Wall clock time and date at job start Mon Mar 30 2020 02:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.30830 * 125.89815 * 2 1 4 4 N 1.40082 * 108.20613 * 179.97438 * 3 2 1 5 5 H 0.96996 * 126.04076 * 180.02562 * 4 3 2 6 6 C 1.34955 * 107.92156 * 359.75139 * 4 3 2 7 7 C 1.50701 * 126.12571 * 180.24152 * 6 4 3 8 8 C 1.35307 * 107.74415 * 0.39610 * 6 4 3 9 9 C 1.50701 * 126.03530 * 179.87152 * 8 6 4 10 10 H 1.08997 * 109.47875 * 359.71494 * 9 8 6 11 11 C 1.53007 * 109.47211 * 119.71639 * 9 8 6 12 12 C 1.50708 * 109.47124 * 239.71031 * 9 8 6 13 13 O 1.21289 * 119.99555 * 0.02562 * 12 9 8 14 14 N 1.34769 * 120.00013 * 180.02562 * 12 9 8 15 15 C 1.37098 * 120.00079 * 180.02562 * 14 12 9 16 16 H 1.08001 * 119.99613 * 224.18286 * 15 14 12 17 17 C 1.38946 * 120.00178 * 44.17676 * 15 14 12 18 18 N 1.31408 * 119.99930 * 18.06228 * 17 15 14 19 19 Si 1.86799 * 120.00079 * 198.05970 * 17 15 14 20 20 H 1.48498 * 109.47025 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47119 * 300.00134 * 19 17 15 22 22 H 1.48508 * 109.47088 * 60.00150 * 19 17 15 23 23 C 1.46505 * 120.00163 * 359.97438 * 14 12 9 24 24 C 1.53002 * 117.50113 * 189.27442 * 23 14 12 25 25 C 1.53006 * 117.49500 * 120.61969 * 23 14 12 26 26 H 1.09002 * 109.46815 * 270.02882 * 1 2 3 27 27 H 1.09001 * 109.46661 * 30.02641 * 1 2 3 28 28 H 1.08991 * 109.47127 * 150.02448 * 1 2 3 29 29 H 1.09008 * 109.47193 * 270.18376 * 7 6 4 30 30 H 1.09003 * 109.47395 * 30.17990 * 7 6 4 31 31 H 1.09000 * 109.47060 * 150.18177 * 7 6 4 32 32 H 1.08997 * 109.47112 * 180.02562 * 11 9 8 33 33 H 1.09001 * 109.46470 * 299.99641 * 11 9 8 34 34 H 1.08993 * 109.47285 * 59.99270 * 11 9 8 35 35 H 0.97003 * 119.99896 * 174.90768 * 18 17 15 36 36 H 1.08999 * 115.54910 * 334.95051 * 23 14 12 37 37 H 1.09005 * 117.49938 * 0.02562 * 24 23 14 38 38 H 1.08998 * 117.49842 * 145.01657 * 24 23 14 39 39 H 1.09003 * 117.49774 * 214.98092 * 25 23 14 40 40 H 1.08997 * 117.50034 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 1 4.3908 1.2079 0.0011 6 6 3.6142 -0.7154 0.0065 7 6 4.8350 -1.5990 0.0144 8 6 2.3272 -1.1330 0.0007 9 6 1.8600 -2.5658 0.0014 10 1 2.7243 -3.2299 0.0023 11 6 1.0154 -2.8262 1.2504 12 6 1.0294 -2.8239 -1.2293 13 8 0.8363 -1.9323 -2.0286 14 7 0.5012 -4.0455 -1.4417 15 6 -0.2540 -4.2805 -2.5616 16 1 -1.1786 -4.8331 -2.4831 17 6 0.1701 -3.8077 -3.7974 18 7 1.4249 -3.4585 -3.9719 19 14 -1.0434 -3.6684 -5.2107 20 1 -0.3462 -3.1422 -6.4116 21 1 -1.6066 -5.0087 -5.5134 22 1 -2.1419 -2.7441 -4.8307 23 6 0.7349 -5.1226 -0.4766 24 6 0.2982 -6.5342 -0.8737 25 6 -0.4906 -5.7577 0.1836 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8901 -0.5134 29 1 5.1346 -1.8139 -1.0115 30 1 5.6486 -1.0901 0.5314 31 1 4.6049 -2.5321 0.5287 32 1 0.6779 -3.8626 1.2512 33 1 1.6162 -2.6395 2.1406 34 1 0.1511 -2.1621 1.2496 35 1 1.7381 -3.1989 -4.8525 36 1 1.6380 -5.0260 0.1261 37 1 -0.1627 -6.6615 -1.8533 38 1 0.9138 -7.3662 -0.5321 39 1 -0.3936 -6.0793 1.2206 40 1 -1.4706 -5.3739 -0.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273138117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:44 Heat of formation + Delta-G solvation = 74.340843 kcal Electronic energy + Delta-G solvation = -22901.080522 eV Core-core repulsion = 19718.978593 eV Total energy + Delta-G solvation = -3182.101930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93266 -38.62369 -36.03631 -33.71385 -32.85617 -32.47483 -30.83697 -29.66932 -27.49392 -26.37789 -25.06040 -23.26884 -21.66321 -20.97484 -20.00128 -19.56021 -18.31702 -16.97611 -16.03216 -15.81953 -14.81350 -14.70261 -14.19322 -14.04567 -13.67940 -13.18514 -13.09080 -12.90087 -12.60424 -12.52993 -12.13235 -11.95855 -11.91399 -11.67934 -11.25850 -11.21414 -10.94382 -10.82585 -10.77118 -10.75117 -10.41254 -10.14551 -9.83227 -9.73397 -9.60240 -8.67541 -8.62900 -7.93460 -7.67555 -6.89130 -6.03645 -3.78590 2.34559 3.29558 3.32449 3.35180 3.41239 3.44668 4.24433 4.34099 4.85258 4.94795 5.05959 5.20968 5.28472 5.37608 5.60681 5.65292 5.69095 5.73447 5.83506 5.89650 5.94570 5.99443 6.06802 6.16412 6.18744 6.26702 6.28504 6.36869 6.51769 6.64520 6.66088 6.73157 6.83121 6.87029 7.00974 7.28114 7.68744 7.76493 8.23840 8.36247 9.16378 9.28546 9.76576 10.43265 11.05098 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.007564 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.870943 B = 3701.032909 C = 4412.738147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.117 3.883 3 N -0.313 5.313 4 N -0.487 5.487 5 H 0.430 0.570 6 C 0.076 3.924 7 C -0.088 4.088 8 C -0.186 4.186 9 C -0.032 4.032 10 H 0.079 0.921 11 C -0.149 4.149 12 C 0.493 3.507 13 O -0.518 6.518 14 N -0.430 5.430 15 C -0.348 4.348 16 H 0.075 0.925 17 C 0.075 3.925 18 N -0.833 5.833 19 Si 0.909 3.091 20 H -0.288 1.288 21 H -0.279 1.279 22 H -0.274 1.274 23 C 0.080 3.920 24 C -0.180 4.180 25 C -0.209 4.209 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.262 0.738 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 -0.383 10.502 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 N -0.137 5.137 4 N -0.195 5.195 5 H 0.273 0.727 6 C -0.051 4.051 7 C -0.147 4.147 8 C -0.197 4.197 9 C -0.055 4.055 10 H 0.097 0.903 11 C -0.206 4.206 12 C 0.280 3.720 13 O -0.394 6.394 14 N -0.151 5.151 15 C -0.475 4.475 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.466 5.466 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.205 1.205 22 H -0.200 1.200 23 C -0.026 4.026 24 C -0.218 4.218 25 C -0.248 4.248 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.162 1.513 9.924 10.867 hybrid contribution 0.115 -0.600 -0.871 1.064 sum 4.276 0.913 9.053 10.054 Atomic orbital electron populations 1.20339 0.87160 1.04619 1.01386 1.21993 0.96723 0.89823 0.96414 1.77161 0.86383 1.22556 1.27551 1.45918 1.07096 1.04512 1.61944 0.72701 1.20703 0.96764 0.84933 1.02703 1.20405 0.92693 0.98190 1.03413 1.19225 0.90795 0.95399 1.14295 1.19553 0.98481 0.91676 0.95783 0.90317 1.22030 0.99831 1.02968 0.95770 1.19642 0.83213 0.82719 0.86411 1.90530 1.59584 1.43259 1.46069 1.42754 1.48053 1.05229 1.19105 1.18753 1.03328 1.40844 0.84541 0.90773 1.25191 0.95032 0.95241 0.98042 1.69814 1.14285 1.39747 1.22755 0.86336 0.81135 0.78129 0.80747 1.21390 1.20514 1.19983 1.21715 0.95675 0.89172 0.96076 1.23123 1.03886 0.94402 1.00380 1.23327 0.98295 1.06532 0.96632 0.91737 0.91769 0.88547 0.90190 0.91731 0.89829 0.90855 0.93290 0.92299 0.92761 0.87823 0.87565 0.90051 0.89920 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 8.57 36.01 0.31 -1.12 16 2 C 0.12 2.37 6.53 -82.41 -0.54 1.83 16 3 N -0.31 -6.14 12.70 33.67 0.43 -5.71 16 4 N -0.49 -7.98 7.36 33.48 0.25 -7.74 16 5 H 0.43 5.33 8.96 -182.61 -1.64 3.70 16 6 C 0.08 1.30 7.21 -82.26 -0.59 0.70 16 7 C -0.09 -1.13 10.06 36.01 0.36 -0.76 16 8 C -0.19 -3.64 4.36 -105.06 -0.46 -4.10 16 9 C -0.03 -0.61 2.09 -92.92 -0.19 -0.81 16 10 H 0.08 1.43 6.23 -51.93 -0.32 1.11 16 11 C -0.15 -2.39 8.67 37.16 0.32 -2.06 16 12 C 0.49 12.06 5.40 -10.99 -0.06 12.00 16 13 O -0.52 -14.79 11.61 5.55 0.06 -14.73 16 14 N -0.43 -10.39 2.85 -107.72 -0.31 -10.70 16 15 C -0.35 -9.31 7.72 -14.93 -0.12 -9.42 16 16 H 0.07 1.93 7.53 -52.49 -0.40 1.54 16 17 C 0.08 2.11 4.39 -17.47 -0.08 2.03 16 18 N -0.83 -24.60 11.72 55.50 0.65 -23.95 16 19 Si 0.91 22.06 29.59 -169.99 -5.03 17.03 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.08 1.54 4.32 -67.92 -0.29 1.25 16 24 C -0.18 -3.19 9.82 -26.69 -0.26 -3.45 16 25 C -0.21 -3.44 9.48 -26.69 -0.25 -3.69 16 26 H 0.06 1.01 7.92 -51.93 -0.41 0.60 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.10 2.06 5.30 -51.93 -0.28 1.78 16 29 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.99 7.15 -51.93 -0.37 0.61 16 32 H 0.07 1.12 4.43 -51.93 -0.23 0.89 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.97 6.15 -51.93 -0.32 0.65 16 35 H 0.26 7.53 8.32 -40.82 -0.34 7.19 16 36 H 0.10 1.78 6.13 -51.93 -0.32 1.46 16 37 H 0.11 2.12 6.91 -51.93 -0.36 1.76 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -34.09 317.80 -7.74 -41.84 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.73 Total: 6.78 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.85 Total: -7.62 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 1.02 Total: -48.09 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.06 Total: -14.73 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.09 -7.74 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273138117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.179 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds