Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99877 * 2 1 4 4 N 1.46504 * 109.46773 * 125.00278 * 3 2 1 5 5 C 1.46499 * 120.00381 * 90.00257 * 4 3 2 6 6 C 1.50701 * 109.46992 * 269.99655 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47432 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46890 * 120.00210 * 10 8 6 13 13 H 1.48501 * 109.47062 * 240.00257 * 10 8 6 14 14 C 1.38546 * 119.99862 * 269.99974 * 4 3 2 15 15 C 1.39663 * 120.53245 * 184.72345 * 14 4 3 16 16 C 1.38073 * 118.33298 * 179.77736 * 15 14 4 17 17 C 1.50699 * 120.40162 * 180.23867 * 16 15 14 18 18 N 1.32580 * 119.20196 * 0.50049 * 16 15 14 19 19 C 1.31764 * 121.01140 * 359.73662 * 18 16 15 20 20 C 1.50693 * 119.08612 * 180.02562 * 19 18 16 21 21 O 1.42904 * 109.47215 * 269.97782 * 20 19 18 22 22 C 1.42901 * 114.00217 * 179.97438 * 21 20 19 23 23 N 1.31783 * 121.83163 * 0.02562 * 19 18 16 24 24 H 1.08002 * 119.99834 * 179.97438 * 1 2 3 25 25 H 1.07994 * 120.00221 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00280 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.46915 * 5.00359 * 3 2 1 28 28 H 1.08994 * 109.47284 * 244.99622 * 3 2 1 29 29 H 1.09002 * 109.47391 * 149.99645 * 5 4 3 30 30 H 1.09001 * 109.46813 * 29.99701 * 5 4 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 32 32 H 1.07999 * 120.83216 * 0.02562 * 15 14 4 33 33 H 1.08996 * 109.47085 * 270.26168 * 17 16 15 34 34 H 1.08998 * 109.46753 * 30.26213 * 17 16 15 35 35 H 1.08997 * 109.47114 * 150.26421 * 17 16 15 36 36 H 1.09000 * 109.47342 * 29.98166 * 20 19 18 37 37 H 1.08999 * 109.47640 * 149.97994 * 20 19 18 38 38 H 1.09003 * 109.47140 * 300.00476 * 22 21 20 39 39 H 1.09000 * 109.46854 * 59.99919 * 22 21 20 40 40 H 1.08998 * 109.47310 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3590 0.8257 0.9695 6 6 4.3926 -0.6438 1.3018 7 1 3.4875 -1.1502 1.6032 8 6 5.5787 -1.3421 1.2202 9 7 6.6807 -0.7257 0.8528 10 14 5.6201 -3.1638 1.6316 11 1 4.2583 -3.6162 2.0136 12 1 6.0806 -3.9288 0.4449 13 1 6.5544 -3.3947 2.7625 14 6 2.5825 1.8359 2.3547 15 6 3.4867 1.9578 3.4121 16 6 3.0291 2.4701 4.6098 17 6 3.9659 2.6269 5.7798 18 7 1.7544 2.8175 4.7199 19 6 0.9247 2.6856 3.7048 20 6 -0.5153 3.0947 3.8776 21 8 -1.2753 1.9775 4.3428 22 6 -2.6620 2.2600 4.5412 23 7 1.3192 2.2058 2.5425 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 5.0284 1.3651 1.6395 30 1 4.6809 0.9725 -0.0615 31 1 7.5152 -1.2169 0.7958 32 1 4.5189 1.6626 3.2946 33 1 3.9596 1.7140 6.3752 34 1 4.9753 2.8154 5.4142 35 1 3.6403 3.4649 6.3962 36 1 -0.5782 3.9048 4.6042 37 1 -0.9144 3.4327 2.9213 38 1 -2.7691 3.0527 5.2817 39 1 -3.1058 2.5810 3.5988 40 1 -3.1688 1.3621 4.8947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291897179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = 12.071795 kcal Electronic energy + Delta-G solvation = -21681.197064 eV Core-core repulsion = 18496.394946 eV Total energy + Delta-G solvation = -3184.802118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.91393 -38.95071 -38.34027 -35.28938 -34.92655 -34.41943 -32.46467 -29.71882 -29.55992 -28.74853 -26.76298 -26.44682 -25.11036 -22.82088 -22.03295 -20.72301 -18.81865 -18.54337 -17.98282 -17.50692 -16.68299 -16.58414 -16.38018 -16.19400 -15.88336 -15.38393 -15.25659 -14.77962 -14.35920 -14.10458 -13.80131 -13.58015 -13.44742 -13.23663 -13.17729 -13.01073 -12.73645 -12.62212 -12.49664 -12.28244 -12.10900 -11.69016 -11.44573 -11.40536 -10.66945 -10.64815 -10.50639 -10.34578 -10.04501 -8.79272 -8.19193 -6.37682 0.09546 0.48962 1.34547 1.35724 1.38088 1.48513 2.15538 2.38092 2.57926 3.05063 3.07190 3.34074 3.54927 3.86467 4.10650 4.17321 4.28277 4.34919 4.40835 4.48846 4.53276 4.58183 4.62759 4.64907 4.77850 4.78568 4.89026 4.89210 5.06479 5.09266 5.10439 5.14879 5.51495 5.63261 5.78355 5.88496 5.90316 6.02205 6.18634 6.48369 6.55813 6.76391 7.30797 7.40909 8.81330 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.005764 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.538046 B = 4856.483316 C = 5661.714045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.159 3.841 4 N -0.578 5.578 5 C 0.265 3.735 6 C -0.537 4.537 7 H 0.045 0.955 8 C 0.023 3.977 9 N -0.919 5.919 10 Si 0.954 3.046 11 H -0.278 1.278 12 H -0.274 1.274 13 H -0.275 1.275 14 C 0.431 3.569 15 C -0.296 4.296 16 C 0.186 3.814 17 C -0.095 4.095 18 N -0.569 5.569 19 C 0.337 3.663 20 C 0.145 3.855 21 O -0.414 6.414 22 C 0.029 3.971 23 N -0.577 5.577 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.268 0.732 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.570 7.796 4.820 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.036 3.964 4 N -0.286 5.286 5 C 0.144 3.856 6 C -0.576 4.576 7 H 0.064 0.936 8 C -0.177 4.177 9 N -0.558 5.558 10 Si 0.779 3.221 11 H -0.203 1.203 12 H -0.200 1.200 13 H -0.201 1.201 14 C 0.188 3.812 15 C -0.325 4.325 16 C 0.046 3.954 17 C -0.152 4.152 18 N -0.292 5.292 19 C 0.066 3.934 20 C 0.067 3.933 21 O -0.333 6.333 22 C -0.067 4.067 23 N -0.304 5.304 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.099 7.774 4.712 15.944 hybrid contribution 1.271 -1.371 -0.265 1.889 sum -11.828 6.403 4.447 14.166 Atomic orbital electron populations 1.23829 0.94918 1.02297 0.99193 1.23268 0.96704 0.98600 1.01032 1.20511 0.91775 0.95798 0.88290 1.47010 1.13733 1.60867 1.07024 1.19081 0.76654 0.93112 0.96769 1.21641 0.94451 0.95189 1.46308 0.93639 1.25586 0.95005 1.02328 0.94759 1.70001 0.99957 1.37910 1.47978 0.85574 0.77856 0.80422 0.78218 1.20287 1.19984 1.20090 1.18768 0.88661 0.86803 0.86944 1.22210 1.02526 1.12309 0.95422 1.21830 0.91136 0.88105 0.94353 1.20766 0.96613 1.04210 0.93600 1.68046 1.03989 1.24694 1.32439 1.22908 0.96738 0.89956 0.83771 1.20944 0.82801 0.88739 1.00801 1.87911 1.22156 1.35721 1.87507 1.22974 0.79530 1.02974 1.01225 1.67737 1.15374 1.20615 1.26713 0.87929 0.87405 0.89447 0.89438 0.90017 0.95625 0.95538 0.92244 0.84654 0.89303 0.89342 0.88821 0.89018 0.89603 0.92225 0.92475 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 14.32 67.78 0.97 -4.12 16 2 C -0.18 -6.55 9.85 25.65 0.25 -6.29 16 3 C 0.16 5.93 5.89 85.63 0.50 6.44 16 4 N -0.58 -25.32 2.54 -712.00 -1.81 -27.13 16 5 C 0.26 13.14 5.07 85.63 0.43 13.58 16 6 C -0.54 -29.03 9.28 25.60 0.24 -28.79 16 7 H 0.05 2.57 7.45 -2.91 -0.02 2.55 16 8 C 0.02 1.26 5.46 84.66 0.46 1.73 16 9 N -0.92 -51.34 13.29 21.45 0.28 -51.05 16 10 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.43 18.69 7.38 133.18 0.98 19.68 16 15 C -0.30 -12.38 9.00 22.58 0.20 -12.18 16 16 C 0.19 6.79 6.81 42.41 0.29 7.08 16 17 C -0.09 -2.52 10.21 71.24 0.73 -1.80 16 18 N -0.57 -20.97 10.27 -176.29 -1.81 -22.78 16 19 C 0.34 12.34 7.27 138.76 1.01 13.35 16 20 C 0.15 4.00 6.37 71.23 0.45 4.46 16 21 O -0.41 -12.15 10.69 -148.98 -1.59 -13.74 16 22 C 0.03 0.52 11.01 113.37 1.25 1.76 16 23 N -0.58 -23.09 9.21 -185.43 -1.71 -24.80 16 24 H 0.10 2.85 8.06 -2.91 -0.02 2.83 16 25 H 0.11 3.00 7.84 -2.91 -0.02 2.98 16 26 H 0.09 3.69 7.58 -2.91 -0.02 3.67 16 27 H 0.09 3.02 7.13 -2.39 -0.02 3.01 16 28 H 0.08 2.89 7.89 -2.39 -0.02 2.87 16 29 H 0.03 1.34 6.06 -2.39 -0.01 1.33 16 30 H 0.03 1.37 7.89 -2.39 -0.02 1.36 16 31 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.14 5.94 6.16 -2.91 -0.02 5.92 16 33 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 34 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -64.75 344.24 4.18 -60.56 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 1.02 Total: 18.72 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 7.77 Total: 14.88 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -5.04 Total: -125.76 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.59 Total: -13.74 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.75 4.18 -60.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291897179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.636 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds