Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50701 * 120.00060 * 2 1 4 4 N 1.46503 * 109.47114 * 125.00377 * 3 2 1 5 5 C 1.46496 * 120.00032 * 270.00127 * 4 3 2 6 6 C 1.50702 * 109.47287 * 270.00001 * 5 4 3 7 7 H 1.07999 * 119.99248 * 359.97438 * 6 5 4 8 8 C 1.37868 * 119.99927 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00353 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99867 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46918 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47133 * 120.00045 * 10 8 6 13 13 H 1.48507 * 109.47418 * 240.00239 * 10 8 6 14 14 C 1.34781 * 119.99940 * 89.99981 * 4 3 2 15 15 O 1.21279 * 119.99953 * 180.02562 * 14 4 3 16 16 C 1.50696 * 119.99928 * 0.02562 * 14 4 3 17 17 C 1.50702 * 109.46927 * 180.02562 * 16 14 4 18 18 C 1.39872 * 126.03842 * 264.97520 * 17 16 14 19 19 N 1.30828 * 108.20306 * 180.02562 * 18 17 16 20 20 N 1.40081 * 108.20591 * 359.78274 * 19 18 17 21 21 C 1.46503 * 126.03723 * 180.23447 * 20 19 18 22 22 C 1.34940 * 107.92509 * 0.36139 * 20 19 18 23 23 C 1.50706 * 126.13005 * 179.90777 * 22 20 19 24 24 H 1.08009 * 119.99940 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00214 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99940 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47407 * 5.00494 * 3 2 1 28 28 H 1.08999 * 109.47162 * 245.00266 * 3 2 1 29 29 H 1.09001 * 109.46888 * 30.00045 * 5 4 3 30 30 H 1.08996 * 109.47033 * 149.99601 * 5 4 3 31 31 H 0.97000 * 120.00353 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47023 * 60.00129 * 16 14 4 33 33 H 1.09000 * 109.47586 * 299.99999 * 16 14 4 34 34 H 1.08009 * 125.89832 * 359.97438 * 18 17 16 35 35 H 1.08999 * 109.47072 * 270.14685 * 21 20 19 36 36 H 1.08995 * 109.47552 * 30.15181 * 21 20 19 37 37 H 1.09005 * 109.47194 * 150.15115 * 21 20 19 38 38 H 1.08999 * 109.47015 * 269.69246 * 23 22 20 39 39 H 1.09000 * 109.46646 * 29.68398 * 23 22 20 40 40 H 1.09000 * 109.47248 * 149.69116 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8367 1.6368 8 6 2.5186 4.0665 3.6083 9 7 1.9583 3.4658 4.6354 10 14 2.8730 5.8993 3.6775 11 1 3.5028 6.3301 2.4036 12 1 1.6028 6.6418 3.8783 13 1 3.7958 6.1828 4.8060 14 6 4.2497 0.8661 0.9823 15 8 5.0198 0.8878 1.9190 16 6 4.6972 0.3184 -0.3484 17 6 6.1314 -0.1336 -0.2490 18 6 7.2575 0.6196 -0.5967 19 7 8.3212 -0.1084 -0.3726 20 7 7.9053 -1.3479 0.1303 21 6 8.7792 -2.4579 0.5179 22 6 6.5573 -1.3399 0.1919 23 6 5.6830 -2.4697 0.6719 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3586 2.1317 0.0897 28 1 2.6212 1.4026 -0.9314 29 1 1.4889 1.6965 2.5459 30 1 3.0990 1.3601 3.2258 31 1 1.7294 3.9744 5.4290 32 1 4.6125 1.0954 -1.1082 33 1 4.0681 -0.5283 -0.6230 34 1 7.2502 1.6278 -0.9842 35 1 8.9500 -3.1038 -0.3433 36 1 9.7321 -2.0639 0.8712 37 1 8.3058 -3.0321 1.3144 38 1 5.4218 -3.1101 -0.1705 39 1 6.2212 -3.0533 1.4188 40 1 4.7739 -2.0627 1.1146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292473190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = 37.468122 kcal Electronic energy + Delta-G solvation = -21596.818632 eV Core-core repulsion = 18413.117782 eV Total energy + Delta-G solvation = -3183.700851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.26952 -40.43456 -37.09944 -35.15835 -34.52950 -33.76372 -33.57384 -30.90259 -29.22352 -27.55637 -26.87846 -26.50593 -24.48272 -21.86625 -21.17001 -20.47399 -19.59559 -18.60032 -17.76693 -17.50490 -17.02954 -16.40983 -16.25853 -16.06916 -15.41256 -15.15340 -14.79536 -14.39646 -14.22605 -14.06566 -13.83682 -13.72474 -13.41441 -13.26012 -13.10642 -12.98378 -12.87878 -12.79977 -12.59816 -12.51558 -12.20629 -12.10855 -11.61158 -11.49821 -10.63277 -10.53494 -10.23269 -10.13286 -9.36610 -9.17434 -8.20126 -6.34351 0.94011 1.35930 1.38726 1.41247 1.50580 1.69978 1.79341 1.99359 2.38226 2.71820 3.09373 3.64540 3.82262 3.96305 4.14196 4.19377 4.30631 4.36977 4.37949 4.42121 4.45879 4.58072 4.63641 4.73619 4.77774 4.94213 5.01297 5.06427 5.10008 5.14967 5.27042 5.30548 5.58383 5.72572 5.78671 5.83314 6.04809 6.11523 6.20165 6.74887 6.76488 6.90724 7.32470 7.63129 8.86856 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.005194 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.777678 B = 5389.208734 C = 6440.178335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 C 0.131 3.869 4 N -0.601 5.601 5 C 0.266 3.734 6 C -0.539 4.539 7 H 0.053 0.947 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.268 1.268 13 H -0.284 1.284 14 C 0.499 3.501 15 O -0.592 6.592 16 C -0.043 4.043 17 C -0.241 4.241 18 C 0.048 3.952 19 N -0.337 5.337 20 N -0.381 5.381 21 C 0.092 3.908 22 C 0.093 3.907 23 C -0.088 4.088 24 H 0.094 0.906 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.019 0.981 30 H -0.007 1.007 31 H 0.266 0.734 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.191 0.809 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 -13.695 -14.302 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.198 4.198 3 C 0.009 3.991 4 N -0.332 5.332 5 C 0.144 3.856 6 C -0.577 4.577 7 H 0.071 0.929 8 C -0.191 4.191 9 N -0.570 5.570 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.193 1.193 13 H -0.210 1.210 14 C 0.289 3.711 15 O -0.473 6.473 16 C -0.084 4.084 17 C -0.252 4.252 18 C -0.137 4.137 19 N -0.159 5.159 20 N -0.164 5.164 21 C -0.048 4.048 22 C -0.035 4.035 23 C -0.146 4.146 24 H 0.113 0.887 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.037 0.963 30 H 0.011 0.989 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.208 0.792 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.193 -13.817 -13.648 20.103 hybrid contribution -0.671 1.304 0.836 1.688 sum 4.522 -12.514 -12.812 18.471 Atomic orbital electron populations 1.24027 0.95717 1.02675 0.98894 1.23364 0.96663 0.98460 1.01336 1.20843 0.92717 0.96244 0.89259 1.48226 1.11911 1.60232 1.12821 1.18621 0.93608 0.92497 0.80837 1.21777 1.40038 0.94652 1.01280 0.92861 1.25828 0.94783 1.03575 0.94944 1.70060 1.43137 1.37953 1.05815 0.85415 0.78186 0.79372 0.78128 1.19059 1.19330 1.21032 1.21443 0.80995 0.77440 0.91260 1.90635 1.53985 1.58178 1.44504 1.19960 0.92079 1.02903 0.93442 1.19478 0.95659 0.95090 1.14978 1.24000 0.89917 1.00213 0.99599 1.77193 1.23937 0.92869 1.21859 1.48649 1.04817 1.12641 1.50314 1.22147 0.94435 0.85665 1.02508 1.21278 0.84927 0.98442 0.98895 1.20542 0.97586 0.93942 1.02540 0.88728 0.86584 0.86183 0.90935 0.87230 0.96303 0.98869 0.92534 0.86465 0.86028 0.79187 0.88651 0.89450 0.87696 0.87119 0.89731 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 14.32 67.79 0.97 -3.04 16 2 C -0.18 -4.49 9.74 25.65 0.25 -4.24 16 3 C 0.13 3.98 5.65 85.63 0.48 4.47 16 4 N -0.60 -25.29 2.44 -830.50 -2.03 -27.31 16 5 C 0.27 14.53 5.16 85.63 0.44 14.97 16 6 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -57.15 13.29 21.44 0.28 -56.86 16 10 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 14 C 0.50 20.69 7.66 87.66 0.67 21.36 16 15 O -0.59 -31.45 15.61 -3.03 -0.05 -31.50 16 16 C -0.04 -1.22 4.29 29.10 0.12 -1.10 16 17 C -0.24 -7.48 4.59 -20.14 -0.09 -7.58 16 18 C 0.05 1.54 11.96 85.24 1.02 2.56 16 19 N -0.34 -11.23 12.57 -57.02 -0.72 -11.94 16 20 N -0.38 -10.65 4.01 -356.03 -1.43 -12.08 16 21 C 0.09 1.57 11.27 127.77 1.44 3.01 16 22 C 0.09 2.61 6.93 41.41 0.29 2.89 16 23 C -0.09 -1.76 9.80 71.24 0.70 -1.06 16 24 H 0.09 2.23 7.84 -2.91 -0.02 2.20 16 25 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 26 H 0.12 2.62 7.83 -2.91 -0.02 2.59 16 27 H 0.07 2.38 7.72 -2.39 -0.02 2.36 16 28 H 0.11 2.53 6.44 -2.39 -0.02 2.51 16 29 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 30 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.12 2.74 7.40 -2.39 -0.02 2.72 16 33 H 0.12 2.59 7.65 -2.39 -0.02 2.57 16 34 H 0.19 5.27 8.06 -2.91 -0.02 5.25 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.32 7.05 -2.38 -0.02 1.31 16 38 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.41 7.07 -2.39 -0.02 1.39 16 40 H 0.07 1.66 7.89 -2.39 -0.02 1.64 16 Total: -1.00 -82.92 344.06 6.11 -76.81 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.02 Total: 13.24 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 7.00 Total: 1.83 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.89 Total: -108.20 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.05 Total: -31.50 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -82.92 6.11 -76.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292473190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.279 kcal (2) G-P(sol) polarization free energy of solvation -82.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds