Wall clock time and date at job start Mon Mar 30 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30841 * 125.90156 * 2 1 4 4 N 1.40086 * 108.20440 * 180.25391 * 3 2 1 5 5 H 0.96999 * 126.03326 * 179.73603 * 4 3 2 6 6 C 1.34948 * 107.92596 * 359.71684 * 4 3 2 7 7 C 1.50697 * 126.12272 * 179.97438 * 6 4 3 8 8 C 1.35309 * 107.74551 * 359.97438 * 6 4 3 9 9 C 1.50702 * 126.03630 * 179.97438 * 8 6 4 10 10 H 1.08996 * 109.47230 * 2.59081 * 9 8 6 11 11 C 1.53001 * 109.47281 * 242.58664 * 9 8 6 12 12 C 1.50708 * 109.46970 * 122.58675 * 9 8 6 13 13 O 1.21295 * 119.99723 * 17.89721 * 12 9 8 14 14 N 1.34775 * 119.99886 * 197.61625 * 12 9 8 15 15 C 1.37104 * 119.99569 * 175.62420 * 14 12 9 16 16 H 1.08002 * 120.00079 * 330.18091 * 15 14 12 17 17 C 1.38945 * 119.99446 * 150.18028 * 15 14 12 18 18 N 1.31408 * 120.00637 * 349.54535 * 17 15 14 19 19 Si 1.86804 * 119.99788 * 169.54643 * 17 15 14 20 20 H 1.48501 * 109.46817 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47349 * 119.99631 * 19 17 15 22 22 H 1.48497 * 109.47329 * 239.99987 * 19 17 15 23 23 C 1.46496 * 120.00439 * 355.62721 * 14 12 9 24 24 C 1.52994 * 117.50162 * 133.23529 * 23 14 12 25 25 C 1.52999 * 117.49794 * 64.57254 * 23 14 12 26 26 H 1.09001 * 109.47546 * 272.92551 * 1 2 3 27 27 H 1.09002 * 109.47259 * 32.92812 * 1 2 3 28 28 H 1.09002 * 109.47175 * 152.92780 * 1 2 3 29 29 H 1.09002 * 109.47063 * 270.01851 * 7 6 4 30 30 H 1.09000 * 109.47367 * 30.02455 * 7 6 4 31 31 H 1.09002 * 109.47219 * 150.02213 * 7 6 4 32 32 H 1.08996 * 109.47373 * 64.75614 * 11 9 8 33 33 H 1.09005 * 109.47049 * 184.75801 * 11 9 8 34 34 H 1.08999 * 109.46910 * 304.75521 * 11 9 8 35 35 H 0.96998 * 120.00522 * 185.03629 * 18 17 15 36 36 H 1.08999 * 115.54926 * 278.91041 * 23 14 12 37 37 H 1.09007 * 117.49869 * 0.02562 * 24 23 14 38 38 H 1.09003 * 117.50147 * 145.02139 * 24 23 14 39 39 H 1.09003 * 117.50172 * 214.97982 * 25 23 14 40 40 H 1.09000 * 117.49992 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0059 5 1 4.3908 1.2078 -0.0108 6 6 3.6142 -0.7155 -0.0031 7 6 4.8350 -1.5990 -0.0080 8 6 2.3271 -1.1330 0.0049 9 6 1.8599 -2.5658 0.0100 10 1 2.7235 -3.2294 0.0527 11 6 1.0631 -2.8469 -1.2655 12 6 0.9834 -2.8041 1.2126 13 8 0.4944 -1.8638 1.8024 14 7 0.7385 -4.0622 1.6293 15 6 0.0159 -4.2765 2.7746 16 1 0.0475 -3.5535 3.5762 17 6 -0.7570 -5.4238 2.9037 18 7 -0.9620 -6.1988 1.8625 19 14 -1.5050 -5.8647 4.5577 20 1 -1.1270 -4.8377 5.5614 21 1 -2.9840 -5.9161 4.4343 22 1 -0.9982 -7.1911 4.9924 23 6 1.2443 -5.2007 0.8585 24 6 1.9429 -6.3219 1.6304 25 6 2.7619 -5.3673 0.7580 26 1 -0.3634 0.0524 1.0263 27 1 -0.3634 0.8626 -0.5586 28 1 -0.3634 -0.9151 -0.4677 29 1 5.1238 -1.8139 -1.0368 30 1 5.6538 -1.0901 0.5006 31 1 4.6103 -2.5321 0.5087 32 1 1.7193 -2.7568 -2.1312 33 1 0.6540 -3.8564 -1.2233 34 1 0.2483 -2.1280 -1.3508 35 1 -1.5602 -6.9590 1.9339 36 1 0.6485 -5.4827 -0.0095 37 1 2.0257 -6.2127 2.7118 38 1 1.8068 -7.3416 1.2699 39 1 3.1644 -5.7594 -0.1761 40 1 3.3839 -4.6296 1.2649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273138118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:46 Heat of formation + Delta-G solvation = 48.355019 kcal Electronic energy + Delta-G solvation = -22797.418623 eV Core-core repulsion = 19614.189863 eV Total energy + Delta-G solvation = -3183.228760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.35540 -40.44882 -37.77780 -35.31584 -34.45616 -34.17096 -32.86300 -31.04126 -28.93198 -27.61414 -27.11290 -24.90893 -23.00609 -22.91001 -21.31271 -20.99477 -19.64015 -18.66882 -18.12623 -17.24497 -16.80303 -16.21861 -15.95479 -15.79510 -15.31059 -14.78943 -14.60316 -14.49421 -14.15983 -13.76216 -13.57989 -13.43635 -13.24224 -13.17381 -12.99259 -12.84338 -12.58496 -12.49086 -12.26223 -12.18185 -12.05916 -12.01240 -11.50310 -11.14124 -10.93534 -10.55037 -10.04951 -9.97751 -9.43302 -9.17415 -8.19719 -5.86350 0.98230 1.37003 1.41970 1.52944 1.81804 2.08796 2.23742 2.35742 3.08283 3.18853 3.32785 3.81991 3.86857 4.06642 4.23941 4.31282 4.38140 4.43132 4.48889 4.54867 4.62490 4.77324 4.79619 4.85215 4.90293 5.00096 5.03495 5.15025 5.17413 5.26261 5.27367 5.30931 5.48825 5.50708 5.53814 5.61257 5.84346 6.27152 6.57919 6.70367 6.85203 7.35632 7.66409 8.27291 8.84213 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.006252 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.484078 B = 4477.406014 C = 5037.207733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.099 3.901 3 N -0.340 5.340 4 N -0.472 5.472 5 H 0.449 0.551 6 C 0.095 3.905 7 C -0.091 4.091 8 C -0.236 4.236 9 C -0.014 4.014 10 H 0.112 0.888 11 C -0.134 4.134 12 C 0.456 3.544 13 O -0.613 6.613 14 N -0.438 5.438 15 C -0.336 4.336 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.882 5.882 19 Si 0.968 3.032 20 H -0.280 1.280 21 H -0.279 1.279 22 H -0.268 1.268 23 C 0.109 3.891 24 C -0.154 4.154 25 C -0.181 4.181 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.269 0.731 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.077 2.024 -8.081 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.066 4.066 3 N -0.165 5.165 4 N -0.182 5.182 5 H 0.296 0.704 6 C -0.034 4.034 7 C -0.149 4.149 8 C -0.248 4.248 9 C -0.036 4.036 10 H 0.129 0.871 11 C -0.191 4.191 12 C 0.246 3.754 13 O -0.498 6.498 14 N -0.157 5.157 15 C -0.464 4.464 16 H 0.076 0.924 17 C -0.188 4.188 18 N -0.520 5.520 19 Si 0.793 3.207 20 H -0.205 1.205 21 H -0.205 1.205 22 H -0.193 1.193 23 C 0.005 3.995 24 C -0.192 4.192 25 C -0.218 4.218 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.148 0.852 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.799 3.519 -7.802 14.577 hybrid contribution -0.720 -0.751 1.314 1.676 sum 11.079 2.768 -6.488 13.134 Atomic orbital electron populations 1.20164 0.87381 1.02058 1.02177 1.22217 0.97158 0.90614 0.96609 1.77119 0.87812 1.22743 1.28814 1.46003 1.06829 1.04987 1.60394 0.70443 1.21343 0.97287 0.85294 0.99498 1.20647 0.91340 0.97657 1.05235 1.19503 0.92093 0.95250 1.17918 1.19451 0.98431 0.92487 0.93245 0.87054 1.21774 1.00095 1.01453 0.95817 1.21036 0.84856 0.82492 0.86976 1.90469 1.56287 1.42720 1.60365 1.43219 1.46656 1.03670 1.22170 1.19320 1.26422 1.06351 0.94353 0.92429 1.25767 0.96141 0.96155 1.00724 1.69907 1.35254 1.17104 1.29727 0.85261 0.78047 0.78151 0.79231 1.20518 1.20491 1.19291 1.21087 0.91143 0.90317 0.96995 1.22674 1.03677 0.95442 0.97402 1.23623 0.93096 1.02372 1.02748 0.92110 0.90948 0.91055 0.87440 0.88885 0.89800 0.89546 0.92400 0.93356 0.92152 0.88804 0.91691 0.88791 0.85231 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.31 8.57 71.23 0.61 -1.70 16 2 C 0.10 3.87 6.54 43.10 0.28 4.16 16 3 N -0.34 -12.38 12.70 -47.38 -0.60 -12.99 16 4 N -0.47 -13.05 7.36 -48.01 -0.35 -13.40 16 5 H 0.45 8.52 8.96 -213.33 -1.91 6.61 16 6 C 0.10 2.65 7.21 41.40 0.30 2.95 16 7 C -0.09 -1.54 10.08 71.24 0.72 -0.83 16 8 C -0.24 -8.40 4.58 -20.14 -0.09 -8.50 16 9 C -0.01 -0.50 2.13 -12.28 -0.03 -0.52 16 10 H 0.11 3.43 3.80 -2.39 -0.01 3.42 16 11 C -0.13 -4.30 8.97 71.98 0.65 -3.66 16 12 C 0.46 22.01 6.55 87.66 0.57 22.58 16 13 O -0.61 -34.23 12.58 -3.08 -0.04 -34.27 16 14 N -0.44 -21.91 2.90 -613.14 -1.78 -23.69 16 15 C -0.34 -18.98 8.68 84.04 0.73 -18.25 16 16 H 0.06 3.56 7.60 -2.91 -0.02 3.53 16 17 C 0.02 0.81 4.80 84.93 0.41 1.22 16 18 N -0.88 -45.89 11.01 21.66 0.24 -45.66 16 19 Si 0.97 43.08 29.57 68.60 2.03 45.10 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 C 0.11 4.54 2.74 44.99 0.12 4.66 16 24 C -0.15 -5.91 8.78 30.62 0.27 -5.64 16 25 C -0.18 -5.54 8.41 30.62 0.26 -5.28 16 26 H 0.06 2.71 7.01 -2.39 -0.02 2.69 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.07 2.79 5.07 -2.39 -0.01 2.78 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.53 7.10 -2.39 -0.02 1.52 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.93 6.24 -2.38 -0.01 1.91 16 34 H 0.05 1.66 5.22 -2.39 -0.01 1.65 16 35 H 0.27 13.26 8.32 -92.71 -0.77 12.48 16 36 H 0.09 4.07 7.10 -2.39 -0.02 4.05 16 37 H 0.06 2.80 7.96 -2.38 -0.02 2.78 16 38 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.09 2.69 7.49 -2.39 -0.02 2.67 16 Total: -1.00 -72.09 316.21 3.45 -68.63 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.84 Total: 25.09 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 4.80 Total: -8.82 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -2.50 Total: -95.74 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.04 Total: -34.27 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -72.09 3.45 -68.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273138118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.990 kcal (2) G-P(sol) polarization free energy of solvation -72.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds