Wall clock time and date at job start Mon Mar 30 2020 02:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00315 * 2 1 4 4 N 1.46492 * 109.47397 * 125.00292 * 3 2 1 5 5 C 1.46506 * 119.99800 * 269.99750 * 4 3 2 6 6 C 1.50699 * 109.47352 * 269.99857 * 5 4 3 7 7 H 1.08000 * 119.99828 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00146 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46988 * 90.00142 * 10 8 6 12 12 H 1.48502 * 109.47218 * 209.99962 * 10 8 6 13 13 H 1.48501 * 109.47118 * 330.00116 * 10 8 6 14 14 C 1.34773 * 120.00231 * 90.00207 * 4 3 2 15 15 O 1.21283 * 120.00360 * 179.72577 * 14 4 3 16 16 C 1.50706 * 120.00081 * 359.97438 * 14 4 3 17 17 C 1.50696 * 109.47259 * 179.72770 * 16 14 4 18 18 C 1.39872 * 126.04010 * 90.02720 * 17 16 14 19 19 C 1.50700 * 125.90145 * 359.97438 * 18 17 16 20 20 N 1.30837 * 108.20001 * 179.97438 * 18 17 16 21 21 N 1.40082 * 108.20971 * 359.97438 * 20 18 17 22 22 H 0.96996 * 126.04424 * 180.02562 * 21 20 18 23 23 C 1.34954 * 107.92339 * 359.76006 * 21 20 18 24 24 C 1.50697 * 126.12915 * 180.24079 * 23 21 20 25 25 H 1.07993 * 120.00495 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00090 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47260 * 4.99602 * 3 2 1 29 29 H 1.09006 * 109.47035 * 245.00356 * 3 2 1 30 30 H 1.08995 * 109.47161 * 30.00561 * 5 4 3 31 31 H 1.09002 * 109.46900 * 149.99872 * 5 4 3 32 32 H 0.97007 * 120.00044 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46564 * 299.73030 * 16 14 4 34 34 H 1.08998 * 109.47012 * 59.72084 * 16 14 4 35 35 H 1.09000 * 109.47029 * 89.99907 * 19 18 17 36 36 H 1.08989 * 109.47340 * 210.00673 * 19 18 17 37 37 H 1.09001 * 109.46616 * 330.00500 * 19 18 17 38 38 H 1.08998 * 109.47226 * 270.18250 * 24 23 21 39 39 H 1.09001 * 109.46848 * 30.17412 * 24 23 21 40 40 H 1.09000 * 109.47197 * 150.17395 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3436 2.4803 7 1 3.3035 3.8370 1.6364 8 6 2.5187 4.0668 3.6080 9 7 1.9592 3.4660 4.6355 10 14 2.8719 5.8998 3.6766 11 1 1.6989 6.6496 3.1596 12 1 3.1355 6.3009 5.0819 13 1 4.0619 6.2061 2.8428 14 6 4.2497 0.8661 0.9822 15 8 5.0215 0.8929 1.9175 16 6 4.6969 0.3173 -0.3482 17 6 6.1334 -0.1277 -0.2508 18 6 6.5769 -1.4033 0.1132 19 6 5.6998 -2.5734 0.4773 20 7 7.8850 -1.4052 0.0830 21 7 8.3158 -0.1292 -0.3023 22 1 9.2374 0.1544 -0.4078 23 6 7.2219 0.6343 -0.5067 24 6 7.2142 2.0781 -0.9385 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0895 29 1 2.6213 1.4025 -0.9315 30 1 1.4889 1.6967 2.5459 31 1 3.0991 1.3603 3.2259 32 1 1.7297 3.9748 5.4289 33 1 4.0708 -0.5327 -0.6194 34 1 4.6073 1.0921 -1.1095 35 1 5.4651 -3.1448 -0.4207 36 1 6.2232 -3.2124 1.1883 37 1 4.7765 -2.2089 0.9277 38 1 7.2372 2.7207 -0.0583 39 1 8.0897 2.2772 -1.5565 40 1 6.3103 2.2808 -1.5128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292513808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:51 Heat of formation + Delta-G solvation = 48.503716 kcal Electronic energy + Delta-G solvation = -21796.059435 eV Core-core repulsion = 18612.837123 eV Total energy + Delta-G solvation = -3183.222312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20083 -38.81992 -35.56085 -33.35157 -33.18585 -32.60151 -31.97483 -29.27772 -27.75793 -27.22812 -25.87117 -25.17298 -22.63845 -20.09729 -19.95448 -19.34946 -18.12079 -17.11557 -16.49588 -16.23595 -15.42986 -14.79251 -14.73923 -14.40700 -14.12912 -13.67692 -13.30357 -13.19075 -12.96858 -12.70523 -12.46851 -12.27927 -12.22784 -12.12706 -11.76453 -11.59667 -11.47658 -11.19001 -10.94200 -10.86650 -10.56996 -10.31449 -10.15767 -9.60020 -9.14708 -9.04658 -8.86261 -8.40764 -8.08778 -7.59994 -6.01238 -4.05683 2.04731 2.49072 2.88745 3.01918 3.30326 3.37144 3.40454 3.56430 4.18841 4.47757 4.78269 4.83743 5.10712 5.18775 5.32013 5.33709 5.39485 5.46128 5.47533 5.53149 5.66323 5.70094 5.76449 5.86651 5.94321 6.05057 6.06800 6.16479 6.23968 6.38247 6.83058 6.84968 6.96149 7.17069 7.45946 7.51380 7.62780 7.88305 7.96108 8.28071 8.51491 8.95093 9.22017 9.59367 11.06813 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.005782 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.672840 B = 4841.417598 C = 5913.397557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.597 5.597 5 C 0.248 3.752 6 C -0.523 4.523 7 H 0.056 0.944 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.505 3.495 15 O -0.531 6.531 16 C -0.063 4.063 17 C -0.207 4.207 18 C 0.094 3.906 19 C -0.073 4.073 20 N -0.303 5.303 21 N -0.480 5.480 22 H 0.434 0.566 23 C 0.100 3.900 24 C -0.094 4.094 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.999 -7.028 -14.592 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.012 3.988 4 N -0.329 5.329 5 C 0.129 3.871 6 C -0.562 4.562 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.291 3.709 15 O -0.407 6.407 16 C -0.104 4.104 17 C -0.219 4.219 18 C -0.073 4.073 19 C -0.132 4.132 20 N -0.127 5.127 21 N -0.188 5.188 22 H 0.278 0.722 23 C -0.029 4.029 24 C -0.152 4.152 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.386 -7.656 -13.688 16.582 hybrid contribution -0.135 1.723 0.030 1.729 sum 5.251 -5.933 -13.658 15.790 Atomic orbital electron populations 1.23804 0.95890 1.01684 1.00860 1.23449 0.96367 0.99141 0.99650 1.20567 0.93143 0.95210 0.89859 1.48233 1.10609 1.60677 1.13402 1.19227 0.95255 0.93624 0.79015 1.21438 1.40257 0.93422 1.01110 0.92530 1.24931 0.95197 0.98614 0.95399 1.69938 1.42202 1.36049 1.05201 0.86534 0.78535 0.85237 0.77312 1.20665 1.21158 1.19972 1.20382 0.82096 0.78637 0.89743 1.90673 1.52393 1.55663 1.42003 1.20022 0.92201 1.01354 0.96844 1.19102 0.94432 0.93845 1.14495 1.22097 0.91466 0.95824 0.97908 1.20169 0.97786 0.93621 1.01644 1.77184 1.12510 0.99000 1.23973 1.45989 1.07795 1.08690 1.56301 0.72241 1.20770 0.87369 0.94502 1.00233 1.20474 1.03339 0.89102 1.02302 0.88861 0.88368 0.87749 0.89627 0.90803 0.95142 0.94036 0.92789 0.89072 0.89228 0.90725 0.90961 0.90394 0.89598 0.91425 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.02 0.42 -1.91 16 2 C -0.17 -2.28 9.75 -36.03 -0.35 -2.63 16 3 C 0.14 2.13 5.65 -5.20 -0.03 2.10 16 4 N -0.60 -12.36 2.44 -176.43 -0.43 -12.79 16 5 C 0.25 6.47 5.16 -5.19 -0.03 6.45 16 6 C -0.52 -14.73 9.39 -34.44 -0.32 -15.05 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 10 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.51 10.35 7.66 -10.98 -0.08 10.26 16 15 O -0.53 -13.54 15.62 5.56 0.09 -13.45 16 16 C -0.06 -0.94 4.20 -29.03 -0.12 -1.06 16 17 C -0.21 -3.31 4.59 -105.05 -0.48 -3.79 16 18 C 0.09 1.50 7.22 -82.40 -0.59 0.91 16 19 C -0.07 -0.95 10.12 36.01 0.36 -0.58 16 20 N -0.30 -4.95 12.70 33.67 0.43 -4.53 16 21 N -0.48 -6.69 7.36 33.48 0.25 -6.44 16 22 H 0.43 4.47 8.96 -182.62 -1.64 2.84 16 23 C 0.10 1.45 7.21 -82.26 -0.59 0.85 16 24 C -0.09 -1.07 10.22 36.00 0.37 -0.71 16 25 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.10 1.23 7.84 -52.48 -0.41 0.81 16 27 H 0.10 1.32 7.83 -52.49 -0.41 0.91 16 28 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 29 H 0.07 0.94 6.43 -51.93 -0.33 0.60 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.24 7.43 -51.93 -0.39 0.85 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.09 1.15 7.57 -51.93 -0.39 0.75 16 34 H 0.09 1.14 6.38 -51.93 -0.33 0.80 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.90 8.14 -51.94 -0.42 0.47 16 37 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.89 7.14 -51.93 -0.37 0.52 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -35.67 343.25 -7.50 -43.17 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.16 Total: 1.62 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.56 Total: -3.53 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.98 Total: -49.75 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.67 -7.50 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292513808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.673 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds