Wall clock time and date at job start Mon Mar 30 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35172 * 126.04964 * 2 1 4 4 C 1.40521 * 107.87699 * 180.22957 * 3 2 1 5 5 N 1.39667 * 125.98877 * 179.79038 * 4 3 2 6 6 C 1.34780 * 120.00388 * 0.02562 * 5 4 3 7 7 O 1.21766 * 119.99578 * 359.97438 * 6 5 4 8 8 C 1.46108 * 120.00441 * 179.97438 * 6 5 4 9 9 H 1.07998 * 120.00325 * 0.02562 * 8 6 5 10 10 C 1.40131 * 120.00143 * 180.02562 * 8 6 5 11 11 N 1.30638 * 119.99824 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 120.00057 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47279 * 89.99846 * 12 10 8 14 14 H 1.48498 * 109.46868 * 210.00006 * 12 10 8 15 15 H 1.48503 * 109.46769 * 329.99711 * 12 10 8 16 16 N 1.31415 * 108.02025 * 359.77192 * 4 3 2 17 17 N 1.35064 * 126.04801 * 179.83473 * 2 1 3 18 18 C 1.46500 * 125.97232 * 0.03366 * 17 2 1 19 19 C 1.52997 * 109.47473 * 239.71529 * 18 17 2 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.09000 * 109.47237 * 270.16509 * 1 2 3 25 25 H 1.08998 * 109.47229 * 30.16542 * 1 2 3 26 26 H 1.09000 * 109.47064 * 150.16381 * 1 2 3 27 27 H 1.07993 * 126.06215 * 359.96026 * 3 2 1 28 28 H 0.96998 * 120.00253 * 179.97438 * 5 4 3 29 29 H 0.97000 * 120.00001 * 179.97438 * 11 10 8 30 30 H 1.08998 * 109.46845 * 359.72078 * 18 17 2 31 31 H 1.09002 * 109.47153 * 59.99757 * 19 18 17 32 32 H 1.09001 * 109.46832 * 299.99948 * 19 18 17 33 33 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 35 35 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 36 36 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 37 37 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 39 39 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 40 40 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3025 1.0929 0.0000 4 6 3.6376 0.6546 -0.0054 5 7 4.7698 1.4724 -0.0112 6 6 4.6328 2.8132 -0.0116 7 8 3.5218 3.3116 -0.0073 8 6 5.8172 3.6687 -0.0172 9 1 6.8026 3.2267 -0.0214 10 6 5.6747 5.0627 -0.0170 11 7 4.4827 5.5974 -0.0124 12 14 7.1890 6.1565 -0.0249 13 1 7.5835 6.4457 -1.4270 14 1 6.8838 7.4295 0.6762 15 1 8.3036 5.4636 0.6700 16 7 3.6341 -0.6595 -0.0035 17 7 2.3018 -1.0920 0.0031 18 6 1.8496 -2.4855 0.0065 19 6 2.3834 -3.1920 1.2541 20 6 1.9116 -4.6475 1.2572 21 6 2.4354 -5.3560 0.0064 22 6 1.9015 -4.6495 -1.2412 23 6 2.3733 -3.1941 -1.2444 24 1 -0.3634 0.0030 1.0276 25 1 -0.3633 0.8885 -0.5164 26 1 -0.3633 -0.8914 -0.5113 27 1 1.9707 2.1206 -0.0006 28 1 5.6548 1.0754 -0.0143 29 1 4.3840 6.5624 -0.0119 30 1 0.7600 -2.5138 0.0110 31 1 2.0107 -2.6869 2.1452 32 1 3.4731 -3.1637 1.2494 33 1 2.2916 -5.1507 2.1463 34 1 0.8220 -4.6762 1.2616 35 1 3.5249 -5.3273 0.0019 36 1 2.0996 -6.3931 0.0089 37 1 2.2743 -5.1546 -2.1323 38 1 0.8118 -4.6783 -1.2368 39 1 3.4629 -3.1654 -1.2488 40 1 1.9933 -2.6909 -2.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291862687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:06 Heat of formation + Delta-G solvation = -4.811589 kcal Electronic energy + Delta-G solvation = -21463.373840 eV Core-core repulsion = 18277.839603 eV Total energy + Delta-G solvation = -3185.534237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.23953 -39.74405 -38.91104 -35.53587 -34.58161 -33.08951 -32.79704 -31.76888 -29.49583 -28.22409 -27.79049 -24.08082 -23.56345 -22.85198 -21.25314 -20.96689 -20.26609 -19.03494 -17.73349 -17.35659 -16.90399 -16.27180 -15.99401 -15.76526 -15.18901 -15.10476 -14.75795 -14.74519 -14.47621 -13.90143 -13.78868 -13.59436 -13.29315 -13.20657 -13.18706 -12.99767 -12.77413 -12.72079 -12.26892 -12.10520 -12.01742 -11.55183 -11.54818 -11.44334 -11.24715 -11.00927 -10.85291 -9.85772 -9.46759 -8.87337 -8.37127 -6.95454 0.95351 1.40074 1.41825 1.52495 1.60066 1.89364 2.23424 2.53695 2.84779 3.51593 3.59070 3.71729 3.77995 3.98166 4.06297 4.19677 4.22617 4.29798 4.49003 4.52939 4.53340 4.61146 4.72773 4.89437 4.93196 5.05632 5.06991 5.12796 5.17067 5.19393 5.20386 5.24803 5.28030 5.34943 5.51796 5.52307 5.70763 6.09398 6.31547 6.37174 6.73369 6.80892 7.43101 8.33239 8.56666 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.003665 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.405068 B = 7638.805771 C = 8077.122330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.093 3.907 3 C -0.312 4.312 4 C 0.297 3.703 5 N -0.657 5.657 6 C 0.535 3.465 7 O -0.594 6.594 8 C -0.562 4.562 9 H 0.092 0.908 10 C 0.031 3.969 11 N -0.810 5.810 12 Si 1.005 2.995 13 H -0.260 1.260 14 H -0.270 1.270 15 H -0.249 1.249 16 N -0.363 5.363 17 N -0.364 5.364 18 C 0.162 3.838 19 C -0.122 4.122 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.123 4.123 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.135 0.865 28 H 0.405 0.595 29 H 0.279 0.721 30 H 0.127 0.873 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 -19.641 0.055 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 C -0.343 4.343 4 C 0.042 3.958 5 N -0.306 5.306 6 C 0.341 3.659 7 O -0.478 6.478 8 C -0.598 4.598 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.439 5.439 12 Si 0.824 3.176 13 H -0.185 1.185 14 H -0.194 1.194 15 H -0.173 1.173 16 N -0.195 5.195 17 N -0.149 5.149 18 C 0.062 3.938 19 C -0.161 4.161 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.162 4.162 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.153 0.847 28 H 0.239 0.761 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.312 -20.240 0.061 21.520 hybrid contribution 0.889 1.574 -0.015 1.808 sum -6.423 -18.666 0.046 19.740 Atomic orbital electron populations 1.20562 0.83994 1.04960 1.04587 1.21592 0.96455 0.86023 0.99437 1.21602 0.91403 1.00210 1.21129 1.19683 0.89503 0.89623 0.96995 1.43110 1.05708 1.05902 1.75858 1.18774 0.91052 0.79146 0.76900 1.90509 1.28298 1.73457 1.55535 1.21304 0.92483 0.91595 1.54437 0.88967 1.27011 1.00766 0.99749 0.91037 1.70137 1.26094 1.12920 1.34743 0.84907 0.76604 0.76587 0.79536 1.18470 1.19437 1.17268 1.77210 0.98800 1.08477 1.34989 1.48516 1.01841 1.06001 1.58520 1.21657 1.00224 0.74646 0.97244 1.21831 1.00943 0.97345 0.95965 1.21502 1.02027 0.92201 0.98841 1.21592 1.00392 0.99999 0.93932 1.21502 1.01997 0.92212 0.98864 1.21842 1.01003 0.97350 0.95958 0.88677 0.89706 0.88267 0.84733 0.76091 0.91059 0.85518 0.92369 0.93188 0.90669 0.89697 0.93074 0.89558 0.90670 0.89689 0.93186 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 9.94 71.24 0.71 -1.26 16 2 C 0.09 3.43 6.92 41.35 0.29 3.72 16 3 C -0.31 -15.31 9.51 22.12 0.21 -15.10 16 4 C 0.30 14.92 8.10 133.47 1.08 16.00 16 5 N -0.66 -34.38 5.43 -311.70 -1.69 -36.07 16 6 C 0.54 32.45 7.70 86.28 0.66 33.11 16 7 O -0.59 -39.96 12.13 -4.56 -0.06 -40.01 16 8 C -0.56 -32.28 9.53 24.77 0.24 -32.04 16 9 H 0.09 4.74 7.85 -2.91 -0.02 4.72 16 10 C 0.03 1.71 5.50 85.33 0.47 2.18 16 11 N -0.81 -48.87 11.82 21.85 0.26 -48.62 16 12 Si 1.01 40.56 29.56 68.60 2.03 42.59 16 13 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 14 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 15 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 16 N -0.36 -15.82 12.45 -54.59 -0.68 -16.50 16 17 N -0.36 -12.75 3.28 -314.32 -1.03 -13.78 16 18 C 0.16 3.84 2.91 44.99 0.13 3.98 16 19 C -0.12 -2.71 5.46 30.59 0.17 -2.54 16 20 C -0.11 -1.50 5.92 30.59 0.18 -1.32 16 21 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 22 C -0.11 -1.50 5.92 30.59 0.18 -1.32 16 23 C -0.12 -2.72 5.46 30.60 0.17 -2.55 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.10 1.64 7.09 -2.39 -0.02 1.62 16 27 H 0.13 7.60 5.90 -2.91 -0.02 7.58 16 28 H 0.40 18.72 8.80 -92.71 -0.82 17.90 16 29 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 30 H 0.13 2.18 6.66 -2.39 -0.02 2.16 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -79.57 327.08 3.72 -75.84 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.23 Total: 35.11 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 4.66 Total: 1.43 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -3.14 Total: -114.96 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.06 Total: -40.01 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -79.57 3.72 -75.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291862687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.032 kcal (2) G-P(sol) polarization free energy of solvation -79.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds