Wall clock time and date at job start Mon Mar 30 2020 02:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50705 * 120.78771 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47209 * 85.02240 * 8 7 2 10 10 N 1.46495 * 109.47269 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00396 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99290 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00355 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47544 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47272 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99914 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99711 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00141 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47174 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47680 * 120.00136 * 20 18 16 23 23 H 1.48502 * 109.46849 * 239.99963 * 20 18 16 24 24 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 25 25 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 26 26 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 27 27 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 29 29 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46791 * 205.01950 * 8 7 2 31 31 H 1.08990 * 109.47344 * 325.02359 * 8 7 2 32 32 H 1.09003 * 109.47285 * 300.00291 * 9 8 7 33 33 H 1.09008 * 109.46932 * 59.99900 * 9 8 7 34 34 H 0.97003 * 120.00179 * 0.02562 * 10 9 8 35 35 H 0.96993 * 120.00266 * 359.97438 * 13 11 10 36 36 H 1.09004 * 109.47082 * 299.99839 * 14 13 11 37 37 H 1.08999 * 109.47299 * 59.99185 * 14 13 11 38 38 H 1.09004 * 109.46955 * 300.00107 * 15 14 13 39 39 H 1.08999 * 109.47333 * 59.99396 * 15 14 13 40 40 H 0.97001 * 119.99731 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0005 9 6 1.1282 -2.9032 -1.4366 10 7 0.4231 -4.1873 -1.4366 11 6 0.0098 -4.7292 -2.5994 12 8 0.2227 -4.1524 -3.6484 13 7 -0.6393 -5.9103 -2.5994 14 6 -1.0880 -6.4996 -3.8634 15 6 -1.7908 -7.8297 -3.5850 16 6 -2.2529 -8.4356 -4.8851 17 1 -2.0638 -7.9233 -5.8169 18 6 -2.9161 -9.6443 -4.8852 19 7 -3.1458 -10.2684 -3.7505 20 14 -3.4883 -10.3956 -6.4969 21 1 -3.1104 -9.5022 -7.6213 22 1 -2.8460 -11.7219 -6.6805 23 1 -4.9639 -10.5598 -6.4701 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5136 27 1 1.6675 2.1276 0.0004 28 1 5.3046 0.1284 0.0005 29 1 4.1736 -2.0589 -0.0009 30 1 2.1239 -3.2830 0.4356 31 1 0.5699 -2.4289 0.5892 32 1 0.4873 -2.1363 -1.8717 33 1 2.0414 -2.9904 -2.0253 34 1 0.2530 -4.6472 -0.5997 35 1 -0.8087 -6.3706 -1.7626 36 1 -1.7815 -5.8180 -4.3561 37 1 -0.2274 -6.6720 -4.5097 38 1 -1.0969 -8.5111 -3.0925 39 1 -2.6513 -7.6577 -2.9385 40 1 -3.6121 -11.1190 -3.7507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273216522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:01 Heat of formation + Delta-G solvation = -19.259838 kcal Electronic energy + Delta-G solvation = -20066.568634 eV Core-core repulsion = 16880.407874 eV Total energy + Delta-G solvation = -3186.160760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72133 -39.55806 -36.25000 -34.79362 -33.91168 -32.87708 -32.61631 -30.14432 -28.91201 -27.53146 -25.02705 -23.87548 -22.77341 -21.52848 -21.06952 -20.55525 -18.08612 -17.13522 -16.75233 -16.35238 -15.91975 -15.54372 -15.36627 -14.66098 -14.51567 -14.35742 -14.00968 -13.69763 -13.64464 -13.15656 -13.07518 -12.87486 -12.58039 -12.29592 -12.27928 -12.05272 -11.44854 -11.18593 -11.04809 -10.62142 -10.33248 -9.99505 -9.80851 -9.75571 -9.56250 -9.25430 -9.21750 -9.07041 -8.49816 -8.26524 -6.10083 -4.12513 0.79868 0.89124 2.97852 3.28129 3.35838 3.41340 3.46806 3.56811 4.14215 4.27281 4.34307 4.41054 4.57512 4.62781 4.68015 4.78237 4.89314 5.10376 5.11583 5.25213 5.27234 5.35485 5.46203 5.58179 5.62384 5.74883 5.85854 6.04157 6.28438 6.39037 6.39547 6.53372 6.76950 6.98359 7.20039 7.56049 7.62425 7.66689 7.89369 8.25010 8.41225 8.92114 8.97898 9.52352 11.01637 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049962 B = 0.002321 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.294243 B =12060.474379 C =12096.315362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.130 4.130 3 C 0.098 3.902 4 N -0.486 5.486 5 C 0.091 3.909 6 C -0.162 4.162 7 C -0.037 4.037 8 C -0.096 4.096 9 C 0.147 3.853 10 N -0.755 5.755 11 C 0.698 3.302 12 O -0.597 6.597 13 N -0.738 5.738 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.394 0.606 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 18.451 13.198 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.132 4.132 3 C -0.059 4.059 4 N -0.194 5.194 5 C -0.065 4.065 6 C -0.182 4.182 7 C -0.046 4.046 8 C -0.133 4.133 9 C 0.022 3.978 10 N -0.412 5.412 11 C 0.398 3.602 12 O -0.476 6.476 13 N -0.392 5.392 14 C 0.017 3.983 15 C -0.025 4.025 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.154 0.846 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.228 0.772 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.813 19.618 12.242 25.528 hybrid contribution -0.868 -1.781 0.028 1.981 sum 9.946 17.838 12.271 23.826 Atomic orbital electron populations 1.20836 0.90064 1.03822 1.02758 1.20851 0.97719 0.93592 1.01034 1.22679 0.89920 0.97429 0.95880 1.67666 1.08369 1.31530 1.11855 1.22731 1.00386 0.87636 0.95766 1.22095 0.94480 0.99903 1.01740 1.19974 0.93638 0.94612 0.96341 1.20832 1.01075 0.93824 0.97590 1.21009 0.97025 0.84848 0.94918 1.45096 1.63917 1.24074 1.08134 1.16055 0.78906 0.81580 0.83697 1.90900 1.62748 1.63430 1.30533 1.45532 1.60751 1.21089 1.11780 1.21597 0.98044 0.96045 0.82614 1.19330 0.95465 0.89654 0.98045 1.21094 1.36778 1.05104 0.92864 0.92153 1.25002 0.95840 0.96979 0.96550 1.69966 1.41745 1.16262 1.25401 0.86453 0.78357 0.79094 0.83643 1.19561 1.20946 1.20949 0.90722 0.90931 0.90632 0.82824 0.82762 0.84603 0.89701 0.89537 0.91503 0.91596 0.77208 0.77382 0.92766 0.92784 0.95972 0.95968 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 9.30 36.00 0.33 -0.42 16 2 C -0.13 -1.07 5.90 -104.49 -0.62 -1.69 16 3 C 0.10 0.87 10.86 -17.55 -0.19 0.67 16 4 N -0.49 -4.98 10.36 -13.26 -0.14 -5.11 16 5 C 0.09 0.78 11.18 -17.55 -0.20 0.58 16 6 C -0.16 -1.28 9.80 -39.44 -0.39 -1.67 16 7 C -0.04 -0.30 5.17 -104.31 -0.54 -0.84 16 8 C -0.10 -0.68 4.80 -27.88 -0.13 -0.81 16 9 C 0.15 1.54 5.50 -4.04 -0.02 1.52 16 10 N -0.75 -8.96 5.56 -65.23 -0.36 -9.32 16 11 C 0.70 12.04 8.57 -86.92 -0.74 11.29 16 12 O -0.60 -12.91 16.34 5.28 0.09 -12.83 16 13 N -0.74 -12.85 5.56 -65.23 -0.36 -13.22 16 14 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.07 0.53 5.63 -51.93 -0.29 0.24 16 27 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 28 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.09 0.53 7.10 -51.93 -0.37 0.16 16 32 H 0.07 0.78 6.98 -51.93 -0.36 0.42 16 33 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.39 3.44 8.49 -40.82 -0.35 3.09 16 35 H 0.39 5.78 8.49 -40.82 -0.35 5.44 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -34.16 340.24 -8.91 -43.07 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.90 Total: 2.67 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.07 Total: -1.41 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.13 Total: -52.95 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.16 -8.91 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273216522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.806 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds