Wall clock time and date at job start Mon Mar 30 2020 01:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38550 * 120.81755 * 2 1 4 4 C 1.38231 * 119.23351 * 180.25294 * 3 2 1 5 5 N 1.31882 * 120.91881 * 359.74549 * 4 3 2 6 6 C 1.31785 * 121.80026 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.67363 * 179.97438 * 6 5 4 8 8 C 1.38885 * 120.66171 * 359.97438 * 6 5 4 9 9 N 1.39971 * 120.49289 * 179.97438 * 8 6 5 10 10 C 1.34780 * 119.99952 * 125.79370 * 9 8 6 11 11 O 1.21580 * 120.00325 * 357.61649 * 10 9 8 12 12 N 1.34777 * 119.99619 * 177.61212 * 10 9 8 13 13 C 1.46497 * 119.99937 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47471 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47348 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47062 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00187 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99961 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00104 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47082 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47399 * 119.99921 * 20 18 16 23 23 H 1.48501 * 109.46736 * 240.00053 * 20 18 16 24 24 H 1.09007 * 109.47026 * 277.36680 * 1 2 3 25 25 H 1.08995 * 109.47108 * 37.37324 * 1 2 3 26 26 H 1.09002 * 109.47283 * 157.37818 * 1 2 3 27 27 H 1.08001 * 120.38266 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.53671 * 179.72135 * 4 3 2 29 29 H 1.08991 * 109.47529 * 271.07945 * 7 6 5 30 30 H 1.09005 * 109.46783 * 31.08048 * 7 6 5 31 31 H 1.09002 * 109.47416 * 151.07330 * 7 6 5 32 32 H 0.97001 * 119.99986 * 305.80898 * 9 8 6 33 33 H 0.97002 * 120.00520 * 359.71983 * 12 10 9 34 34 H 1.08999 * 109.47053 * 299.99606 * 13 12 10 35 35 H 1.08999 * 109.47465 * 59.99169 * 13 12 10 36 36 H 1.09001 * 109.46638 * 299.99385 * 14 13 12 37 37 H 1.08999 * 109.47348 * 59.99227 * 14 13 12 38 38 H 1.09000 * 109.46899 * 300.00191 * 15 14 13 39 39 H 1.09001 * 109.47063 * 59.99864 * 15 14 13 40 40 H 0.96999 * 120.00544 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1899 0.0000 4 6 3.5986 1.1517 -0.0053 5 7 4.2447 0.0020 -0.0053 6 6 3.6085 -1.1522 -0.0008 7 6 4.3951 -2.4376 -0.0017 8 6 2.2204 -1.1957 0.0047 9 7 1.5483 -2.4235 0.0089 10 6 0.6296 -2.6856 0.9596 11 8 0.4158 -1.8734 1.8387 12 7 -0.0520 -3.8481 0.9357 13 6 -1.0510 -4.1328 1.9688 14 6 -1.6738 -5.5063 1.7113 15 6 -2.7166 -5.8039 2.7906 16 6 -3.3305 -7.1566 2.5366 17 1 -3.0087 -7.7454 1.6903 18 6 -4.3022 -7.6431 3.3852 19 7 -4.6937 -6.9264 4.4161 20 14 -5.0626 -9.3200 3.0708 21 1 -4.4542 -9.9195 1.8560 22 1 -4.8125 -10.2037 4.2377 23 1 -6.5260 -9.1698 2.8683 24 1 -0.3633 0.1318 1.0193 25 1 -0.3633 0.8166 -0.6238 26 1 -0.3634 -0.9486 -0.3953 27 1 1.6965 2.1363 0.0004 28 1 4.1568 2.0762 -0.0099 29 1 4.5972 -2.7392 -1.0293 30 1 5.3375 -2.2872 0.5249 31 1 3.8195 -3.2162 0.4990 32 1 1.7439 -3.0858 -0.6723 33 1 0.1156 -4.4943 0.2320 34 1 -0.5724 -4.1283 2.9480 35 1 -1.8295 -3.3703 1.9414 36 1 -2.1526 -5.5103 0.7321 37 1 -0.8955 -6.2690 1.7383 38 1 -2.2375 -5.8000 3.7696 39 1 -3.4950 -5.0413 2.7639 40 1 -5.3771 -7.2687 5.0134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287704885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:56 Heat of formation + Delta-G solvation = -12.105396 kcal Electronic energy + Delta-G solvation = -20749.472491 eV Core-core repulsion = 17563.621971 eV Total energy + Delta-G solvation = -3185.850520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17548 -39.47767 -35.91035 -34.94811 -34.17082 -33.36034 -31.71914 -30.73027 -28.13609 -27.57922 -26.48613 -23.67341 -22.55701 -21.54778 -20.87389 -20.40817 -18.56017 -17.59075 -16.96618 -16.35962 -15.88587 -15.38298 -15.04546 -14.76345 -14.45117 -14.08675 -14.02173 -13.89181 -13.34972 -13.04966 -12.71153 -12.41438 -12.34168 -12.32807 -11.87691 -11.81536 -11.77587 -10.95721 -10.78593 -10.60046 -10.44319 -10.30286 -9.91147 -9.67666 -9.47685 -9.39451 -9.14817 -8.92654 -8.48213 -8.40476 -6.04877 -4.08101 0.86607 1.09667 2.59150 3.14756 3.27807 3.35504 3.38703 3.57594 4.08417 4.22091 4.42031 4.45177 4.61150 4.90361 5.10808 5.23881 5.30724 5.31112 5.34270 5.41014 5.57659 5.61788 5.73763 5.78339 5.85702 6.01868 6.10896 6.10960 6.21962 6.40995 6.55578 6.61727 6.72057 6.89604 6.96197 7.60276 7.72252 7.80263 7.93519 7.93771 8.34341 8.56488 8.98801 9.56373 11.06433 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041274 B = 0.002785 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.234967 B =10049.987134 C =10439.711656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.028 4.028 3 C -0.169 4.169 4 C 0.093 3.907 5 N -0.479 5.479 6 C 0.118 3.882 7 C -0.104 4.104 8 C 0.113 3.887 9 N -0.690 5.690 10 C 0.699 3.301 11 O -0.574 6.574 12 N -0.736 5.736 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.405 0.595 33 H 0.395 0.605 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 12.879 -12.588 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.038 4.038 3 C -0.190 4.190 4 C -0.064 4.064 5 N -0.189 5.189 6 C -0.022 4.022 7 C -0.161 4.161 8 C 0.017 3.983 9 N -0.342 5.342 10 C 0.400 3.600 11 O -0.450 6.450 12 N -0.391 5.391 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.174 0.826 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.241 0.759 33 H 0.229 0.771 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.992 13.563 -11.584 23.956 hybrid contribution -1.280 -1.479 -0.696 2.076 sum 14.713 12.084 -12.280 22.656 Atomic orbital electron populations 1.20820 0.89715 1.02281 1.03653 1.20416 0.97327 0.91830 0.94241 1.21930 0.95333 0.98314 1.03392 1.22647 0.91723 0.95963 0.96045 1.67494 1.40424 0.97725 1.13300 1.21316 0.89546 0.94654 0.96675 1.20671 1.00272 0.92245 1.02916 1.18004 0.90935 0.85377 1.04015 1.42478 1.42608 1.16992 1.32114 1.15993 0.79187 0.82980 0.81873 1.90949 1.69016 1.47661 1.37379 1.45394 1.42577 1.18508 1.32580 1.21568 0.89124 0.98600 0.89528 1.21898 0.99519 0.92733 1.01690 1.19030 0.92636 0.96809 0.92899 1.21230 1.20959 1.02586 1.11281 0.92595 1.25033 0.96771 0.97541 0.95138 1.69972 1.30637 1.37510 1.15117 0.86527 0.79073 0.84176 0.78158 1.19765 1.20980 1.20991 0.89065 0.91661 0.91804 0.84600 0.82621 0.90429 0.90175 0.90716 0.75870 0.77120 0.91764 0.91794 0.92707 0.92689 0.96231 0.96244 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 8.33 36.01 0.30 -0.97 16 2 C -0.03 -0.34 5.52 -104.14 -0.57 -0.91 16 3 C -0.17 -1.70 9.83 -39.47 -0.39 -2.09 16 4 C 0.09 0.94 11.18 -17.53 -0.20 0.74 16 5 N -0.48 -5.72 10.27 -9.32 -0.10 -5.81 16 6 C 0.12 1.36 6.80 -82.37 -0.56 0.80 16 7 C -0.10 -0.90 9.89 36.00 0.36 -0.54 16 8 C 0.11 1.36 5.81 -83.53 -0.49 0.88 16 9 N -0.69 -7.48 3.87 -14.12 -0.05 -7.54 16 10 C 0.70 9.96 6.90 -86.91 -0.60 9.36 16 11 O -0.57 -10.46 13.68 5.30 0.07 -10.39 16 12 N -0.74 -9.80 5.56 -65.23 -0.36 -10.16 16 13 C 0.13 2.26 5.67 -4.04 -0.02 2.24 16 14 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.09 1.25 7.23 -51.92 -0.38 0.88 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 27 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.63 7.41 -51.93 -0.39 0.25 16 32 H 0.41 3.02 8.76 -40.82 -0.36 2.67 16 33 H 0.40 4.05 8.49 -40.82 -0.35 3.70 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -33.49 336.04 -8.51 -42.00 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.99 Total: 2.03 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.86 Total: -5.59 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.22 Total: -49.33 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.49 -8.51 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287704885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.893 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds