Wall clock time and date at job start Mon Mar 30 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47284 * 179.97438 * 9 8 6 11 11 C 1.52998 * 117.50158 * 243.74621 * 10 9 8 12 12 C 1.53001 * 117.50195 * 175.08449 * 10 9 8 13 13 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 14 14 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 15 15 C 1.46509 * 125.97450 * 359.96761 * 14 2 1 16 16 C 1.50698 * 109.47025 * 89.99735 * 15 14 2 17 17 H 1.08000 * 120.00464 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99358 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99496 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47105 * 90.00179 * 20 18 16 22 22 H 1.48499 * 109.46684 * 210.00001 * 20 18 16 23 23 H 1.48503 * 109.47226 * 329.99788 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 28 28 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 29 29 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 30 30 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 31 31 H 1.09003 * 109.46799 * 299.99945 * 9 8 6 32 32 H 1.09003 * 109.47142 * 59.99472 * 9 8 6 33 33 H 1.09007 * 115.54881 * 29.41696 * 10 9 8 34 34 H 1.09008 * 117.49680 * 359.97438 * 11 10 9 35 35 H 1.08994 * 117.50309 * 145.01806 * 11 10 9 36 36 H 1.09001 * 117.50159 * 214.98026 * 12 10 9 37 37 H 1.09006 * 117.49618 * 359.97438 * 12 10 9 38 38 H 1.08994 * 109.46750 * 210.00045 * 15 14 2 39 39 H 1.09004 * 109.46474 * 329.99737 * 15 14 2 40 40 H 0.96998 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 5.4279 5.1658 0.0247 10 6 6.6684 6.0613 0.0288 11 6 6.8900 6.9557 1.2502 12 6 6.4498 7.5717 -0.0802 13 7 3.6337 -0.6577 -0.0036 14 7 2.3017 -1.0909 -0.0059 15 6 1.8500 -2.4847 -0.0128 16 6 1.6945 -2.9553 -1.4359 17 1 1.9108 -2.2836 -2.2535 18 6 1.2770 -4.2437 -1.6941 19 7 1.0140 -5.0617 -0.6985 20 14 1.0848 -4.8273 -3.4582 21 1 2.3659 -5.4131 -3.9281 22 1 0.0159 -5.8560 -3.5255 23 1 0.7198 -3.6768 -4.3233 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 -0.0004 28 1 5.6584 1.0776 0.0049 29 1 6.4547 3.4893 0.9060 30 1 6.4532 3.4983 -0.8739 31 1 4.8320 5.3739 -0.8640 32 1 4.8330 5.3656 0.9159 33 1 7.5509 5.6442 -0.4564 34 1 6.1517 6.9064 2.0507 35 1 7.9182 7.1273 1.5684 36 1 7.1886 8.1483 -0.6367 37 1 5.4221 7.9273 -0.1553 38 1 2.5849 -3.1072 0.4976 39 1 0.8916 -2.5584 0.5012 40 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271133968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:44 Heat of formation + Delta-G solvation = 30.998763 kcal Electronic energy + Delta-G solvation = -20536.632886 eV Core-core repulsion = 17352.651503 eV Total energy + Delta-G solvation = -3183.981383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29699 -40.67723 -38.36206 -36.32402 -35.29643 -33.49642 -32.81999 -32.49387 -28.70838 -27.89153 -26.41046 -24.76259 -23.17551 -22.50370 -21.30851 -21.14804 -20.62170 -18.81306 -17.81543 -17.64040 -17.10814 -16.90848 -16.36787 -16.10283 -15.83230 -15.40836 -14.83193 -14.64877 -14.32997 -14.26191 -13.81755 -13.61990 -13.57521 -13.17172 -13.04952 -12.83820 -12.69975 -12.41989 -12.27161 -12.20482 -12.09403 -12.07202 -11.55349 -11.34122 -11.14802 -10.82055 -10.74654 -10.70528 -9.58891 -9.14176 -8.33827 -6.51810 0.92400 1.35102 1.37490 1.40010 1.45371 1.51023 2.22475 2.29320 2.42261 2.95702 2.96822 3.55937 3.80330 3.88485 4.09103 4.12394 4.15255 4.34406 4.41861 4.48430 4.62549 4.74073 4.74926 4.83284 4.85929 4.86787 4.98729 5.00288 5.09100 5.11216 5.13747 5.19186 5.26974 5.32949 5.50128 5.52544 5.79826 5.95468 6.25027 6.31192 6.60903 7.00517 7.17193 7.19313 8.72139 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.002940 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.667984 B = 9521.486344 C = 9737.249906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.086 3.914 3 C -0.301 4.301 4 C 0.270 3.730 5 N -0.626 5.626 6 C 0.514 3.486 7 O -0.554 6.554 8 C -0.118 4.118 9 C -0.072 4.072 10 C -0.153 4.153 11 C -0.182 4.182 12 C -0.187 4.187 13 N -0.359 5.359 14 N -0.344 5.344 15 C 0.276 3.724 16 C -0.554 4.554 17 H 0.049 0.951 18 C 0.023 3.977 19 N -0.918 5.918 20 Si 0.972 3.028 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.270 1.270 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.166 0.834 28 H 0.426 0.574 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.024 0.976 39 H 0.051 0.949 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 20.018 1.976 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.331 4.331 4 C 0.016 3.984 5 N -0.276 5.276 6 C 0.304 3.696 7 O -0.430 6.430 8 C -0.158 4.158 9 C -0.110 4.110 10 C -0.171 4.171 11 C -0.219 4.219 12 C -0.224 4.224 13 N -0.190 5.190 14 N -0.127 5.127 15 C 0.157 3.843 16 C -0.592 4.592 17 H 0.067 0.933 18 C -0.178 4.178 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.194 1.194 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.120 0.880 27 H 0.183 0.817 28 H 0.264 0.736 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.842 19.047 2.036 21.536 hybrid contribution -0.244 -0.340 -0.655 0.777 sum 9.599 18.707 1.381 21.071 Atomic orbital electron populations 1.20501 0.85409 1.04359 1.04101 1.21759 0.96678 0.86519 0.99468 1.21436 0.90103 0.99822 1.21773 1.19446 0.89138 0.89273 1.00544 1.42803 1.06783 1.05424 1.72637 1.21824 0.92878 0.80877 0.74067 1.90622 1.29082 1.74240 1.49053 1.21695 0.93555 0.93040 1.07468 1.20871 0.96009 0.91696 1.02421 1.22330 0.99711 0.91873 1.03193 1.23132 1.02954 1.04258 0.91556 1.23051 1.02689 0.95580 1.01122 1.77167 1.00007 1.10104 1.31698 1.48798 1.01830 1.07513 1.54524 1.19240 0.94878 0.72418 0.97788 1.21432 1.47636 0.98399 0.91733 0.93305 1.25740 0.93909 0.95867 1.02316 1.69996 1.45025 1.07419 1.33142 0.85350 0.78313 0.78195 0.78604 1.19933 1.19454 1.19448 0.88881 0.91416 0.87996 0.81715 0.73616 0.85674 0.85625 0.92107 0.92358 0.85950 0.89234 0.87708 0.87788 0.89405 0.95754 0.93079 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.92 9.89 71.24 0.70 -2.22 16 2 C 0.09 3.71 6.92 41.38 0.29 3.99 16 3 C -0.30 -12.51 9.52 22.11 0.21 -12.30 16 4 C 0.27 11.07 8.11 133.32 1.08 12.15 16 5 N -0.63 -18.40 5.45 -307.50 -1.68 -20.08 16 6 C 0.51 13.48 7.80 87.66 0.68 14.16 16 7 O -0.55 -18.85 13.11 -3.06 -0.04 -18.89 16 8 C -0.12 -1.72 5.66 29.85 0.17 -1.55 16 9 C -0.07 -1.18 4.79 30.59 0.15 -1.03 16 10 C -0.15 -1.87 5.73 -10.80 -0.06 -1.93 16 11 C -0.18 -2.15 10.18 30.62 0.31 -1.84 16 12 C -0.19 -2.32 10.25 30.62 0.31 -2.01 16 13 N -0.36 -17.06 12.59 -54.44 -0.69 -17.75 16 14 N -0.34 -16.95 3.59 -338.43 -1.22 -18.17 16 15 C 0.28 14.75 5.81 85.63 0.50 15.25 16 16 C -0.55 -31.33 9.39 25.60 0.24 -31.09 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 18 C 0.02 1.25 5.46 84.66 0.46 1.71 16 19 N -0.92 -52.03 13.29 21.45 0.28 -51.74 16 20 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 26 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 27 H 0.17 6.63 5.92 -2.91 -0.02 6.61 16 28 H 0.43 9.55 8.82 -92.71 -0.82 8.73 16 29 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 32 H 0.06 1.13 7.83 -2.39 -0.02 1.11 16 33 H 0.12 1.10 8.08 -2.38 -0.02 1.08 16 34 H 0.09 1.15 8.03 -2.38 -0.02 1.13 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 2.71 7.65 -2.39 -0.02 2.69 16 40 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -71.00 341.79 3.96 -67.04 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.22 Total: 21.05 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.04 Total: -6.69 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -3.29 Total: -107.73 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.04 Total: -18.89 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.00 3.96 -67.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271133968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.038 kcal (2) G-P(sol) polarization free energy of solvation -71.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds