Wall clock time and date at job start Mon Mar 30 2020 02:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38112 * 126.29665 * 2 1 4 4 C 1.47356 * 126.41922 * 0.02562 * 3 2 1 5 5 O 1.21624 * 120.00351 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99553 * 179.97438 * 4 3 2 7 7 C 1.36985 * 119.99972 * 180.02562 * 6 4 3 8 8 H 1.08005 * 119.99896 * 0.02562 * 7 6 4 9 9 C 1.38981 * 120.00201 * 179.72586 * 7 6 4 10 10 N 1.31404 * 120.00015 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99841 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99796 * 11 9 7 13 13 H 1.48499 * 109.47039 * 209.99956 * 11 9 7 14 14 H 1.48502 * 109.46906 * 329.99863 * 11 9 7 15 15 C 1.41318 * 107.15330 * 180.28639 * 3 2 1 16 16 N 1.30440 * 108.03163 * 359.55168 * 15 3 2 17 17 N 1.34278 * 126.29946 * 180.02562 * 2 1 3 18 18 C 1.46504 * 125.75307 * 359.95088 * 17 2 1 19 19 C 1.52994 * 109.47650 * 240.00581 * 18 17 2 20 20 C 1.52997 * 109.47351 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.46883 * 59.99840 * 20 19 18 22 22 C 1.52996 * 109.47161 * 299.99841 * 21 20 19 23 23 C 1.52997 * 109.47092 * 60.00287 * 22 21 20 24 24 H 1.09000 * 109.47456 * 89.97366 * 1 2 3 25 25 H 1.08998 * 109.47449 * 209.97967 * 1 2 3 26 26 H 1.09004 * 109.47443 * 329.97671 * 1 2 3 27 27 H 0.97005 * 120.00189 * 0.02562 * 6 4 3 28 28 H 0.97000 * 120.00352 * 180.02562 * 10 9 7 29 29 H 1.08002 * 125.98095 * 179.71377 * 15 3 2 30 30 H 1.09004 * 109.46911 * 0.02562 * 18 17 2 31 31 H 1.09004 * 109.47081 * 300.00040 * 19 18 17 32 32 H 1.09004 * 109.47270 * 59.99574 * 19 18 17 33 33 H 1.09004 * 109.47058 * 300.00052 * 20 19 18 34 34 H 1.09001 * 109.46975 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.46726 * 180.02562 * 21 20 19 36 36 H 1.08994 * 109.47180 * 60.00372 * 21 20 19 37 37 H 1.09004 * 109.47437 * 300.00191 * 22 21 20 38 38 H 1.09004 * 109.47174 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.47338 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.47058 * 59.99672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1131 0.0000 4 6 1.8868 2.5201 0.0005 5 8 0.7004 2.7879 0.0015 6 7 2.8011 3.5103 0.0010 7 6 2.3942 4.8183 0.0020 8 1 1.3407 5.0561 0.0029 9 6 3.3370 5.8394 0.0082 10 7 2.9467 7.0941 0.0097 11 14 5.1592 5.4281 0.0145 12 1 5.6475 5.3225 -1.3839 13 1 5.9062 6.5002 0.7201 14 1 5.3722 4.1347 0.7123 15 6 3.6596 0.6497 -0.0067 16 7 3.6343 -0.6544 -0.0008 17 7 2.3019 -1.0822 -0.0005 18 6 1.8505 -2.4759 -0.0001 19 6 2.3801 -3.1834 1.2488 20 6 1.9092 -4.6390 1.2488 21 6 2.4379 -5.3461 -0.0007 22 6 1.9082 -4.6387 -1.2496 23 6 2.3792 -3.1830 -1.2496 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8901 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 3.7474 3.2968 0.0006 28 1 3.6047 7.8068 0.0137 29 1 4.5456 1.2673 -0.0129 30 1 0.7608 -2.5049 0.0002 31 1 3.4698 -3.1544 1.2482 32 1 2.0039 -2.6793 2.1391 33 1 0.8195 -4.6684 1.2492 34 1 2.2869 -5.1431 2.1384 35 1 2.1020 -6.3831 -0.0009 36 1 3.5275 -5.3168 -0.0011 37 1 0.8186 -4.6681 -1.2492 38 1 2.2845 -5.1427 -2.1399 39 1 2.0021 -2.6792 -2.1396 40 1 3.4688 -3.1537 -1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272971486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:01 Heat of formation + Delta-G solvation = -5.267312 kcal Electronic energy + Delta-G solvation = -21523.448440 eV Core-core repulsion = 18337.894442 eV Total energy + Delta-G solvation = -3185.553998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.50201 -39.95376 -39.08008 -36.03956 -34.38765 -33.61594 -32.88875 -31.79183 -30.02735 -28.47149 -26.66251 -24.19551 -23.60153 -23.29104 -21.37565 -21.04573 -20.32103 -19.78251 -18.30207 -16.92060 -16.66490 -16.47634 -16.32904 -15.50077 -15.30264 -15.28756 -14.93300 -14.80073 -14.66922 -14.27700 -13.94882 -13.85400 -13.74814 -13.32787 -13.20657 -13.16521 -12.97840 -12.41915 -12.32634 -12.12182 -11.98559 -11.80448 -11.53011 -11.52192 -11.32362 -11.28501 -10.44521 -10.26283 -10.24197 -9.54592 -8.40726 -5.97963 0.58553 1.19115 1.30941 1.37316 1.41146 1.44184 2.23447 2.52835 2.99395 3.28220 3.38308 3.62915 3.65976 3.77563 3.93653 4.07054 4.17093 4.19659 4.20077 4.36565 4.45544 4.51014 4.57239 4.58740 4.65589 4.85873 4.91964 5.03720 5.06943 5.16060 5.18132 5.20893 5.28321 5.33366 5.41753 5.51556 5.60756 5.97211 6.01219 6.54444 6.63972 6.88309 7.41664 7.97459 8.76585 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034417 B = 0.003968 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.358633 B = 7054.645635 C = 7521.917369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.144 3.856 3 C -0.303 4.303 4 C 0.530 3.470 5 O -0.622 6.622 6 N -0.583 5.583 7 C -0.324 4.324 8 H 0.062 0.938 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 0.955 3.045 12 H -0.255 1.255 13 H -0.271 1.271 14 H -0.235 1.235 15 C 0.069 3.931 16 N -0.305 5.305 17 N -0.350 5.350 18 C 0.151 3.849 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.122 4.122 22 C -0.110 4.110 23 C -0.122 4.122 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.386 0.614 28 H 0.280 0.720 29 H 0.201 0.799 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -28.075 -0.021 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.011 3.989 3 C -0.318 4.318 4 C 0.320 3.680 5 O -0.509 6.509 6 N -0.223 5.223 7 C -0.453 4.453 8 H 0.080 0.920 9 C -0.211 4.211 10 N -0.571 5.571 11 Si 0.775 3.225 12 H -0.180 1.180 13 H -0.196 1.196 14 H -0.158 1.158 15 C -0.118 4.118 16 N -0.124 5.124 17 N -0.130 5.130 18 C 0.051 3.949 19 C -0.161 4.161 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.148 4.148 23 C -0.160 4.160 24 H 0.110 0.890 25 H 0.120 0.880 26 H 0.097 0.903 27 H 0.222 0.778 28 H 0.089 0.911 29 H 0.218 0.782 30 H 0.141 0.859 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.662 -28.884 -0.012 28.932 hybrid contribution 0.604 1.750 -0.002 1.852 sum 2.265 -27.133 -0.014 27.228 Atomic orbital electron populations 1.20636 0.84994 1.04760 1.04503 1.21712 0.95763 0.86122 0.95351 1.20105 0.94163 0.92888 1.24618 1.17385 0.85329 0.84362 0.80967 1.90548 1.18137 1.84840 1.57362 1.41778 1.07894 1.05083 1.67510 1.19043 0.94875 0.81437 1.49945 0.91994 1.26031 1.04707 0.94167 0.96179 1.69780 1.37109 1.00044 1.50185 0.85493 0.76809 0.80047 0.80115 1.17951 1.19585 1.15808 1.24239 0.97283 0.92322 0.97928 1.76956 0.97504 1.12472 1.25497 1.48859 1.03111 1.06388 1.54620 1.21866 1.00587 0.74297 0.98123 1.21841 1.01559 0.97139 0.95515 1.21512 1.01864 0.92421 0.99032 1.21594 1.00675 0.99885 0.93756 1.21512 1.01860 0.92427 0.99036 1.21832 1.01539 0.97122 0.95492 0.89025 0.87963 0.90279 0.77846 0.91069 0.78208 0.85943 0.91988 0.92121 0.90202 0.90453 0.89901 0.92439 0.90217 0.90452 0.92128 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.51 9.40 71.24 0.67 -1.84 16 2 C 0.14 4.72 7.01 42.15 0.30 5.02 16 3 C -0.30 -12.00 6.13 -20.15 -0.12 -12.12 16 4 C 0.53 26.54 7.76 86.64 0.67 27.21 16 5 O -0.62 -35.50 14.41 -4.11 -0.06 -35.56 16 6 N -0.58 -29.73 5.08 -310.02 -1.57 -31.31 16 7 C -0.32 -19.58 10.16 84.07 0.85 -18.72 16 8 H 0.06 4.37 7.38 -2.91 -0.02 4.35 16 9 C -0.01 -0.68 5.50 84.94 0.47 -0.21 16 10 N -0.93 -56.83 13.96 21.67 0.30 -56.53 16 11 Si 0.96 40.18 27.73 68.60 1.90 42.08 16 12 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.23 -8.53 6.52 99.48 0.65 -7.88 16 15 C 0.07 2.34 11.50 85.66 0.99 3.32 16 16 N -0.30 -9.56 12.33 -56.26 -0.69 -10.25 16 17 N -0.35 -9.73 3.25 -312.55 -1.02 -10.75 16 18 C 0.15 2.83 2.89 44.99 0.13 2.96 16 19 C -0.12 -2.05 5.45 30.59 0.17 -1.88 16 20 C -0.11 -1.15 5.92 30.59 0.18 -0.97 16 21 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 22 C -0.11 -1.15 5.92 30.59 0.18 -0.97 16 23 C -0.12 -2.04 5.45 30.59 0.17 -1.87 16 24 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.10 1.91 7.07 -2.39 -0.02 1.89 16 26 H 0.08 2.76 6.50 -2.39 -0.02 2.74 16 27 H 0.39 16.79 4.71 -92.70 -0.44 16.36 16 28 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.20 5.68 7.50 -2.91 -0.02 5.66 16 30 H 0.12 1.78 6.63 -2.39 -0.02 1.76 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -77.04 324.21 4.24 -72.80 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.55 Total: 30.59 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.83 Total: -1.06 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -2.98 Total: -108.84 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.06 Total: -35.56 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.90 Total: 42.08 kcal Total: -77.04 4.24 -72.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272971486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.528 kcal (2) G-P(sol) polarization free energy of solvation -77.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds