39 H 0.07 3.09 7.07 -2.38 -0.02 3.07 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -76.19 328.99 4.16 -72.04 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.27 Total: 26.00 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.29 Total: -7.72 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -3.24 Total: -113.18 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.04 Total: -19.95 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.81 kcal Total: -76.19 4.16 -72.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271131463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.181 kcal (2) G-P(sol) polarization free energy of solvation -76.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds