Wall clock time and date at job start Mon Mar 30 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30841 * 125.90156 * 2 1 4 4 N 1.40086 * 108.20440 * 180.25391 * 3 2 1 5 5 H 0.96999 * 126.03326 * 179.73603 * 4 3 2 6 6 C 1.34948 * 107.92596 * 359.71684 * 4 3 2 7 7 C 1.50697 * 126.12272 * 179.97438 * 6 4 3 8 8 C 1.35309 * 107.74551 * 359.97438 * 6 4 3 9 9 C 1.50702 * 126.03630 * 179.97438 * 8 6 4 10 10 H 1.08996 * 109.47230 * 2.59081 * 9 8 6 11 11 C 1.53001 * 109.47281 * 242.58664 * 9 8 6 12 12 C 1.50708 * 109.46970 * 122.58675 * 9 8 6 13 13 O 1.21295 * 119.99723 * 17.89721 * 12 9 8 14 14 N 1.34775 * 119.99886 * 197.61625 * 12 9 8 15 15 C 1.37104 * 119.99569 * 175.62420 * 14 12 9 16 16 H 1.08002 * 120.00079 * 330.18091 * 15 14 12 17 17 C 1.38945 * 119.99446 * 150.18028 * 15 14 12 18 18 N 1.31408 * 120.00637 * 349.54535 * 17 15 14 19 19 Si 1.86804 * 119.99788 * 169.54643 * 17 15 14 20 20 H 1.48501 * 109.46817 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47349 * 119.99631 * 19 17 15 22 22 H 1.48497 * 109.47329 * 239.99987 * 19 17 15 23 23 C 1.46496 * 120.00439 * 355.62721 * 14 12 9 24 24 C 1.52994 * 117.50162 * 133.23529 * 23 14 12 25 25 C 1.52999 * 117.49794 * 64.57254 * 23 14 12 26 26 H 1.09001 * 109.47546 * 272.92551 * 1 2 3 27 27 H 1.09002 * 109.47259 * 32.92812 * 1 2 3 28 28 H 1.09002 * 109.47175 * 152.92780 * 1 2 3 29 29 H 1.09002 * 109.47063 * 270.01851 * 7 6 4 30 30 H 1.09000 * 109.47367 * 30.02455 * 7 6 4 31 31 H 1.09002 * 109.47219 * 150.02213 * 7 6 4 32 32 H 1.08996 * 109.47373 * 64.75614 * 11 9 8 33 33 H 1.09005 * 109.47049 * 184.75801 * 11 9 8 34 34 H 1.08999 * 109.46910 * 304.75521 * 11 9 8 35 35 H 0.96998 * 120.00522 * 185.03629 * 18 17 15 36 36 H 1.08999 * 115.54926 * 278.91041 * 23 14 12 37 37 H 1.09007 * 117.49869 * 0.02562 * 24 23 14 38 38 H 1.09003 * 117.50147 * 145.02139 * 24 23 14 39 39 H 1.09003 * 117.50172 * 214.97982 * 25 23 14 40 40 H 1.09000 * 117.49992 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0059 5 1 4.3908 1.2078 -0.0108 6 6 3.6142 -0.7155 -0.0031 7 6 4.8350 -1.5990 -0.0080 8 6 2.3271 -1.1330 0.0049 9 6 1.8599 -2.5658 0.0100 10 1 2.7235 -3.2294 0.0527 11 6 1.0631 -2.8469 -1.2655 12 6 0.9834 -2.8041 1.2126 13 8 0.4944 -1.8638 1.8024 14 7 0.7385 -4.0622 1.6293 15 6 0.0159 -4.2765 2.7746 16 1 0.0475 -3.5535 3.5762 17 6 -0.7570 -5.4238 2.9037 18 7 -0.9620 -6.1988 1.8625 19 14 -1.5050 -5.8647 4.5577 20 1 -1.1270 -4.8377 5.5614 21 1 -2.9840 -5.9161 4.4343 22 1 -0.9982 -7.1911 4.9924 23 6 1.2443 -5.2007 0.8585 24 6 1.9429 -6.3219 1.6304 25 6 2.7619 -5.3673 0.7580 26 1 -0.3634 0.0524 1.0263 27 1 -0.3634 0.8626 -0.5586 28 1 -0.3634 -0.9151 -0.4677 29 1 5.1238 -1.8139 -1.0368 30 1 5.6538 -1.0901 0.5006 31 1 4.6103 -2.5321 0.5087 32 1 1.7193 -2.7568 -2.1312 33 1 0.6540 -3.8564 -1.2233 34 1 0.2483 -2.1280 -1.3508 35 1 -1.5602 -6.9590 1.9339 36 1 0.6485 -5.4827 -0.0095 37 1 2.0257 -6.2127 2.7118 38 1 1.8068 -7.3416 1.2699 39 1 3.1644 -5.7594 -0.1761 40 1 3.3839 -4.6296 1.2649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273138118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:46 Heat of formation + Delta-G solvation = 68.557529 kcal Electronic energy + Delta-G solvation = -22796.542576 eV Core-core repulsion = 19614.189863 eV Total energy + Delta-G solvation = -3182.352713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03698 -38.74406 -36.07929 -33.72776 -32.93198 -32.70563 -31.02878 -29.76314 -27.55167 -26.43465 -25.25280 -23.37347 -21.55935 -21.25702 -19.78130 -19.61524 -18.16971 -16.82424 -16.74413 -15.57056 -15.06994 -14.86624 -14.32010 -14.18765 -13.75693 -13.23452 -13.13532 -13.10786 -12.87438 -12.57827 -12.23372 -11.94684 -11.91013 -11.57691 -11.53565 -11.22482 -10.98252 -10.88754 -10.78179 -10.66313 -10.36393 -10.25286 -9.94587 -9.56040 -9.33701 -8.79183 -8.72982 -8.25209 -7.80268 -7.51180 -6.22677 -3.82368 2.23391 3.18157 3.21395 3.25307 3.29492 3.35657 4.03329 4.20041 4.72031 4.85262 4.95623 5.14858 5.16922 5.26041 5.52108 5.61968 5.72553 5.76852 5.81155 5.85028 5.90387 5.99956 6.06419 6.21585 6.23064 6.24841 6.43445 6.48943 6.54836 6.60248 6.72962 6.76755 6.85473 6.94681 7.21056 7.25606 7.65437 7.67003 8.15927 8.27805 8.61357 9.30729 9.52235 10.12788 10.84232 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.006252 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.484078 B = 4477.406014 C = 5037.207733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.123 3.877 3 N -0.315 5.315 4 N -0.488 5.488 5 H 0.431 0.569 6 C 0.074 3.926 7 C -0.090 4.090 8 C -0.196 4.196 9 C -0.032 4.032 10 H 0.091 0.909 11 C -0.138 4.138 12 C 0.469 3.531 13 O -0.571 6.571 14 N -0.426 5.426 15 C -0.306 4.306 16 H 0.092 0.908 17 C 0.042 3.958 18 N -0.874 5.874 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.135 3.865 24 C -0.145 4.145 25 C -0.227 4.227 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.265 0.735 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 2.888 -6.657 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.044 4.044 3 N -0.138 5.138 4 N -0.196 5.196 5 H 0.273 0.727 6 C -0.054 4.054 7 C -0.149 4.149 8 C -0.208 4.208 9 C -0.055 4.055 10 H 0.109 0.891 11 C -0.196 4.196 12 C 0.257 3.743 13 O -0.454 6.454 14 N -0.145 5.145 15 C -0.434 4.434 16 H 0.109 0.891 17 C -0.162 4.162 18 N -0.512 5.512 19 Si 0.742 3.258 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.029 3.971 24 C -0.182 4.182 25 C -0.265 4.265 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.114 4.390 -6.357 11.948 hybrid contribution 0.069 -1.077 0.866 1.384 sum 9.182 3.313 -5.490 11.200 Atomic orbital electron populations 1.20319 0.86681 1.01494 1.03998 1.22121 0.97009 0.89621 0.95624 1.77209 0.86294 1.22519 1.27810 1.45968 1.07215 1.04474 1.61899 0.72651 1.20727 0.96704 0.85030 1.02911 1.20428 0.92850 0.98633 1.02952 1.19365 0.90770 0.95710 1.14943 1.19601 0.98884 0.91625 0.95364 0.89136 1.21789 0.99949 1.02420 0.95409 1.20005 0.84903 0.83293 0.86106 1.90494 1.54644 1.41466 1.58766 1.43037 1.46599 1.02265 1.22635 1.19490 1.24235 1.06162 0.93514 0.89053 1.25249 0.96230 0.96694 0.98038 1.69840 1.35375 1.17168 1.28811 0.86041 0.78774 0.78303 0.82680 1.19451 1.20824 1.20833 1.21116 0.88305 0.90440 0.97200 1.22722 1.02261 0.94800 0.98445 1.23553 0.96264 1.04634 1.02080 0.88972 0.92910 0.90424 0.90458 0.91512 0.89606 0.92925 0.91627 0.92087 0.92484 0.87726 0.89224 0.89843 0.89494 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 8.57 36.00 0.31 -0.93 16 2 C 0.12 2.38 6.54 -82.41 -0.54 1.84 16 3 N -0.31 -5.83 12.70 33.67 0.43 -5.40 16 4 N -0.49 -7.32 7.36 33.47 0.25 -7.08 16 5 H 0.43 4.75 8.96 -182.61 -1.64 3.11 16 6 C 0.07 1.13 7.21 -82.27 -0.59 0.54 16 7 C -0.09 -0.99 10.08 36.00 0.36 -0.62 16 8 C -0.20 -3.61 4.58 -105.05 -0.48 -4.09 16 9 C -0.03 -0.59 2.13 -92.92 -0.20 -0.79 16 10 H 0.09 1.53 3.80 -51.93 -0.20 1.33 16 11 C -0.14 -2.31 8.97 37.16 0.33 -1.97 16 12 C 0.47 11.04 6.55 -10.98 -0.07 10.96 16 13 O -0.57 -15.15 12.58 5.54 0.07 -15.08 16 14 N -0.43 -10.42 2.90 -107.73 -0.31 -10.73 16 15 C -0.31 -8.30 8.68 -14.93 -0.13 -8.43 16 16 H 0.09 2.64 7.60 -52.49 -0.40 2.24 16 17 C 0.04 1.09 4.80 -17.47 -0.08 1.00 16 18 N -0.87 -22.58 11.01 55.50 0.61 -21.97 16 19 Si 0.91 20.63 29.57 -169.99 -5.03 15.60 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.13 2.85 2.74 -67.94 -0.19 2.66 16 24 C -0.14 -2.86 8.78 -26.70 -0.23 -3.09 16 25 C -0.23 -3.85 8.41 -26.69 -0.22 -4.07 16 26 H 0.09 1.91 7.01 -51.93 -0.36 1.54 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.44 5.07 -51.93 -0.26 1.18 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.99 7.10 -51.93 -0.37 0.62 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.12 6.24 -51.93 -0.32 0.80 16 34 H 0.06 1.04 5.22 -51.93 -0.27 0.77 16 35 H 0.26 6.56 8.32 -40.82 -0.34 6.23 16 36 H 0.11 2.29 7.10 -51.93 -0.37 1.92 16 37 H 0.09 1.93 7.96 -51.92 -0.41 1.51 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.41 7.49 -51.93 -0.39 1.02 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -31.44 316.21 -7.62 -39.06 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.67 Total: 7.82 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.74 Total: -7.00 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.97 Total: -45.17 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.07 Total: -15.08 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.44 -7.62 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273138118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.621 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds