Wall clock time and date at job start Mon Mar 30 2020 02:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.30830 * 125.89815 * 2 1 4 4 N 1.40082 * 108.20613 * 179.97438 * 3 2 1 5 5 H 0.96996 * 126.04076 * 180.02562 * 4 3 2 6 6 C 1.34955 * 107.92156 * 359.75139 * 4 3 2 7 7 C 1.50701 * 126.12571 * 180.24152 * 6 4 3 8 8 C 1.35307 * 107.74415 * 0.39610 * 6 4 3 9 9 C 1.50701 * 126.03530 * 179.87152 * 8 6 4 10 10 H 1.08997 * 109.47875 * 359.71494 * 9 8 6 11 11 C 1.53007 * 109.47211 * 119.71639 * 9 8 6 12 12 C 1.50708 * 109.47124 * 239.71031 * 9 8 6 13 13 O 1.21289 * 119.99555 * 0.02562 * 12 9 8 14 14 N 1.34769 * 120.00013 * 180.02562 * 12 9 8 15 15 C 1.37098 * 120.00079 * 180.02562 * 14 12 9 16 16 H 1.08001 * 119.99613 * 224.18286 * 15 14 12 17 17 C 1.38946 * 120.00178 * 44.17676 * 15 14 12 18 18 N 1.31408 * 119.99930 * 18.06228 * 17 15 14 19 19 Si 1.86799 * 120.00079 * 198.05970 * 17 15 14 20 20 H 1.48498 * 109.47025 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47119 * 300.00134 * 19 17 15 22 22 H 1.48508 * 109.47088 * 60.00150 * 19 17 15 23 23 C 1.46505 * 120.00163 * 359.97438 * 14 12 9 24 24 C 1.53002 * 117.50113 * 189.27442 * 23 14 12 25 25 C 1.53006 * 117.49500 * 120.61969 * 23 14 12 26 26 H 1.09002 * 109.46815 * 270.02882 * 1 2 3 27 27 H 1.09001 * 109.46661 * 30.02641 * 1 2 3 28 28 H 1.08991 * 109.47127 * 150.02448 * 1 2 3 29 29 H 1.09008 * 109.47193 * 270.18376 * 7 6 4 30 30 H 1.09003 * 109.47395 * 30.17990 * 7 6 4 31 31 H 1.09000 * 109.47060 * 150.18177 * 7 6 4 32 32 H 1.08997 * 109.47112 * 180.02562 * 11 9 8 33 33 H 1.09001 * 109.46470 * 299.99641 * 11 9 8 34 34 H 1.08993 * 109.47285 * 59.99270 * 11 9 8 35 35 H 0.97003 * 119.99896 * 174.90768 * 18 17 15 36 36 H 1.08999 * 115.54910 * 334.95051 * 23 14 12 37 37 H 1.09005 * 117.49938 * 0.02562 * 24 23 14 38 38 H 1.08998 * 117.49842 * 145.01657 * 24 23 14 39 39 H 1.09003 * 117.49774 * 214.98092 * 25 23 14 40 40 H 1.08997 * 117.50034 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 1 4.3908 1.2079 0.0011 6 6 3.6142 -0.7154 0.0065 7 6 4.8350 -1.5990 0.0144 8 6 2.3272 -1.1330 0.0007 9 6 1.8600 -2.5658 0.0014 10 1 2.7243 -3.2299 0.0023 11 6 1.0154 -2.8262 1.2504 12 6 1.0294 -2.8239 -1.2293 13 8 0.8363 -1.9323 -2.0286 14 7 0.5012 -4.0455 -1.4417 15 6 -0.2540 -4.2805 -2.5616 16 1 -1.1786 -4.8331 -2.4831 17 6 0.1701 -3.8077 -3.7974 18 7 1.4249 -3.4585 -3.9719 19 14 -1.0434 -3.6684 -5.2107 20 1 -0.3462 -3.1422 -6.4116 21 1 -1.6066 -5.0087 -5.5134 22 1 -2.1419 -2.7441 -4.8307 23 6 0.7349 -5.1226 -0.4766 24 6 0.2982 -6.5342 -0.8737 25 6 -0.4906 -5.7577 0.1836 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8901 -0.5134 29 1 5.1346 -1.8139 -1.0115 30 1 5.6486 -1.0901 0.5314 31 1 4.6049 -2.5321 0.5287 32 1 0.6779 -3.8626 1.2512 33 1 1.6162 -2.6395 2.1406 34 1 0.1511 -2.1621 1.2496 35 1 1.7381 -3.1989 -4.8525 36 1 1.6380 -5.0260 0.1261 37 1 -0.1627 -6.6615 -1.8533 38 1 0.9138 -7.3662 -0.5321 39 1 -0.3936 -6.0793 1.2206 40 1 -1.4706 -5.3739 -0.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273138117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:43 Heat of formation + Delta-G solvation = 51.596058 kcal Electronic energy + Delta-G solvation = -22902.066810 eV Core-core repulsion = 19718.978593 eV Total energy + Delta-G solvation = -3183.088218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.32478 -40.32135 -37.65840 -35.34087 -34.31110 -34.18257 -32.64160 -31.04683 -28.91160 -27.66203 -26.95017 -24.77909 -23.05168 -22.52446 -21.64915 -20.99975 -19.84951 -18.53104 -17.79970 -17.34685 -16.65775 -16.18357 -15.84194 -15.56681 -15.27280 -14.65913 -14.52301 -14.34616 -14.05270 -13.90766 -13.48151 -13.44024 -13.24828 -13.09607 -13.00158 -12.80200 -12.68977 -12.41166 -12.39069 -12.19695 -12.06464 -11.98346 -11.38595 -11.19504 -11.06900 -10.62410 -10.05835 -9.69979 -9.17492 -8.77613 -8.11605 -5.87471 0.98553 1.36341 1.45020 1.47317 1.84657 2.08276 2.35106 2.58049 3.19778 3.28681 3.49013 3.81425 3.85711 4.13119 4.22976 4.29277 4.37053 4.40269 4.49813 4.56044 4.63449 4.68885 4.75996 4.78015 4.90492 4.99482 5.01863 5.10537 5.18206 5.24688 5.30781 5.33669 5.41491 5.52835 5.56101 5.58767 5.84050 6.30088 6.56644 6.84699 7.15915 7.38578 7.86555 8.56731 8.96217 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.007564 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.870943 B = 3701.032909 C = 4412.738147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.096 3.904 3 N -0.339 5.339 4 N -0.474 5.474 5 H 0.447 0.553 6 C 0.087 3.913 7 C -0.087 4.087 8 C -0.223 4.223 9 C -0.018 4.018 10 H 0.092 0.908 11 C -0.141 4.141 12 C 0.483 3.517 13 O -0.571 6.571 14 N -0.447 5.447 15 C -0.349 4.349 16 H 0.073 0.927 17 C 0.026 3.974 18 N -0.870 5.870 19 Si 0.959 3.041 20 H -0.293 1.293 21 H -0.258 1.258 22 H -0.284 1.284 23 C 0.054 3.946 24 C -0.181 4.181 25 C -0.181 4.181 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.254 0.746 36 H 0.130 0.870 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.094 -1.606 12.824 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 N -0.164 5.164 4 N -0.184 5.184 5 H 0.293 0.707 6 C -0.042 4.042 7 C -0.145 4.145 8 C -0.234 4.234 9 C -0.041 4.041 10 H 0.110 0.890 11 C -0.198 4.198 12 C 0.272 3.728 13 O -0.450 6.450 14 N -0.168 5.168 15 C -0.476 4.476 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.505 5.505 19 Si 0.785 3.215 20 H -0.219 1.219 21 H -0.182 1.182 22 H -0.210 1.210 23 C -0.051 4.051 24 C -0.218 4.218 25 C -0.220 4.220 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.148 0.852 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.134 0.256 12.273 13.306 hybrid contribution -0.189 -0.226 -1.529 1.557 sum 4.946 0.031 10.744 11.828 Atomic orbital electron populations 1.20234 0.87133 1.02810 1.02617 1.22214 0.97257 0.90511 0.96980 1.77072 0.87746 1.22903 1.28670 1.45957 1.06832 1.04912 1.60694 0.70659 1.21310 0.97497 0.85313 1.00109 1.20564 0.91918 0.98330 1.03710 1.19454 0.91941 0.95391 1.16611 1.19426 0.98286 0.92010 0.94404 0.89042 1.21986 0.99384 1.03217 0.95186 1.20566 0.82874 0.82080 0.87316 1.90489 1.61453 1.44878 1.48225 1.42963 1.47821 1.06760 1.19254 1.18956 1.03585 1.39555 0.85544 0.90944 1.25890 0.96180 0.95506 1.00415 1.69927 1.15839 1.42210 1.22541 0.85540 0.79025 0.78707 0.78195 1.21916 1.18224 1.20965 1.22017 0.98257 0.88517 0.96329 1.23164 1.04352 0.94636 0.99675 1.23339 0.96086 1.04132 0.98426 0.88939 0.92197 0.91528 0.90827 0.87969 0.88512 0.89925 0.90443 0.93360 0.93673 0.85247 0.90573 0.86685 0.85672 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.66 8.57 71.24 0.61 -2.05 16 2 C 0.10 3.89 6.53 43.11 0.28 4.17 16 3 N -0.34 -13.20 12.70 -47.38 -0.60 -13.81 16 4 N -0.47 -14.84 7.36 -48.00 -0.35 -15.20 16 5 H 0.45 10.19 8.96 -213.34 -1.91 8.28 16 6 C 0.09 2.78 7.21 41.40 0.30 3.08 16 7 C -0.09 -1.94 10.06 71.24 0.72 -1.22 16 8 C -0.22 -8.54 4.36 -20.15 -0.09 -8.63 16 9 C -0.02 -0.69 2.09 -12.28 -0.03 -0.72 16 10 H 0.09 3.12 6.23 -2.39 -0.01 3.11 16 11 C -0.14 -4.17 8.67 71.98 0.62 -3.54 16 12 C 0.48 23.86 5.40 87.66 0.47 24.33 16 13 O -0.57 -33.76 11.61 -3.06 -0.04 -33.79 16 14 N -0.45 -21.64 2.85 -613.11 -1.75 -23.38 16 15 C -0.35 -19.01 7.72 84.04 0.65 -18.36 16 16 H 0.07 3.85 7.53 -2.91 -0.02 3.83 16 17 C 0.03 1.49 4.39 84.93 0.37 1.86 16 18 N -0.87 -53.09 11.72 21.66 0.25 -52.84 16 19 Si 0.96 46.55 29.59 68.60 2.03 48.58 16 20 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 23 C 0.05 1.96 4.32 44.99 0.19 2.16 16 24 C -0.18 -5.99 9.82 30.62 0.30 -5.68 16 25 C -0.18 -5.43 9.48 30.62 0.29 -5.14 16 26 H 0.09 2.87 7.92 -2.39 -0.02 2.86 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.07 2.96 5.30 -2.39 -0.01 2.95 16 29 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 1.92 7.15 -2.39 -0.02 1.91 16 32 H 0.08 2.26 4.43 -2.39 -0.01 2.25 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.52 6.15 -2.39 -0.01 1.51 16 35 H 0.25 15.21 8.32 -92.71 -0.77 14.44 16 36 H 0.13 4.00 6.13 -2.39 -0.01 3.99 16 37 H 0.08 3.00 6.91 -2.38 -0.02 2.99 16 38 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -77.63 317.80 3.41 -74.22 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.84 Total: 25.94 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.70 Total: -9.74 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -2.45 Total: -105.22 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.04 Total: -33.79 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.63 3.41 -74.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273138117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.820 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds