Wall clock time and date at job start Mon Mar 30 2020 02:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38112 * 126.29665 * 2 1 4 4 C 1.47356 * 126.41922 * 0.02562 * 3 2 1 5 5 O 1.21624 * 120.00351 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99553 * 179.97438 * 4 3 2 7 7 C 1.36985 * 119.99972 * 180.02562 * 6 4 3 8 8 H 1.08005 * 119.99896 * 0.02562 * 7 6 4 9 9 C 1.38981 * 120.00201 * 179.72586 * 7 6 4 10 10 N 1.31404 * 120.00015 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99841 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99796 * 11 9 7 13 13 H 1.48499 * 109.47039 * 209.99956 * 11 9 7 14 14 H 1.48502 * 109.46906 * 329.99863 * 11 9 7 15 15 C 1.41318 * 107.15330 * 180.28639 * 3 2 1 16 16 N 1.30440 * 108.03163 * 359.55168 * 15 3 2 17 17 N 1.34278 * 126.29946 * 180.02562 * 2 1 3 18 18 C 1.46504 * 125.75307 * 359.95088 * 17 2 1 19 19 C 1.52994 * 109.47650 * 240.00581 * 18 17 2 20 20 C 1.52997 * 109.47351 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46883 * 59.99840 * 20 19 18 22 22 C 1.52996 * 109.47161 * 299.99841 * 21 20 19 23 23 C 1.52997 * 109.47092 * 60.00287 * 22 21 20 24 24 H 1.09000 * 109.47456 * 89.97366 * 1 2 3 25 25 H 1.08998 * 109.47449 * 209.97967 * 1 2 3 26 26 H 1.09004 * 109.47443 * 329.97671 * 1 2 3 27 27 H 0.97005 * 120.00189 * 0.02562 * 6 4 3 28 28 H 0.97000 * 120.00352 * 180.02562 * 10 9 7 29 29 H 1.08002 * 125.98095 * 179.71377 * 15 3 2 30 30 H 1.09004 * 109.46911 * 0.02562 * 18 17 2 31 31 H 1.09004 * 109.47081 * 300.00040 * 19 18 17 32 32 H 1.09004 * 109.47270 * 59.99574 * 19 18 17 33 33 H 1.09004 * 109.47058 * 300.00052 * 20 19 18 34 34 H 1.09001 * 109.46975 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.46726 * 180.02562 * 21 20 19 36 36 H 1.08994 * 109.47180 * 60.00372 * 21 20 19 37 37 H 1.09004 * 109.47437 * 300.00191 * 22 21 20 38 38 H 1.09004 * 109.47174 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.47338 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.47058 * 59.99672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1131 0.0000 4 6 1.8868 2.5201 0.0005 5 8 0.7004 2.7879 0.0015 6 7 2.8011 3.5103 0.0010 7 6 2.3942 4.8183 0.0020 8 1 1.3407 5.0561 0.0029 9 6 3.3370 5.8394 0.0082 10 7 2.9467 7.0941 0.0097 11 14 5.1592 5.4281 0.0145 12 1 5.6475 5.3225 -1.3839 13 1 5.9062 6.5002 0.7201 14 1 5.3722 4.1347 0.7123 15 6 3.6596 0.6497 -0.0067 16 7 3.6343 -0.6544 -0.0008 17 7 2.3019 -1.0822 -0.0005 18 6 1.8505 -2.4759 -0.0001 19 6 2.3801 -3.1834 1.2488 20 6 1.9092 -4.6390 1.2488 21 6 2.4379 -5.3461 -0.0007 22 6 1.9082 -4.6387 -1.2496 23 6 2.3792 -3.1830 -1.2496 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8901 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 3.7474 3.2968 0.0006 28 1 3.6047 7.8068 0.0137 29 1 4.5456 1.2673 -0.0129 30 1 0.7608 -2.5049 0.0002 31 1 3.4698 -3.1544 1.2482 32 1 2.0039 -2.6793 2.1391 33 1 0.8195 -4.6684 1.2492 34 1 2.2869 -5.1431 2.1384 35 1 2.1020 -6.3831 -0.0009 36 1 3.5275 -5.3168 -0.0011 37 1 0.8186 -4.6681 -1.2492 38 1 2.2845 -5.1427 -2.1399 39 1 2.0021 -2.6792 -2.1396 40 1 3.4688 -3.1537 -1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272971486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:01 Heat of formation + Delta-G solvation = 16.576585 kcal Electronic energy + Delta-G solvation = -21522.501217 eV Core-core repulsion = 18337.894442 eV Total energy + Delta-G solvation = -3184.606776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19013 -38.63840 -37.69135 -34.00032 -33.22426 -31.65828 -31.55688 -31.13718 -28.88973 -27.09539 -24.77582 -23.21562 -22.94784 -21.75908 -20.36861 -19.43488 -19.02637 -18.04322 -16.87162 -15.58352 -15.23093 -15.18175 -14.88273 -14.56555 -14.40142 -13.80062 -13.58257 -13.32606 -13.15493 -12.87355 -12.75879 -12.57776 -12.57189 -12.28714 -12.10734 -11.88363 -11.50420 -11.47897 -11.17599 -10.95117 -10.78778 -10.58023 -10.56289 -10.34973 -9.93131 -9.53911 -9.06155 -8.47713 -8.17458 -8.04676 -6.27920 -3.75074 1.96972 2.53570 2.68834 3.09690 3.13322 3.19674 4.14772 4.19566 4.36240 4.40738 4.50057 4.63074 4.84211 4.85953 4.86151 4.99318 5.09888 5.14536 5.18192 5.26389 5.30138 5.37927 5.47638 5.67009 5.68194 5.70840 5.80860 5.83895 5.84633 5.87770 5.95370 5.98884 6.14814 6.27136 6.51534 6.82940 7.22488 7.63522 7.91763 8.21956 8.66990 9.00025 9.49083 9.93623 10.85067 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034417 B = 0.003968 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.358633 B = 7054.645635 C = 7521.917369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.261 4.261 4 C 0.526 3.474 5 O -0.584 6.584 6 N -0.581 5.581 7 C -0.299 4.299 8 H 0.121 0.879 9 C 0.041 3.959 10 N -0.880 5.880 11 Si 0.876 3.124 12 H -0.270 1.270 13 H -0.276 1.276 14 H -0.268 1.268 15 C 0.067 3.933 16 N -0.303 5.303 17 N -0.363 5.363 18 C 0.164 3.836 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.126 4.126 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.370 0.630 28 H 0.273 0.727 29 H 0.182 0.818 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -24.342 -0.025 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.001 3.999 3 C -0.275 4.275 4 C 0.314 3.686 5 O -0.469 6.469 6 N -0.218 5.218 7 C -0.428 4.428 8 H 0.139 0.861 9 C -0.162 4.162 10 N -0.520 5.520 11 Si 0.703 3.297 12 H -0.195 1.195 13 H -0.201 1.201 14 H -0.193 1.193 15 C -0.120 4.120 16 N -0.122 5.122 17 N -0.145 5.145 18 C 0.062 3.938 19 C -0.165 4.165 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.203 0.797 28 H 0.084 0.916 29 H 0.199 0.801 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.242 -25.090 -0.019 25.091 hybrid contribution 1.208 0.725 0.004 1.408 sum 1.449 -24.365 -0.014 24.408 Atomic orbital electron populations 1.20592 0.86647 1.04195 1.03595 1.21388 0.94662 0.86158 0.97682 1.20408 0.92146 0.94837 1.20145 1.16681 0.85941 0.82696 0.83296 1.90577 1.16366 1.83701 1.56258 1.42004 1.06957 1.06456 1.66408 1.19459 0.96957 0.78971 1.47387 0.86111 1.25039 0.98499 0.94983 0.97712 1.69616 1.34617 0.98544 1.49250 0.86706 0.85300 0.78709 0.79017 1.19488 1.20133 1.19304 1.23981 0.97608 0.91937 0.98521 1.76962 0.96501 1.13081 1.25700 1.48466 1.03935 1.05281 1.56774 1.21323 0.99140 0.76494 0.96823 1.21874 1.02640 0.95371 0.96632 1.21515 1.00967 0.94565 0.98349 1.21588 1.01103 0.98996 0.94346 1.21515 1.00974 0.94565 0.98349 1.21867 1.02622 0.95358 0.96608 0.90219 0.92198 0.87231 0.79690 0.91614 0.80145 0.88216 0.90343 0.91371 0.91677 0.91302 0.91714 0.91656 0.91675 0.91302 0.91368 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.40 36.01 0.34 -1.00 16 2 C 0.13 2.25 7.01 -81.57 -0.57 1.68 16 3 C -0.26 -5.21 6.13 -105.06 -0.64 -5.85 16 4 C 0.53 12.79 7.76 -12.55 -0.10 12.69 16 5 O -0.58 -15.84 14.41 5.26 0.08 -15.76 16 6 N -0.58 -14.50 5.08 -11.97 -0.06 -14.56 16 7 C -0.30 -8.59 10.16 -14.97 -0.15 -8.74 16 8 H 0.12 3.92 7.38 -52.48 -0.39 3.53 16 9 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 10 N -0.88 -25.89 13.96 55.50 0.77 -25.12 16 11 Si 0.88 19.71 27.73 -169.99 -4.71 14.99 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 15 C 0.07 1.17 11.50 -16.97 -0.20 0.98 16 16 N -0.30 -5.03 12.33 30.87 0.38 -4.64 16 17 N -0.36 -5.43 3.25 -50.14 -0.16 -5.60 16 18 C 0.16 1.78 2.89 -67.93 -0.20 1.58 16 19 C -0.13 -1.23 5.45 -26.74 -0.15 -1.38 16 20 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 21 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 22 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 23 C -0.13 -1.22 5.45 -26.73 -0.15 -1.37 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.66 7.07 -51.93 -0.37 0.29 16 26 H 0.11 1.89 6.50 -51.93 -0.34 1.55 16 27 H 0.37 8.21 4.71 -40.82 -0.19 8.02 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.18 2.78 7.50 -52.49 -0.39 2.38 16 30 H 0.10 0.93 6.63 -51.93 -0.34 0.59 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -32.97 324.21 -7.04 -40.02 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.84 Total: 9.07 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.38 Total: -3.29 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.93 Total: -49.92 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.08 Total: -15.76 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 14.99 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.97 -7.04 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272971486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.595 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds