Wall clock time and date at job start Mon Mar 30 2020 02:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00315 * 2 1 4 4 N 1.46492 * 109.47397 * 125.00292 * 3 2 1 5 5 C 1.46506 * 119.99800 * 269.99750 * 4 3 2 6 6 C 1.50699 * 109.47352 * 269.99857 * 5 4 3 7 7 H 1.08000 * 119.99828 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00146 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46988 * 90.00142 * 10 8 6 12 12 H 1.48502 * 109.47218 * 209.99962 * 10 8 6 13 13 H 1.48501 * 109.47118 * 330.00116 * 10 8 6 14 14 C 1.34773 * 120.00231 * 90.00207 * 4 3 2 15 15 O 1.21283 * 120.00360 * 179.72577 * 14 4 3 16 16 C 1.50706 * 120.00081 * 359.97438 * 14 4 3 17 17 C 1.50696 * 109.47259 * 179.72770 * 16 14 4 18 18 C 1.39872 * 126.04010 * 90.02720 * 17 16 14 19 19 C 1.50700 * 125.90145 * 359.97438 * 18 17 16 20 20 N 1.30837 * 108.20001 * 179.97438 * 18 17 16 21 21 N 1.40082 * 108.20971 * 359.97438 * 20 18 17 22 22 H 0.96996 * 126.04424 * 180.02562 * 21 20 18 23 23 C 1.34954 * 107.92339 * 359.76006 * 21 20 18 24 24 C 1.50697 * 126.12915 * 180.24079 * 23 21 20 25 25 H 1.07993 * 120.00495 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00090 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47260 * 4.99602 * 3 2 1 29 29 H 1.09006 * 109.47035 * 245.00356 * 3 2 1 30 30 H 1.08995 * 109.47161 * 30.00561 * 5 4 3 31 31 H 1.09002 * 109.46900 * 149.99872 * 5 4 3 32 32 H 0.97007 * 120.00044 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46564 * 299.73030 * 16 14 4 34 34 H 1.08998 * 109.47012 * 59.72084 * 16 14 4 35 35 H 1.09000 * 109.47029 * 89.99907 * 19 18 17 36 36 H 1.08989 * 109.47340 * 210.00673 * 19 18 17 37 37 H 1.09001 * 109.46616 * 330.00500 * 19 18 17 38 38 H 1.08998 * 109.47226 * 270.18250 * 24 23 21 39 39 H 1.09001 * 109.46848 * 30.17412 * 24 23 21 40 40 H 1.09000 * 109.47197 * 150.17395 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3436 2.4803 7 1 3.3035 3.8370 1.6364 8 6 2.5187 4.0668 3.6080 9 7 1.9592 3.4660 4.6355 10 14 2.8719 5.8998 3.6766 11 1 1.6989 6.6496 3.1596 12 1 3.1355 6.3009 5.0819 13 1 4.0619 6.2061 2.8428 14 6 4.2497 0.8661 0.9822 15 8 5.0215 0.8929 1.9175 16 6 4.6969 0.3173 -0.3482 17 6 6.1334 -0.1277 -0.2508 18 6 6.5769 -1.4033 0.1132 19 6 5.6998 -2.5734 0.4773 20 7 7.8850 -1.4052 0.0830 21 7 8.3158 -0.1292 -0.3023 22 1 9.2374 0.1544 -0.4078 23 6 7.2219 0.6343 -0.5067 24 6 7.2142 2.0781 -0.9385 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0895 29 1 2.6213 1.4025 -0.9315 30 1 1.4889 1.6967 2.5459 31 1 3.0991 1.3603 3.2259 32 1 1.7297 3.9748 5.4289 33 1 4.0708 -0.5327 -0.6194 34 1 4.6073 1.0921 -1.1095 35 1 5.4651 -3.1448 -0.4207 36 1 6.2232 -3.2124 1.1883 37 1 4.7765 -2.2089 0.9277 38 1 7.2372 2.7207 -0.0583 39 1 8.0897 2.2772 -1.5565 40 1 6.3103 2.2808 -1.5128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292513808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:50 Heat of formation + Delta-G solvation = 24.626140 kcal Electronic energy + Delta-G solvation = -21797.094844 eV Core-core repulsion = 18612.837123 eV Total energy + Delta-G solvation = -3184.257721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33312 -40.41840 -37.08784 -35.13280 -34.34586 -33.82727 -33.56335 -30.57988 -29.28360 -28.45432 -27.07665 -26.68493 -24.54959 -21.32075 -21.08341 -20.53882 -19.54071 -18.58716 -18.24566 -17.75836 -17.09064 -16.18785 -16.16440 -15.92053 -15.45123 -14.88421 -14.48259 -14.30391 -14.15571 -14.09932 -13.99454 -13.86427 -13.30171 -13.22739 -13.09963 -12.94310 -12.87241 -12.76533 -12.56689 -12.49640 -12.19901 -12.09336 -11.62999 -11.45031 -10.61350 -10.54529 -10.22810 -10.14290 -9.36074 -9.27098 -8.18567 -6.33086 0.92523 1.37236 1.40495 1.41534 1.50554 1.70501 1.99897 2.01322 2.38953 2.71635 3.10962 3.73862 3.77852 3.96190 4.18141 4.19939 4.24534 4.36538 4.45135 4.52993 4.61741 4.66823 4.78191 4.80758 4.94027 4.98832 5.07125 5.09504 5.11360 5.15788 5.29213 5.30801 5.59222 5.75466 5.79806 5.83826 6.05301 6.12316 6.47452 6.75926 6.76610 6.91458 7.33615 7.63974 8.88404 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.005782 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.672840 B = 4841.417598 C = 5913.397557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 C 0.132 3.868 4 N -0.601 5.601 5 C 0.265 3.735 6 C -0.537 4.537 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.966 3.034 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.500 3.500 15 O -0.592 6.592 16 C -0.045 4.045 17 C -0.238 4.238 18 C 0.078 3.922 19 C -0.072 4.072 20 N -0.332 5.332 21 N -0.474 5.474 22 H 0.448 0.552 23 C 0.100 3.900 24 C -0.093 4.093 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.018 0.982 31 H -0.009 1.009 32 H 0.265 0.735 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 -6.430 -17.120 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.200 4.200 3 C 0.010 3.990 4 N -0.331 5.331 5 C 0.144 3.856 6 C -0.575 4.575 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.211 1.211 13 H -0.195 1.195 14 C 0.290 3.710 15 O -0.473 6.473 16 C -0.086 4.086 17 C -0.249 4.249 18 C -0.088 4.088 19 C -0.131 4.131 20 N -0.156 5.156 21 N -0.184 5.184 22 H 0.294 0.706 23 C -0.030 4.030 24 C -0.151 4.151 25 H 0.133 0.867 26 H 0.114 0.886 27 H 0.136 0.864 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.036 0.964 31 H 0.009 0.991 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.229 -7.071 -16.274 18.499 hybrid contribution -0.100 1.505 0.825 1.719 sum 5.129 -5.566 -15.449 17.203 Atomic orbital electron populations 1.24022 0.95708 1.02667 0.98877 1.23385 0.96711 0.98569 1.01355 1.20844 0.92737 0.96138 0.89275 1.48213 1.11890 1.60201 1.12814 1.18624 0.93540 0.92643 0.80802 1.21732 1.40089 0.94432 1.01279 0.92518 1.25870 0.94840 1.03688 0.94942 1.70071 1.43180 1.38032 1.05853 0.85441 0.78960 0.79273 0.77297 1.18749 1.21060 1.19484 1.21392 0.81074 0.77374 0.91183 1.90640 1.54004 1.58074 1.44536 1.19973 0.92134 1.02910 0.93576 1.19372 0.95230 0.94295 1.16016 1.22601 0.91741 0.96904 0.97557 1.20249 0.96858 0.93053 1.02942 1.77118 1.12950 1.00383 1.25183 1.46054 1.08632 1.08102 1.55566 0.70647 1.21287 0.87181 0.95579 0.98919 1.20580 1.05769 0.86602 1.02132 0.86728 0.88600 0.86395 0.90764 0.87074 0.96443 0.99078 0.92595 0.86205 0.86210 0.87738 0.91084 0.91143 0.91427 0.88074 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 14.32 67.78 0.97 -3.06 16 2 C -0.18 -4.57 9.75 25.65 0.25 -4.32 16 3 C 0.13 3.92 5.65 85.63 0.48 4.40 16 4 N -0.60 -24.90 2.44 -830.51 -2.03 -26.93 16 5 C 0.27 14.40 5.16 85.63 0.44 14.84 16 6 C -0.54 -30.80 9.39 25.60 0.24 -30.55 16 7 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 8 C 0.01 0.29 5.46 84.65 0.46 0.76 16 9 N -0.93 -57.02 13.29 21.44 0.28 -56.74 16 10 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 11 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 C 0.50 20.48 7.66 87.66 0.67 21.15 16 15 O -0.59 -31.23 15.62 -3.04 -0.05 -31.27 16 16 C -0.05 -1.26 4.20 29.10 0.12 -1.14 16 17 C -0.24 -7.27 4.59 -20.14 -0.09 -7.36 16 18 C 0.08 2.45 7.22 43.10 0.31 2.76 16 19 C -0.07 -1.80 10.12 71.24 0.72 -1.08 16 20 N -0.33 -10.69 12.70 -47.38 -0.60 -11.29 16 21 N -0.47 -12.73 7.36 -48.00 -0.35 -13.08 16 22 H 0.45 8.70 8.96 -213.34 -1.91 6.78 16 23 C 0.10 2.75 7.21 41.40 0.30 3.05 16 24 C -0.09 -1.91 10.22 71.24 0.73 -1.18 16 25 H 0.11 2.16 8.06 -2.91 -0.02 2.13 16 26 H 0.10 2.24 7.84 -2.91 -0.02 2.22 16 27 H 0.12 2.67 7.83 -2.91 -0.02 2.64 16 28 H 0.07 2.36 7.72 -2.39 -0.02 2.34 16 29 H 0.11 2.43 6.43 -2.38 -0.02 2.42 16 30 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 31 H -0.01 -0.57 7.43 -2.39 -0.02 -0.59 16 32 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 33 H 0.12 2.63 7.57 -2.39 -0.02 2.61 16 34 H 0.12 2.58 6.38 -2.39 -0.02 2.57 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.83 7.92 -2.39 -0.02 1.81 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.10 1.75 7.14 -2.39 -0.02 1.73 16 Total: -1.00 -80.93 343.25 4.02 -76.91 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.87 Total: 17.32 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.61 Total: -1.75 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -2.70 Total: -108.04 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -80.93 4.02 -76.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292513808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.533 kcal (2) G-P(sol) polarization free energy of solvation -80.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds