Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50701 * 120.00060 * 2 1 4 4 N 1.46503 * 109.47114 * 125.00377 * 3 2 1 5 5 C 1.46496 * 120.00032 * 270.00127 * 4 3 2 6 6 C 1.50702 * 109.47287 * 270.00001 * 5 4 3 7 7 H 1.07999 * 119.99248 * 359.97438 * 6 5 4 8 8 C 1.37868 * 119.99927 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00353 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99867 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46918 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47133 * 120.00045 * 10 8 6 13 13 H 1.48507 * 109.47418 * 240.00239 * 10 8 6 14 14 C 1.34781 * 119.99940 * 89.99981 * 4 3 2 15 15 O 1.21279 * 119.99953 * 180.02562 * 14 4 3 16 16 C 1.50696 * 119.99928 * 0.02562 * 14 4 3 17 17 C 1.50702 * 109.46927 * 180.02562 * 16 14 4 18 18 C 1.39872 * 126.03842 * 264.97520 * 17 16 14 19 19 N 1.30828 * 108.20306 * 180.02562 * 18 17 16 20 20 N 1.40081 * 108.20591 * 359.78274 * 19 18 17 21 21 C 1.46503 * 126.03723 * 180.23447 * 20 19 18 22 22 C 1.34940 * 107.92509 * 0.36139 * 20 19 18 23 23 C 1.50706 * 126.13005 * 179.90777 * 22 20 19 24 24 H 1.08009 * 119.99940 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00214 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99940 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47407 * 5.00494 * 3 2 1 28 28 H 1.08999 * 109.47162 * 245.00266 * 3 2 1 29 29 H 1.09001 * 109.46888 * 30.00045 * 5 4 3 30 30 H 1.08996 * 109.47033 * 149.99601 * 5 4 3 31 31 H 0.97000 * 120.00353 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47023 * 60.00129 * 16 14 4 33 33 H 1.09000 * 109.47586 * 299.99999 * 16 14 4 34 34 H 1.08009 * 125.89832 * 359.97438 * 18 17 16 35 35 H 1.08999 * 109.47072 * 270.14685 * 21 20 19 36 36 H 1.08995 * 109.47552 * 30.15181 * 21 20 19 37 37 H 1.09005 * 109.47194 * 150.15115 * 21 20 19 38 38 H 1.08999 * 109.47015 * 269.69246 * 23 22 20 39 39 H 1.09000 * 109.46646 * 29.68398 * 23 22 20 40 40 H 1.09000 * 109.47248 * 149.69116 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8367 1.6368 8 6 2.5186 4.0665 3.6083 9 7 1.9583 3.4658 4.6354 10 14 2.8730 5.8993 3.6775 11 1 3.5028 6.3301 2.4036 12 1 1.6028 6.6418 3.8783 13 1 3.7958 6.1828 4.8060 14 6 4.2497 0.8661 0.9823 15 8 5.0198 0.8878 1.9190 16 6 4.6972 0.3184 -0.3484 17 6 6.1314 -0.1336 -0.2490 18 6 7.2575 0.6196 -0.5967 19 7 8.3212 -0.1084 -0.3726 20 7 7.9053 -1.3479 0.1303 21 6 8.7792 -2.4579 0.5179 22 6 6.5573 -1.3399 0.1919 23 6 5.6830 -2.4697 0.6719 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3586 2.1317 0.0897 28 1 2.6212 1.4026 -0.9314 29 1 1.4889 1.6965 2.5459 30 1 3.0990 1.3601 3.2258 31 1 1.7294 3.9744 5.4290 32 1 4.6125 1.0954 -1.1082 33 1 4.0681 -0.5283 -0.6230 34 1 7.2502 1.6278 -0.9842 35 1 8.9500 -3.1038 -0.3433 36 1 9.7321 -2.0639 0.8712 37 1 8.3058 -3.0321 1.3144 38 1 5.4218 -3.1101 -0.1705 39 1 6.2212 -3.0533 1.4188 40 1 4.7739 -2.0627 1.1146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292473190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = 61.492928 kcal Electronic energy + Delta-G solvation = -21595.776839 eV Core-core repulsion = 18413.117782 eV Total energy + Delta-G solvation = -3182.659057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15233 -38.82877 -35.56746 -33.58572 -33.16611 -32.60933 -31.98523 -29.65011 -27.47962 -26.61282 -25.62884 -25.02156 -22.59004 -20.72265 -19.98421 -19.33147 -18.14790 -16.55315 -16.30465 -16.23679 -15.45909 -15.35746 -14.72000 -14.41994 -14.21884 -13.89667 -13.60251 -13.24180 -12.96803 -12.68642 -12.56663 -12.34066 -12.26278 -12.18320 -11.89908 -11.59536 -11.39256 -11.21655 -10.97195 -10.83088 -10.56693 -10.34561 -10.13804 -9.56521 -9.15371 -9.06051 -8.84981 -8.39367 -8.01344 -7.59297 -5.99919 -4.04096 2.03786 2.48154 2.65683 2.99205 3.32560 3.40218 3.44069 3.57181 4.20197 4.49933 4.58884 4.77807 5.04608 5.11331 5.16713 5.22690 5.31921 5.33977 5.38979 5.43529 5.49190 5.53156 5.56902 5.73555 5.86296 5.94554 6.04579 6.11490 6.25151 6.39410 6.81559 6.84837 6.95340 7.15360 7.20642 7.51468 7.63896 7.90031 7.97653 8.29530 8.52030 8.97093 9.22681 9.61230 11.08169 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.005194 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.777678 B = 5389.208734 C = 6440.178335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.136 3.864 4 N -0.598 5.598 5 C 0.248 3.752 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.504 3.496 15 O -0.532 6.532 16 C -0.062 4.062 17 C -0.210 4.210 18 C 0.064 3.936 19 N -0.305 5.305 20 N -0.378 5.378 21 C 0.104 3.896 22 C 0.095 3.905 23 C -0.090 4.090 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.180 0.820 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -12.802 -12.524 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.185 4.185 3 C 0.012 3.988 4 N -0.329 5.329 5 C 0.129 3.871 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 C 0.291 3.709 15 O -0.408 6.408 16 C -0.103 4.103 17 C -0.222 4.222 18 C -0.121 4.121 19 N -0.126 5.126 20 N -0.161 5.161 21 C -0.037 4.037 22 C -0.032 4.032 23 C -0.148 4.148 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.197 0.803 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.556 -12.907 -11.815 18.359 hybrid contribution -0.773 1.111 0.255 1.377 sum 4.784 -11.796 -11.560 17.195 Atomic orbital electron populations 1.23806 0.95895 1.01687 1.00878 1.23441 0.96349 0.99108 0.99645 1.20573 0.93163 0.95158 0.89923 1.48240 1.10606 1.60698 1.13394 1.19227 0.95214 0.93686 0.79003 1.21496 1.40056 0.93438 1.01191 0.92410 1.24926 0.95142 0.98671 0.95387 1.69944 1.42350 1.36014 1.05200 0.86474 0.77857 0.85138 0.78143 1.19772 1.21017 1.20953 1.20414 0.82036 0.78684 0.89800 1.90672 1.52417 1.55756 1.41982 1.20019 0.92038 1.01344 0.96925 1.19233 0.95363 0.94240 1.13324 1.23667 0.89631 0.99487 0.99351 1.77278 1.23199 0.91525 1.20568 1.48238 1.04171 1.12494 1.51235 1.21748 0.94821 0.86487 1.00685 1.20693 0.84400 0.97797 1.00307 1.20430 0.98858 0.94597 1.00961 0.88330 0.88895 0.87853 0.89614 0.90689 0.95151 0.94080 0.92872 0.88852 0.89389 0.80295 0.91174 0.89524 0.89783 0.90494 0.91290 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.02 0.42 -1.90 16 2 C -0.17 -2.26 9.74 -36.02 -0.35 -2.61 16 3 C 0.14 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.60 -12.47 2.44 -176.43 -0.43 -12.90 16 5 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 6 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 10 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.50 10.40 7.66 -10.99 -0.08 10.32 16 15 O -0.53 -13.63 15.61 5.56 0.09 -13.54 16 16 C -0.06 -0.93 4.29 -29.04 -0.12 -1.06 16 17 C -0.21 -3.37 4.59 -105.05 -0.48 -3.86 16 18 C 0.06 1.05 11.96 -17.37 -0.21 0.84 16 19 N -0.31 -5.11 12.57 30.63 0.39 -4.72 16 20 N -0.38 -5.51 4.01 -63.88 -0.26 -5.77 16 21 C 0.10 0.99 11.27 59.85 0.67 1.66 16 22 C 0.10 1.40 6.93 -82.27 -0.57 0.83 16 23 C -0.09 -1.01 9.80 36.01 0.35 -0.66 16 24 H 0.10 1.23 7.84 -52.48 -0.41 0.82 16 25 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 26 H 0.10 1.28 7.83 -52.48 -0.41 0.87 16 27 H 0.09 1.43 7.72 -51.93 -0.40 1.03 16 28 H 0.07 0.97 6.44 -51.93 -0.33 0.64 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.09 1.22 7.40 -51.93 -0.38 0.83 16 33 H 0.09 1.08 7.65 -51.93 -0.40 0.69 16 34 H 0.18 2.47 8.06 -52.48 -0.42 2.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.64 7.05 -51.93 -0.37 0.27 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.66 7.07 -51.93 -0.37 0.30 16 40 H 0.09 1.09 7.89 -51.93 -0.41 0.68 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -36.46 344.06 -6.11 -42.57 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.95 Total: -0.32 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.85 Total: -1.44 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.43 Total: -49.58 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.46 -6.11 -42.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292473190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.064 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds