Wall clock time and date at job start Mon Mar 30 2020 02:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47284 * 179.97438 * 9 8 6 11 11 C 1.52998 * 117.50158 * 243.74621 * 10 9 8 12 12 C 1.53001 * 117.50195 * 175.08449 * 10 9 8 13 13 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 14 14 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 15 15 C 1.46509 * 125.97450 * 359.96761 * 14 2 1 16 16 C 1.50698 * 109.47025 * 89.99735 * 15 14 2 17 17 H 1.08000 * 120.00464 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99358 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99496 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47105 * 90.00179 * 20 18 16 22 22 H 1.48499 * 109.46684 * 210.00001 * 20 18 16 23 23 H 1.48503 * 109.47226 * 329.99788 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 28 28 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 29 29 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 30 30 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 31 31 H 1.09003 * 109.46799 * 299.99945 * 9 8 6 32 32 H 1.09003 * 109.47142 * 59.99472 * 9 8 6 33 33 H 1.09007 * 115.54881 * 29.41696 * 10 9 8 34 34 H 1.09008 * 117.49680 * 359.97438 * 11 10 9 35 35 H 1.08994 * 117.50309 * 145.01806 * 11 10 9 36 36 H 1.09001 * 117.50159 * 214.98026 * 12 10 9 37 37 H 1.09006 * 117.49618 * 359.97438 * 12 10 9 38 38 H 1.08994 * 109.46750 * 210.00045 * 15 14 2 39 39 H 1.09004 * 109.46474 * 329.99737 * 15 14 2 40 40 H 0.96998 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 5.4279 5.1658 0.0247 10 6 6.6684 6.0613 0.0288 11 6 6.8900 6.9557 1.2502 12 6 6.4498 7.5717 -0.0802 13 7 3.6337 -0.6577 -0.0036 14 7 2.3017 -1.0909 -0.0059 15 6 1.8500 -2.4847 -0.0128 16 6 1.6945 -2.9553 -1.4359 17 1 1.9108 -2.2836 -2.2535 18 6 1.2770 -4.2437 -1.6941 19 7 1.0140 -5.0617 -0.6985 20 14 1.0848 -4.8273 -3.4582 21 1 2.3659 -5.4131 -3.9281 22 1 0.0159 -5.8560 -3.5255 23 1 0.7198 -3.6768 -4.3233 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 -0.0004 28 1 5.6584 1.0776 0.0049 29 1 6.4547 3.4893 0.9060 30 1 6.4532 3.4983 -0.8739 31 1 4.8320 5.3739 -0.8640 32 1 4.8330 5.3656 0.9159 33 1 7.5509 5.6442 -0.4564 34 1 6.1517 6.9064 2.0507 35 1 7.9182 7.1273 1.5684 36 1 7.1886 8.1483 -0.6367 37 1 5.4221 7.9273 -0.1553 38 1 2.5849 -3.1072 0.4976 39 1 0.8916 -2.5584 0.5012 40 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271133968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:45 Heat of formation + Delta-G solvation = 49.900099 kcal Electronic energy + Delta-G solvation = -20535.813263 eV Core-core repulsion = 17352.651503 eV Total energy + Delta-G solvation = -3183.161760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72511 -39.41289 -37.72654 -34.82371 -33.39812 -32.47937 -31.35206 -30.76146 -26.89075 -26.34816 -25.30534 -22.93575 -22.64042 -21.25852 -20.55186 -19.75900 -19.10654 -16.74577 -16.58814 -16.23889 -15.95622 -15.58734 -15.21694 -14.58266 -14.38422 -14.19984 -13.68341 -13.44381 -12.96320 -12.48522 -12.38319 -12.31994 -12.15693 -11.84931 -11.68231 -11.56456 -11.44016 -11.40584 -11.07491 -10.84452 -10.56731 -10.43391 -10.24667 -10.13749 -9.90710 -9.53398 -9.51524 -8.65164 -7.92969 -7.44802 -6.26160 -4.33945 2.35723 2.80446 2.92709 3.21246 3.27449 3.32371 3.51600 3.73414 3.87459 4.29463 4.40362 4.54913 4.66595 4.71422 4.98579 5.07326 5.07862 5.23309 5.36531 5.39764 5.51475 5.63106 5.71229 5.74549 5.83114 5.89796 5.95517 6.10054 6.13285 6.27021 6.47931 6.57679 6.74336 6.93398 7.04937 7.47355 7.65793 7.67813 7.88427 8.05710 8.29679 8.65893 8.75034 9.32501 10.81051 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.002940 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.667984 B = 9521.486344 C = 9737.249906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.091 3.909 3 C -0.290 4.290 4 C 0.262 3.738 5 N -0.633 5.633 6 C 0.516 3.484 7 O -0.519 6.519 8 C -0.132 4.132 9 C -0.074 4.074 10 C -0.154 4.154 11 C -0.182 4.182 12 C -0.182 4.182 13 N -0.322 5.322 14 N -0.318 5.318 15 C 0.258 3.742 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.410 0.590 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 18.839 2.710 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.009 3.991 5 N -0.281 5.281 6 C 0.302 3.698 7 O -0.392 6.392 8 C -0.172 4.172 9 C -0.112 4.112 10 C -0.172 4.172 11 C -0.219 4.219 12 C -0.219 4.219 13 N -0.152 5.152 14 N -0.100 5.100 15 C 0.141 3.859 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.196 1.196 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.176 0.824 28 H 0.245 0.755 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.745 17.846 2.759 20.064 hybrid contribution 0.063 -0.106 -0.937 0.945 sum 8.808 17.739 1.822 19.889 Atomic orbital electron populations 1.20378 0.87932 1.03864 1.02519 1.21071 0.94919 0.87170 1.00888 1.21248 0.89770 0.99768 1.21337 1.19047 0.87389 0.89616 1.03031 1.42579 1.07456 1.05290 1.72748 1.20756 0.91656 0.81400 0.75953 1.90645 1.27073 1.73850 1.47677 1.21622 0.95868 0.94934 1.04790 1.20932 0.95396 0.91016 1.03849 1.22353 1.00095 0.92108 1.02638 1.23072 1.02363 1.04687 0.91818 1.22976 1.02654 0.95520 1.00704 1.77247 0.99951 1.08584 1.29440 1.48996 1.00992 1.07783 1.52218 1.19686 0.95969 0.71343 0.98917 1.21328 1.46810 0.97981 0.91373 0.91755 1.24931 0.94668 0.96041 0.98151 1.69915 1.44916 1.06966 1.31153 0.86354 0.78018 0.78567 0.83745 1.20337 1.20860 1.19645 0.91091 0.89905 0.90631 0.82379 0.75489 0.88493 0.88530 0.90561 0.90832 0.87686 0.88684 0.88988 0.88928 0.88673 0.93022 0.92798 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -6.05 9.52 -39.83 -0.38 -6.43 16 4 C 0.26 5.37 8.11 -154.38 -1.25 4.12 16 5 N -0.63 -9.69 5.45 -11.13 -0.06 -9.75 16 6 C 0.52 7.17 7.80 -10.98 -0.09 7.08 16 7 O -0.52 -8.99 13.11 5.55 0.07 -8.92 16 8 C -0.13 -1.15 5.66 -27.88 -0.16 -1.31 16 9 C -0.07 -0.67 4.79 -26.73 -0.13 -0.80 16 10 C -0.15 -1.13 5.73 -90.62 -0.52 -1.65 16 11 C -0.18 -1.27 10.18 -26.69 -0.27 -1.54 16 12 C -0.18 -1.29 10.25 -26.69 -0.27 -1.56 16 13 N -0.32 -7.49 12.59 31.44 0.40 -7.10 16 14 N -0.32 -7.62 3.59 -58.32 -0.21 -7.83 16 15 C 0.26 6.67 5.81 -5.19 -0.03 6.64 16 16 C -0.54 -14.84 9.39 -34.44 -0.32 -15.16 16 17 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 20 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.16 3.21 5.92 -52.49 -0.31 2.90 16 28 H 0.41 4.96 8.82 -40.82 -0.36 4.60 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.07 0.74 7.83 -51.93 -0.41 0.33 16 33 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.09 0.67 8.03 -51.92 -0.42 0.26 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.05 1.37 7.65 -51.93 -0.40 0.98 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -32.29 341.79 -8.73 -41.02 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.06 Total: 4.39 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.73 Total: -8.73 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.86 Total: -49.02 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.29 -8.73 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271133968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.916 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds