Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99877 * 2 1 4 4 N 1.46504 * 109.46773 * 125.00278 * 3 2 1 5 5 C 1.46499 * 120.00381 * 90.00257 * 4 3 2 6 6 C 1.50701 * 109.46992 * 269.99655 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 C 1.38546 * 119.99862 * 269.99974 * 4 3 2 15 15 C 1.39663 * 120.53245 * 184.72345 * 14 4 3 16 16 C 1.38073 * 118.33298 * 179.77736 * 15 14 4 17 17 C 1.50699 * 120.40162 * 180.23867 * 16 15 14 18 18 N 1.32580 * 119.20196 * 0.50049 * 16 15 14 19 19 C 1.31764 * 121.01140 * 359.73662 * 18 16 15 20 20 C 1.50693 * 119.08612 * 180.02562 * 19 18 16 21 21 O 1.42904 * 109.47215 * 269.97782 * 20 19 18 22 22 C 1.42901 * 114.00217 * 179.97438 * 21 20 19 23 23 N 1.31783 * 121.83163 * 0.02562 * 19 18 16 24 24 H 1.08002 * 119.99834 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00221 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00280 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.46915 * 5.00359 * 3 2 1 28 28 H 1.08994 * 109.47284 * 244.99622 * 3 2 1 29 29 H 1.09002 * 109.47391 * 149.99645 * 5 4 3 30 30 H 1.09001 * 109.46813 * 29.99701 * 5 4 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 32 32 H 1.07999 * 120.83216 * 0.02562 * 15 14 4 33 33 H 1.08996 * 109.47085 * 270.26168 * 17 16 15 34 34 H 1.08998 * 109.46753 * 30.26213 * 17 16 15 35 35 H 1.08997 * 109.47114 * 150.26421 * 17 16 15 36 36 H 1.09000 * 109.47342 * 29.98166 * 20 19 18 37 37 H 1.08999 * 109.47640 * 149.97994 * 20 19 18 38 38 H 1.09003 * 109.47140 * 300.00476 * 22 21 20 39 39 H 1.09000 * 109.46854 * 59.99919 * 22 21 20 40 40 H 1.08998 * 109.47310 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3590 0.8257 0.9695 6 6 4.3926 -0.6438 1.3018 7 1 3.4875 -1.1502 1.6032 8 6 5.5787 -1.3421 1.2202 9 7 6.6807 -0.7257 0.8528 10 14 5.6201 -3.1638 1.6316 11 1 4.2583 -3.6162 2.0136 12 1 6.0806 -3.9288 0.4449 13 1 6.5544 -3.3947 2.7625 14 6 2.5825 1.8359 2.3547 15 6 3.4867 1.9578 3.4121 16 6 3.0291 2.4701 4.6098 17 6 3.9659 2.6269 5.7798 18 7 1.7544 2.8175 4.7199 19 6 0.9247 2.6856 3.7048 20 6 -0.5153 3.0947 3.8776 21 8 -1.2753 1.9775 4.3428 22 6 -2.6620 2.2600 4.5412 23 7 1.3192 2.2058 2.5425 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 5.0284 1.3651 1.6395 30 1 4.6809 0.9725 -0.0615 31 1 7.5152 -1.2169 0.7958 32 1 4.5189 1.6626 3.2946 33 1 3.9596 1.7140 6.3752 34 1 4.9753 2.8154 5.4142 35 1 3.6403 3.4649 6.3962 36 1 -0.5782 3.9048 4.6042 37 1 -0.9144 3.4327 2.9213 38 1 -2.7691 3.0527 5.2817 39 1 -3.1058 2.5810 3.5988 40 1 -3.1688 1.3621 4.8947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291897179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = 29.054852 kcal Electronic energy + Delta-G solvation = -21680.460623 eV Core-core repulsion = 18496.394946 eV Total energy + Delta-G solvation = -3184.065678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42656 -37.75184 -36.86960 -33.69053 -33.39710 -32.69505 -30.90663 -28.53029 -27.92105 -27.27966 -25.70202 -24.96888 -23.28001 -21.44457 -20.45539 -19.26422 -17.26917 -16.65751 -16.49270 -16.31855 -15.42429 -15.30655 -14.73819 -14.69613 -14.38775 -13.97062 -13.64500 -13.28026 -13.02526 -12.54861 -12.40223 -12.32467 -12.18288 -11.97236 -11.72786 -11.38823 -11.35734 -11.03547 -10.86560 -10.75200 -10.32146 -10.11785 -9.83945 -9.66696 -9.56963 -8.99965 -8.92294 -8.60151 -8.53143 -7.10599 -6.18417 -4.26662 1.57309 2.02559 2.77484 3.20792 3.29505 3.34613 3.61421 3.90485 4.31955 4.46217 4.68948 4.79334 5.13210 5.23166 5.27628 5.34529 5.41745 5.50358 5.56235 5.62214 5.69375 5.74314 5.84974 5.87745 5.94860 6.12119 6.18524 6.23365 6.35411 6.46972 6.83043 6.99536 7.10203 7.15943 7.18101 7.31414 7.47998 7.75249 8.02552 8.12767 8.18396 8.78114 8.92918 9.40639 10.86465 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.005764 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.538046 B = 4856.483316 C = 5661.714045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.157 3.843 4 N -0.570 5.570 5 C 0.248 3.752 6 C -0.532 4.532 7 H 0.062 0.938 8 C 0.065 3.935 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.449 3.551 15 C -0.270 4.270 16 C 0.183 3.817 17 C -0.098 4.098 18 N -0.564 5.564 19 C 0.348 3.652 20 C 0.142 3.858 21 O -0.380 6.380 22 C 0.035 3.965 23 N -0.571 5.571 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.150 0.850 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 7.514 3.854 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.168 4.168 3 C 0.034 3.966 4 N -0.278 5.278 5 C 0.129 3.871 6 C -0.571 4.571 7 H 0.080 0.920 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.205 3.795 15 C -0.298 4.298 16 C 0.043 3.957 17 C -0.155 4.155 18 N -0.287 5.287 19 C 0.077 3.923 20 C 0.063 3.937 21 O -0.298 6.298 22 C -0.062 4.062 23 N -0.299 5.299 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.132 0.868 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.403 7.480 3.746 14.143 hybrid contribution 0.876 -1.327 -0.017 1.590 sum -10.527 6.153 3.729 12.751 Atomic orbital electron populations 1.23625 0.95834 1.00861 1.02731 1.23461 0.95893 0.99767 0.97704 1.20414 0.91958 0.95304 0.88969 1.47127 1.14256 1.60412 1.06013 1.19506 0.75128 0.94300 0.98206 1.21550 0.95034 0.94030 1.46464 0.91978 1.24924 0.95314 0.98688 0.94858 1.69925 0.99504 1.36478 1.47230 0.86470 0.78273 0.84807 0.78144 1.19724 1.20833 1.20767 1.18530 0.87792 0.86369 0.86856 1.22180 1.03065 1.10308 0.94287 1.21189 0.90619 0.90013 0.93900 1.20651 0.96978 1.02994 0.94907 1.67875 1.03884 1.24482 1.32449 1.21968 0.94853 0.91212 0.84302 1.20837 0.85089 0.88544 0.99191 1.87974 1.19668 1.34911 1.87210 1.22726 0.82041 1.01700 0.99751 1.67669 1.16148 1.20143 1.25907 0.89417 0.89014 0.86820 0.90615 0.90478 0.94256 0.94212 0.92568 0.83261 0.90314 0.90525 0.90753 0.91159 0.91229 0.94065 0.94007 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.13 14.32 29.01 0.42 -2.71 16 2 C -0.15 -2.75 9.85 -36.02 -0.35 -3.10 16 3 C 0.16 2.90 5.89 -5.19 -0.03 2.87 16 4 N -0.57 -12.15 2.54 -176.40 -0.45 -12.60 16 5 C 0.25 5.92 5.07 -5.19 -0.03 5.89 16 6 C -0.53 -13.96 9.28 -34.44 -0.32 -14.28 16 7 H 0.06 1.70 7.45 -52.49 -0.39 1.31 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 10 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.45 9.57 7.38 -154.78 -1.14 8.43 16 15 C -0.27 -5.53 9.00 -39.11 -0.35 -5.88 16 16 C 0.18 3.38 6.81 -82.33 -0.56 2.82 16 17 C -0.10 -1.38 10.21 36.01 0.37 -1.01 16 18 N -0.56 -10.74 10.27 -7.07 -0.07 -10.81 16 19 C 0.35 6.58 7.27 -157.23 -1.14 5.43 16 20 C 0.14 2.12 6.37 36.00 0.23 2.35 16 21 O -0.38 -5.98 10.69 -35.23 -0.38 -6.36 16 22 C 0.03 0.36 11.01 101.05 1.11 1.47 16 23 N -0.57 -11.57 9.21 -9.96 -0.09 -11.66 16 24 H 0.09 1.31 8.06 -52.49 -0.42 0.89 16 25 H 0.09 1.40 7.84 -52.49 -0.41 0.99 16 26 H 0.11 2.32 7.58 -52.48 -0.40 1.92 16 27 H 0.08 1.33 7.13 -51.93 -0.37 0.96 16 28 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 29 H 0.04 0.98 6.06 -51.93 -0.31 0.66 16 30 H 0.04 0.98 7.89 -51.93 -0.41 0.57 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.15 3.13 6.16 -52.49 -0.32 2.81 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -30.08 344.24 -7.95 -38.03 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.97 Total: 2.26 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.90 Total: 3.90 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.12 Total: -58.92 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.38 Total: -6.36 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.08 -7.95 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291897179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.086 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds