Wall clock time and date at job start Mon Mar 30 2020 02:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50705 * 120.78771 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47209 * 85.02240 * 8 7 2 10 10 N 1.46495 * 109.47269 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00396 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99290 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00355 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47544 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47272 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99914 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99711 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00141 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47174 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47680 * 120.00136 * 20 18 16 23 23 H 1.48502 * 109.46849 * 239.99963 * 20 18 16 24 24 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 25 25 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 26 26 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 27 27 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 29 29 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46791 * 205.01950 * 8 7 2 31 31 H 1.08990 * 109.47344 * 325.02359 * 8 7 2 32 32 H 1.09003 * 109.47285 * 300.00291 * 9 8 7 33 33 H 1.09008 * 109.46932 * 59.99900 * 9 8 7 34 34 H 0.97003 * 120.00179 * 0.02562 * 10 9 8 35 35 H 0.96993 * 120.00266 * 359.97438 * 13 11 10 36 36 H 1.09004 * 109.47082 * 299.99839 * 14 13 11 37 37 H 1.08999 * 109.47299 * 59.99185 * 14 13 11 38 38 H 1.09004 * 109.46955 * 300.00107 * 15 14 13 39 39 H 1.08999 * 109.47333 * 59.99396 * 15 14 13 40 40 H 0.97001 * 119.99731 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0005 9 6 1.1282 -2.9032 -1.4366 10 7 0.4231 -4.1873 -1.4366 11 6 0.0098 -4.7292 -2.5994 12 8 0.2227 -4.1524 -3.6484 13 7 -0.6393 -5.9103 -2.5994 14 6 -1.0880 -6.4996 -3.8634 15 6 -1.7908 -7.8297 -3.5850 16 6 -2.2529 -8.4356 -4.8851 17 1 -2.0638 -7.9233 -5.8169 18 6 -2.9161 -9.6443 -4.8852 19 7 -3.1458 -10.2684 -3.7505 20 14 -3.4883 -10.3956 -6.4969 21 1 -3.1104 -9.5022 -7.6213 22 1 -2.8460 -11.7219 -6.6805 23 1 -4.9639 -10.5598 -6.4701 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5136 27 1 1.6675 2.1276 0.0004 28 1 5.3046 0.1284 0.0005 29 1 4.1736 -2.0589 -0.0009 30 1 2.1239 -3.2830 0.4356 31 1 0.5699 -2.4289 0.5892 32 1 0.4873 -2.1363 -1.8717 33 1 2.0414 -2.9904 -2.0253 34 1 0.2530 -4.6472 -0.5997 35 1 -0.8087 -6.3706 -1.7626 36 1 -1.7815 -5.8180 -4.3561 37 1 -0.2274 -6.6720 -4.5097 38 1 -1.0969 -8.5111 -3.0925 39 1 -2.6513 -7.6577 -2.9385 40 1 -3.6121 -11.1190 -3.7507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273216522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:00 Heat of formation + Delta-G solvation = -43.071581 kcal Electronic energy + Delta-G solvation = -20067.601189 eV Core-core repulsion = 16880.407874 eV Total energy + Delta-G solvation = -3187.193314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.38344 -40.88120 -37.24949 -36.39368 -34.94522 -34.66899 -33.32170 -31.65932 -30.05462 -28.13715 -26.73607 -24.93545 -23.42461 -22.86935 -22.23126 -21.89903 -19.43140 -18.42722 -17.78251 -17.47335 -17.06592 -16.76992 -16.47381 -15.98455 -15.60870 -15.54652 -15.16443 -14.97076 -14.65657 -14.27659 -14.23483 -13.60794 -13.56272 -13.29124 -13.18565 -13.01735 -12.93832 -12.68691 -12.50708 -12.24593 -12.04919 -11.67999 -11.49698 -11.22077 -10.60285 -10.44719 -10.39648 -10.34752 -9.81350 -9.71369 -8.23500 -6.33272 0.19675 0.25691 1.41687 1.42845 1.55737 1.76928 2.17022 2.42052 2.83058 3.11495 3.34582 3.59879 3.77879 3.80869 3.95864 4.04913 4.07276 4.23956 4.46042 4.50598 4.53577 4.57387 4.76632 4.78943 4.82610 4.87952 4.92938 5.00768 5.10780 5.27904 5.32749 5.44156 5.47647 5.53184 5.61185 5.80191 5.81991 6.06741 6.18574 6.80194 7.04517 7.15213 7.36077 7.60884 8.88552 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049962 B = 0.002321 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.294243 B =12060.474379 C =12096.315362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C 0.082 3.918 4 N -0.514 5.514 5 C 0.077 3.923 6 C -0.164 4.164 7 C -0.049 4.049 8 C -0.081 4.081 9 C 0.148 3.852 10 N -0.730 5.730 11 C 0.696 3.304 12 O -0.643 6.643 13 N -0.732 5.732 14 C 0.160 3.840 15 C 0.024 3.976 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.156 0.844 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.414 0.586 35 H 0.408 0.592 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.290 18.378 13.886 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.137 4.137 3 C -0.074 4.074 4 N -0.223 5.223 5 C -0.079 4.079 6 C -0.184 4.184 7 C -0.058 4.058 8 C -0.118 4.118 9 C 0.024 3.976 10 N -0.388 5.388 11 C 0.396 3.604 12 O -0.525 6.525 13 N -0.387 5.387 14 C 0.036 3.964 15 C -0.014 4.014 16 C -0.584 4.584 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.186 0.814 28 H 0.190 0.810 29 H 0.174 0.826 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.251 0.749 35 H 0.244 0.756 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.857 19.553 13.005 25.871 hybrid contribution -0.841 -1.706 -0.134 1.907 sum 10.015 17.847 12.871 24.176 Atomic orbital electron populations 1.20857 0.88902 1.03861 1.03640 1.21076 0.98635 0.93504 1.00453 1.23000 0.89828 0.98484 0.96121 1.67664 1.09198 1.32606 1.12808 1.23118 1.01420 0.87646 0.95747 1.22357 0.94664 1.00460 1.00873 1.20167 0.93996 0.94991 0.96629 1.20735 1.02110 0.93757 0.95242 1.21069 0.95845 0.83541 0.97156 1.44873 1.62413 1.24210 1.07282 1.16184 0.78650 0.81130 0.84426 1.90873 1.64425 1.64515 1.32689 1.45191 1.60919 1.21470 1.11091 1.21064 0.96938 0.94376 0.84059 1.19130 0.94799 0.90789 0.96648 1.21497 1.37214 1.05740 0.93902 0.92387 1.25857 0.95836 0.97422 1.00082 1.70059 1.42329 1.16758 1.27427 0.85404 0.78031 0.78252 0.79400 1.19053 1.20231 1.20222 0.89323 0.90291 0.91192 0.81394 0.80967 0.82643 0.87825 0.87929 0.92686 0.93008 0.74903 0.75623 0.93906 0.93970 0.97204 0.97171 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.30 71.24 0.66 -0.64 16 2 C -0.13 -2.05 5.90 -19.78 -0.12 -2.16 16 3 C 0.08 1.40 10.86 84.68 0.92 2.32 16 4 N -0.51 -10.30 10.36 -195.85 -2.03 -12.33 16 5 C 0.08 1.24 11.18 84.67 0.95 2.19 16 6 C -0.16 -2.32 9.80 22.36 0.22 -2.10 16 7 C -0.05 -0.72 5.17 -19.66 -0.10 -0.82 16 8 C -0.08 -0.95 4.80 29.85 0.14 -0.80 16 9 C 0.15 2.89 5.50 86.38 0.47 3.36 16 10 N -0.73 -15.95 5.56 -478.53 -2.66 -18.61 16 11 C 0.70 23.41 8.57 179.06 1.53 24.95 16 12 O -0.64 -27.81 16.34 -4.01 -0.07 -27.88 16 13 N -0.73 -24.95 5.56 -478.54 -2.66 -27.61 16 14 C 0.16 6.91 5.61 86.38 0.48 7.39 16 15 C 0.02 1.19 5.09 29.85 0.15 1.34 16 16 C -0.55 -30.35 9.11 25.60 0.23 -30.12 16 17 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -53.80 13.29 21.45 0.28 -53.52 16 20 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 24 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.08 0.78 8.09 -2.38 -0.02 0.76 16 26 H 0.07 0.88 5.63 -2.39 -0.01 0.86 16 27 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 28 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 30 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 31 H 0.10 0.91 7.10 -2.39 -0.02 0.90 16 32 H 0.05 1.24 6.98 -2.39 -0.02 1.22 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.41 6.00 8.49 -92.71 -0.79 5.22 16 35 H 0.41 11.45 8.49 -92.71 -0.79 10.67 16 36 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -73.46 340.24 0.39 -73.07 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.52 Total: 15.64 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.01 Total: 5.74 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -7.07 Total: -112.07 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.07 Total: -27.88 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -73.46 0.39 -73.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273216522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -73.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds