Wall clock time and date at job start Mon Mar 30 2020 01:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38550 * 120.81755 * 2 1 4 4 C 1.38231 * 119.23351 * 180.25294 * 3 2 1 5 5 N 1.31882 * 120.91881 * 359.74549 * 4 3 2 6 6 C 1.31785 * 121.80026 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.67363 * 179.97438 * 6 5 4 8 8 C 1.38885 * 120.66171 * 359.97438 * 6 5 4 9 9 N 1.39971 * 120.49289 * 179.97438 * 8 6 5 10 10 C 1.34780 * 119.99952 * 125.79370 * 9 8 6 11 11 O 1.21580 * 120.00325 * 357.61649 * 10 9 8 12 12 N 1.34777 * 119.99619 * 177.61212 * 10 9 8 13 13 C 1.46497 * 119.99937 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47471 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47348 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47062 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00187 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99961 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00104 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47082 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47399 * 119.99921 * 20 18 16 23 23 H 1.48501 * 109.46736 * 240.00053 * 20 18 16 24 24 H 1.09007 * 109.47026 * 277.36680 * 1 2 3 25 25 H 1.08995 * 109.47108 * 37.37324 * 1 2 3 26 26 H 1.09002 * 109.47283 * 157.37818 * 1 2 3 27 27 H 1.08001 * 120.38266 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.53671 * 179.72135 * 4 3 2 29 29 H 1.08991 * 109.47529 * 271.07945 * 7 6 5 30 30 H 1.09005 * 109.46783 * 31.08048 * 7 6 5 31 31 H 1.09002 * 109.47416 * 151.07330 * 7 6 5 32 32 H 0.97001 * 119.99986 * 305.80898 * 9 8 6 33 33 H 0.97002 * 120.00520 * 359.71983 * 12 10 9 34 34 H 1.08999 * 109.47053 * 299.99606 * 13 12 10 35 35 H 1.08999 * 109.47465 * 59.99169 * 13 12 10 36 36 H 1.09001 * 109.46638 * 299.99385 * 14 13 12 37 37 H 1.08999 * 109.47348 * 59.99227 * 14 13 12 38 38 H 1.09000 * 109.46899 * 300.00191 * 15 14 13 39 39 H 1.09001 * 109.47063 * 59.99864 * 15 14 13 40 40 H 0.96999 * 120.00544 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1899 0.0000 4 6 3.5986 1.1517 -0.0053 5 7 4.2447 0.0020 -0.0053 6 6 3.6085 -1.1522 -0.0008 7 6 4.3951 -2.4376 -0.0017 8 6 2.2204 -1.1957 0.0047 9 7 1.5483 -2.4235 0.0089 10 6 0.6296 -2.6856 0.9596 11 8 0.4158 -1.8734 1.8387 12 7 -0.0520 -3.8481 0.9357 13 6 -1.0510 -4.1328 1.9688 14 6 -1.6738 -5.5063 1.7113 15 6 -2.7166 -5.8039 2.7906 16 6 -3.3305 -7.1566 2.5366 17 1 -3.0087 -7.7454 1.6903 18 6 -4.3022 -7.6431 3.3852 19 7 -4.6937 -6.9264 4.4161 20 14 -5.0626 -9.3200 3.0708 21 1 -4.4542 -9.9195 1.8560 22 1 -4.8125 -10.2037 4.2377 23 1 -6.5260 -9.1698 2.8683 24 1 -0.3633 0.1318 1.0193 25 1 -0.3633 0.8166 -0.6238 26 1 -0.3634 -0.9486 -0.3953 27 1 1.6965 2.1363 0.0004 28 1 4.1568 2.0762 -0.0099 29 1 4.5972 -2.7392 -1.0293 30 1 5.3375 -2.2872 0.5249 31 1 3.8195 -3.2162 0.4990 32 1 1.7439 -3.0858 -0.6723 33 1 0.1156 -4.4943 0.2320 34 1 -0.5724 -4.1283 2.9480 35 1 -1.8295 -3.3703 1.9414 36 1 -2.1526 -5.5103 0.7321 37 1 -0.8955 -6.2690 1.7383 38 1 -2.2375 -5.8000 3.7696 39 1 -3.4950 -5.0413 2.7639 40 1 -5.3771 -7.2687 5.0134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287704885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:55 Heat of formation + Delta-G solvation = -34.803556 kcal Electronic energy + Delta-G solvation = -20750.456757 eV Core-core repulsion = 17563.621971 eV Total energy + Delta-G solvation = -3186.834786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.11181 -40.50622 -37.21901 -36.11395 -35.28978 -34.90109 -33.18885 -31.91464 -28.98393 -28.79358 -27.87172 -25.20196 -23.73114 -22.45447 -22.29023 -21.67324 -19.65374 -18.74481 -18.28352 -17.86918 -16.77302 -16.60550 -16.51786 -16.07957 -15.74009 -15.46789 -15.15012 -14.69087 -14.28684 -14.19698 -13.85554 -13.73968 -13.71079 -13.41837 -13.15832 -13.04574 -12.77964 -12.62574 -12.54182 -12.33440 -11.69295 -11.68056 -11.40279 -11.34800 -11.16524 -10.55548 -10.49159 -10.31688 -10.06324 -9.38244 -8.19192 -6.30371 0.04463 0.24135 1.42152 1.42350 1.53670 1.56171 2.02517 2.42213 2.75710 3.14959 3.15610 3.43005 3.63191 3.83157 4.10961 4.16650 4.24217 4.31352 4.43002 4.56856 4.59098 4.65240 4.69294 4.73661 4.95515 4.96771 4.98824 5.14500 5.17326 5.18416 5.24418 5.35382 5.43601 5.53915 5.72354 5.80876 5.85307 5.88428 6.23247 6.87354 6.96724 6.99117 7.39354 7.47408 8.93135 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041274 B = 0.002785 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.234967 B =10049.987134 C =10439.711656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.049 4.049 3 C -0.169 4.169 4 C 0.091 3.909 5 N -0.499 5.499 6 C 0.110 3.890 7 C -0.101 4.101 8 C 0.092 3.908 9 N -0.670 5.670 10 C 0.701 3.299 11 O -0.616 6.616 12 N -0.723 5.723 13 C 0.151 3.849 14 C -0.100 4.100 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.258 1.258 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.162 0.838 28 H 0.187 0.813 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.423 0.577 33 H 0.414 0.586 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.068 0.932 38 H -0.008 1.008 39 H -0.007 1.007 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.556 12.379 -14.584 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.059 4.059 3 C -0.189 4.189 4 C -0.065 4.065 5 N -0.210 5.210 6 C -0.030 4.030 7 C -0.159 4.159 8 C -0.005 4.005 9 N -0.322 5.322 10 C 0.401 3.599 11 O -0.495 6.495 12 N -0.379 5.379 13 C 0.027 3.973 14 C -0.138 4.138 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.181 1.181 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.179 0.821 28 H 0.204 0.796 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.262 0.738 33 H 0.251 0.749 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.109 13.038 -13.648 25.474 hybrid contribution -1.563 -1.221 -0.077 1.985 sum 15.546 11.817 -13.725 23.868 Atomic orbital electron populations 1.20714 0.89943 1.02640 1.02451 1.20666 0.97477 0.92796 0.94950 1.22231 0.95543 0.98756 1.02376 1.23208 0.92082 0.96612 0.94617 1.67570 1.40983 0.98370 1.14056 1.21690 0.89558 0.95611 0.96168 1.20728 0.99771 0.91042 1.04311 1.18193 0.91423 0.85586 1.05250 1.42153 1.41317 1.17249 1.31526 1.16050 0.79445 0.82473 0.81902 1.90930 1.70342 1.48970 1.39279 1.44990 1.41729 1.18906 1.32287 1.21102 0.89312 0.97156 0.89772 1.21589 0.98265 0.93984 1.00003 1.18944 0.93359 0.95442 0.93703 1.21715 1.20960 1.03554 1.11430 0.91478 1.26017 0.97477 1.01797 0.94864 1.70116 1.31480 1.39688 1.16321 0.85379 0.78034 0.79006 0.78500 1.18138 1.20676 1.20651 0.91577 0.89313 0.92865 0.82060 0.79593 0.88241 0.90291 0.90598 0.73796 0.74937 0.93450 0.93193 0.91215 0.91294 0.98995 0.98901 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 8.33 71.24 0.59 -1.74 16 2 C -0.05 -1.14 5.52 -19.55 -0.11 -1.24 16 3 C -0.17 -3.12 9.83 22.34 0.22 -2.90 16 4 C 0.09 1.66 11.18 84.68 0.95 2.61 16 5 N -0.50 -11.16 10.27 -183.40 -1.88 -13.05 16 6 C 0.11 2.38 6.80 42.72 0.29 2.68 16 7 C -0.10 -1.59 9.89 71.24 0.70 -0.88 16 8 C 0.09 2.13 5.81 38.24 0.22 2.35 16 9 N -0.67 -13.75 3.87 -316.86 -1.23 -14.98 16 10 C 0.70 19.63 6.90 179.05 1.24 20.87 16 11 O -0.62 -22.86 13.68 -3.97 -0.05 -22.91 16 12 N -0.72 -18.51 5.56 -478.55 -2.66 -21.17 16 13 C 0.15 5.10 5.67 86.38 0.49 5.59 16 14 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 15 C 0.02 1.18 4.97 29.85 0.15 1.33 16 16 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 17 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 18 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 19 N -0.94 -56.75 13.29 21.45 0.28 -56.46 16 20 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H 0.07 1.87 7.23 -2.38 -0.02 1.86 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.31 6.43 -2.39 -0.02 1.29 16 27 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 28 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.08 1.15 7.41 -2.39 -0.02 1.14 16 32 H 0.42 5.48 8.76 -92.71 -0.81 4.66 16 33 H 0.41 7.53 8.49 -92.71 -0.79 6.75 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -73.65 336.04 1.54 -72.10 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -0.54 Total: 15.08 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.60 Total: -3.96 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -5.49 Total: -105.66 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.65 1.54 -72.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287704885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.301 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds