Wall clock time and date at job start Mon Mar 30 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35172 * 126.04964 * 2 1 4 4 C 1.40521 * 107.87699 * 180.22957 * 3 2 1 5 5 N 1.39667 * 125.98877 * 179.79038 * 4 3 2 6 6 C 1.34780 * 120.00388 * 0.02562 * 5 4 3 7 7 O 1.21766 * 119.99578 * 359.97438 * 6 5 4 8 8 C 1.46108 * 120.00441 * 179.97438 * 6 5 4 9 9 H 1.07998 * 120.00325 * 0.02562 * 8 6 5 10 10 C 1.40131 * 120.00143 * 180.02562 * 8 6 5 11 11 N 1.30638 * 119.99824 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 120.00057 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47279 * 89.99846 * 12 10 8 14 14 H 1.48498 * 109.46868 * 210.00006 * 12 10 8 15 15 H 1.48503 * 109.46769 * 329.99711 * 12 10 8 16 16 N 1.31415 * 108.02025 * 359.77192 * 4 3 2 17 17 N 1.35064 * 126.04801 * 179.83473 * 2 1 3 18 18 C 1.46500 * 125.97232 * 0.03366 * 17 2 1 19 19 C 1.52997 * 109.47473 * 239.71529 * 18 17 2 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.09000 * 109.47237 * 270.16509 * 1 2 3 25 25 H 1.08998 * 109.47229 * 30.16542 * 1 2 3 26 26 H 1.09000 * 109.47064 * 150.16381 * 1 2 3 27 27 H 1.07993 * 126.06215 * 359.96026 * 3 2 1 28 28 H 0.96998 * 120.00253 * 179.97438 * 5 4 3 29 29 H 0.97000 * 120.00001 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.46845 * 359.72078 * 18 17 2 31 31 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 32 32 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 33 33 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 35 35 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 36 36 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 37 37 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 39 39 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 40 40 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3025 1.0929 0.0000 4 6 3.6376 0.6546 -0.0054 5 7 4.7698 1.4724 -0.0112 6 6 4.6328 2.8132 -0.0116 7 8 3.5218 3.3116 -0.0073 8 6 5.8172 3.6687 -0.0172 9 1 6.8026 3.2267 -0.0214 10 6 5.6747 5.0627 -0.0170 11 7 4.4827 5.5974 -0.0124 12 14 7.1890 6.1565 -0.0249 13 1 7.5835 6.4457 -1.4270 14 1 6.8838 7.4295 0.6762 15 1 8.3036 5.4636 0.6700 16 7 3.6341 -0.6595 -0.0035 17 7 2.3018 -1.0920 0.0031 18 6 1.8496 -2.4855 0.0065 19 6 2.3834 -3.1920 1.2541 20 6 1.9116 -4.6475 1.2572 21 6 2.4354 -5.3560 0.0064 22 6 1.9015 -4.6495 -1.2412 23 6 2.3733 -3.1941 -1.2444 24 1 -0.3634 0.0030 1.0276 25 1 -0.3633 0.8885 -0.5164 26 1 -0.3633 -0.8914 -0.5113 27 1 1.9707 2.1206 -0.0006 28 1 5.6548 1.0754 -0.0143 29 1 4.3840 6.5624 -0.0119 30 1 0.7600 -2.5138 0.0110 31 1 2.0107 -2.6869 2.1452 32 1 3.4731 -3.1637 1.2494 33 1 2.2916 -5.1507 2.1463 34 1 0.8220 -4.6762 1.2616 35 1 3.5249 -5.3273 0.0019 36 1 2.0996 -6.3931 0.0089 37 1 2.2743 -5.1546 -2.1323 38 1 0.8118 -4.6783 -1.2368 39 1 3.4629 -3.1654 -1.2488 40 1 1.9933 -2.6909 -2.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291862687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:07 Heat of formation + Delta-G solvation = 16.763936 kcal Electronic energy + Delta-G solvation = -21462.438255 eV Core-core repulsion = 18277.839603 eV Total energy + Delta-G solvation = -3184.598652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67368 -38.40409 -37.22241 -33.70583 -32.51014 -31.80923 -31.25793 -30.93287 -28.01079 -26.39729 -26.26182 -22.73042 -22.72842 -21.27513 -19.90146 -19.48759 -18.74505 -17.13037 -16.23390 -15.56423 -15.32395 -14.83362 -14.66125 -14.30329 -14.17387 -13.96917 -13.43400 -12.98123 -12.83178 -12.81625 -12.54413 -12.37420 -12.21412 -11.85369 -11.71456 -11.31656 -11.27988 -11.27437 -11.08616 -10.74827 -10.60093 -10.49454 -10.39226 -10.29806 -9.72599 -9.46762 -8.88480 -7.81605 -7.66456 -7.07981 -6.30777 -4.77332 2.53221 2.95221 3.10581 3.17962 3.21707 3.72669 4.03281 4.42383 4.56490 4.59874 4.62257 4.78541 4.92248 5.06871 5.09432 5.20645 5.31924 5.33706 5.38758 5.43724 5.60274 5.73195 5.74795 5.83164 5.85052 5.86174 6.03346 6.06558 6.06771 6.17954 6.19218 6.41202 6.69015 6.78546 7.28381 7.37628 7.67434 7.82066 8.11868 8.22609 8.55528 8.89775 9.38522 10.44397 10.61805 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.003665 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.405068 B = 7638.805771 C = 8077.122330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.065 3.935 3 C -0.258 4.258 4 C 0.329 3.671 5 N -0.659 5.659 6 C 0.551 3.449 7 O -0.555 6.555 8 C -0.535 4.535 9 H 0.073 0.927 10 C 0.087 3.913 11 N -0.760 5.760 12 Si 0.914 3.086 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.263 1.263 16 N -0.357 5.357 17 N -0.380 5.380 18 C 0.177 3.823 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.172 0.828 28 H 0.395 0.605 29 H 0.272 0.728 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 -17.347 0.037 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.288 4.288 4 C 0.072 3.928 5 N -0.308 5.308 6 C 0.357 3.643 7 O -0.435 6.435 8 C -0.572 4.572 9 H 0.091 0.909 10 C -0.134 4.134 11 N -0.388 5.388 12 Si 0.738 3.262 13 H -0.196 1.196 14 H -0.203 1.203 15 H -0.187 1.187 16 N -0.189 5.189 17 N -0.165 5.165 18 C 0.074 3.926 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.189 0.811 28 H 0.228 0.772 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.600 -17.858 0.044 19.039 hybrid contribution 0.775 1.043 -0.010 1.300 sum -5.825 -16.815 0.034 17.795 Atomic orbital electron populations 1.20338 0.88380 1.02974 1.02570 1.21020 0.94141 0.87394 1.03414 1.21825 0.90481 1.00261 1.16266 1.19506 0.89558 0.88765 0.94946 1.43510 1.04726 1.06603 1.75917 1.18359 0.91068 0.77856 0.77033 1.90533 1.27024 1.72212 1.53734 1.20774 0.91961 0.90539 1.53913 0.90872 1.25728 0.96793 0.98366 0.92507 1.69986 1.22884 1.11991 1.33936 0.86261 0.81731 0.79227 0.78957 1.19595 1.20328 1.18750 1.77296 0.96277 1.09926 1.35399 1.47994 1.03103 1.04134 1.61238 1.21021 0.98182 0.77339 0.96047 1.21865 1.02670 0.94920 0.96990 1.21514 1.00711 0.94995 0.98142 1.21576 1.01137 0.98763 0.94477 1.21514 1.00675 0.95005 0.98167 1.21876 1.02728 0.94925 0.96984 0.90936 0.89884 0.92045 0.81094 0.77176 0.91766 0.89070 0.91676 0.90442 0.91573 0.91944 0.91683 0.91960 0.91575 0.91951 0.90432 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.94 36.01 0.36 -0.75 16 2 C 0.07 1.21 6.92 -82.26 -0.57 0.64 16 3 C -0.26 -5.95 9.51 -39.81 -0.38 -6.33 16 4 C 0.33 7.81 8.10 -154.67 -1.25 6.55 16 5 N -0.66 -16.21 5.43 -12.52 -0.07 -16.27 16 6 C 0.55 15.75 7.70 -13.10 -0.10 15.65 16 7 O -0.55 -17.39 12.13 5.13 0.06 -17.33 16 8 C -0.54 -14.86 9.53 -35.72 -0.34 -15.20 16 9 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 10 C 0.09 2.37 5.50 -17.35 -0.10 2.27 16 11 N -0.76 -22.06 11.82 55.55 0.66 -21.41 16 12 Si 0.91 19.66 29.56 -169.99 -5.02 14.64 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 16 N -0.36 -7.53 12.45 31.39 0.39 -7.14 16 17 N -0.38 -6.73 3.28 -50.70 -0.17 -6.89 16 18 C 0.18 2.30 2.91 -67.93 -0.20 2.10 16 19 C -0.13 -1.51 5.46 -26.73 -0.15 -1.65 16 20 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 22 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 23 C -0.13 -1.51 5.46 -26.73 -0.15 -1.66 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.65 7.09 -51.93 -0.37 0.29 16 27 H 0.17 4.42 5.90 -52.49 -0.31 4.11 16 28 H 0.40 8.62 8.80 -40.82 -0.36 8.26 16 29 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 30 H 0.09 1.00 6.66 -51.93 -0.35 0.66 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -33.45 327.08 -8.57 -42.01 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.00 Total: 9.36 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.34 Total: -1.89 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.81 Total: -51.72 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.06 Total: -17.33 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.45 -8.57 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291862687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.776 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds