Wall clock time and date at job start Mon Mar 30 2020 02:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50709 * 119.99697 * 2 1 4 4 C 1.52998 * 109.47147 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47168 * 240.00114 * 3 2 1 6 6 C 1.50704 * 109.46659 * 120.00021 * 3 2 1 7 7 O 1.21291 * 120.00259 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99258 * 179.97438 * 6 3 2 9 9 C 1.40162 * 119.99437 * 180.02562 * 8 6 3 10 10 C 1.40415 * 125.97631 * 0.31570 * 9 8 6 11 11 C 1.35232 * 107.86655 * 180.13084 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.84998 * 11 10 9 13 13 N 1.34968 * 107.86163 * 359.58679 * 11 10 9 14 14 C 1.46509 * 125.97450 * 180.23081 * 13 11 10 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 11 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46890 * 120.00230 * 19 17 15 22 22 H 1.48501 * 109.46779 * 239.99778 * 19 17 15 23 23 N 1.31221 * 125.97269 * 179.97438 * 9 8 6 24 24 H 1.08000 * 119.99776 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00075 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00303 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47377 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47039 * 300.00083 * 4 3 2 29 29 H 1.09003 * 109.47029 * 60.00039 * 4 3 2 30 30 H 1.08994 * 109.46700 * 300.00410 * 5 3 2 31 31 H 1.09001 * 109.46920 * 59.99977 * 5 3 2 32 32 H 1.08994 * 109.46832 * 179.97438 * 5 3 2 33 33 H 0.96991 * 120.00480 * 0.02562 * 8 6 3 34 34 H 1.07995 * 126.06342 * 0.02562 * 10 9 8 35 35 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 36 36 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 37 37 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 38 38 H 1.08994 * 109.46750 * 210.00045 * 14 13 11 39 39 H 1.09004 * 109.46474 * 329.99737 * 14 13 11 40 40 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9431 1.3863 -1.2493 6 6 2.9299 1.3850 1.2305 7 8 2.9354 0.4717 2.0287 8 7 3.6994 2.4708 1.4435 9 6 4.5056 2.5448 2.5877 10 6 4.6129 1.5632 3.5860 11 6 5.4858 2.0116 4.5165 12 6 5.9005 1.2822 5.7684 13 7 5.9241 3.2256 4.1220 14 6 6.8872 4.0670 4.8369 15 6 8.2827 3.7399 4.3714 16 1 8.4368 2.9815 3.6180 17 6 9.3625 4.4097 4.9065 18 7 9.1748 5.3335 5.8234 19 14 11.0923 4.0047 4.3289 20 1 11.0328 2.9375 3.2982 21 1 11.7170 5.2198 3.7472 22 1 11.9020 3.5356 5.4820 23 7 5.2968 3.5408 2.9100 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.6141 3.4120 0.0011 28 1 0.4422 2.4105 -0.8891 29 1 0.4429 2.4101 0.8909 30 1 3.6513 0.5579 -1.2492 31 1 2.3164 1.3286 -2.1392 32 1 3.4876 2.3305 -1.2494 33 1 3.6953 3.2010 0.8051 34 1 4.0898 0.6187 3.6077 35 1 5.2303 1.5516 6.5847 36 1 6.9215 1.5604 6.0296 37 1 5.8496 0.2070 5.5962 38 1 6.6732 5.1164 4.6345 39 1 6.8082 3.8800 5.9079 40 1 9.9346 5.8044 6.2001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297291317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:50 Heat of formation + Delta-G solvation = 53.760250 kcal Electronic energy + Delta-G solvation = -21270.458944 eV Core-core repulsion = 18087.464573 eV Total energy + Delta-G solvation = -3182.994371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.87038 -39.78792 -36.50410 -34.86826 -33.38845 -31.64585 -31.02352 -30.51182 -27.67995 -26.73351 -26.32896 -24.49293 -23.00667 -21.69898 -19.76629 -19.59811 -18.25441 -16.82144 -16.67638 -16.31829 -15.62918 -15.28650 -15.05800 -14.45749 -14.39451 -14.04882 -13.81470 -13.06041 -12.76000 -12.58697 -12.49058 -12.37766 -12.26952 -12.12586 -12.04967 -11.64573 -11.45714 -11.38848 -11.06622 -10.94924 -10.85994 -10.41362 -10.25029 -9.91235 -9.70466 -9.50967 -9.37175 -8.65756 -7.93094 -7.44998 -6.26403 -4.34078 2.04472 2.34750 2.85646 2.94606 3.19628 3.27606 3.33942 3.72357 3.88819 4.29411 4.33847 4.52558 4.70272 4.83339 5.07232 5.18369 5.27500 5.40048 5.41974 5.47496 5.53334 5.70819 5.73203 5.87619 5.92410 5.95575 6.10017 6.25456 6.43488 6.47775 6.56085 6.57397 6.74188 6.93209 7.04832 7.46348 7.65607 7.67515 7.88239 8.05480 8.28317 8.65557 8.75118 9.32452 10.80838 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030239 B = 0.003703 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.733172 B = 7559.338290 C = 7872.093042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.146 4.146 5 C -0.140 4.140 6 C 0.530 3.470 7 O -0.512 6.512 8 N -0.629 5.629 9 C 0.263 3.737 10 C -0.290 4.290 11 C 0.091 3.909 12 C -0.089 4.089 13 N -0.317 5.317 14 C 0.258 3.742 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.065 3.935 18 N -0.891 5.891 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.280 1.280 23 N -0.321 5.321 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.409 0.591 34 H 0.158 0.842 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.521 -7.268 -10.326 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.140 4.140 3 C -0.053 4.053 4 C -0.204 4.204 5 C -0.197 4.197 6 C 0.315 3.685 7 O -0.385 6.385 8 N -0.277 5.277 9 C 0.010 3.990 10 C -0.321 4.321 11 C -0.040 4.040 12 C -0.147 4.147 13 N -0.099 5.099 14 C 0.141 3.859 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.733 3.267 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.206 1.206 23 N -0.152 5.152 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.244 0.756 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.910 -6.569 -9.915 18.301 hybrid contribution 0.780 -0.401 -0.368 0.951 sum -13.130 -6.970 -10.283 18.075 Atomic orbital electron populations 1.23960 0.95825 1.02237 1.01053 1.22490 0.95605 0.96518 0.99356 1.19873 0.95527 0.96251 0.93697 1.21990 0.98843 0.96362 1.03184 1.21851 0.99298 1.03017 0.95545 1.20427 0.79507 0.81308 0.87257 1.90639 1.64583 1.37267 1.45969 1.42509 1.41923 1.21268 1.21978 1.19025 0.95262 0.95155 0.89545 1.21246 1.10169 1.03852 0.96878 1.21063 0.96749 0.88163 0.98030 1.20379 1.02788 0.99120 0.92406 1.48991 1.32164 1.14072 1.14689 1.19693 0.84903 0.90362 0.90991 1.21369 0.89854 1.22315 1.23889 0.91687 1.24933 0.99707 0.94504 0.94666 1.69925 1.31774 1.23949 1.27291 0.86303 0.83178 0.78489 0.78741 1.19574 1.20653 1.20623 1.77247 1.14148 1.22271 1.01494 0.88207 0.87895 0.86662 0.91634 0.90815 0.91481 0.91573 0.91015 0.91595 0.75582 0.82415 0.91087 0.89898 0.90633 0.93010 0.92800 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 13.70 29.01 0.40 -1.28 16 2 C -0.12 -1.24 8.00 -36.02 -0.29 -1.53 16 3 C -0.05 -0.51 0.84 -156.81 -0.13 -0.64 16 4 C -0.15 -1.20 7.02 37.16 0.26 -0.94 16 5 C -0.14 -1.17 8.35 37.16 0.31 -0.86 16 6 C 0.53 7.82 6.44 -10.98 -0.07 7.75 16 7 O -0.51 -9.27 13.17 5.55 0.07 -9.20 16 8 N -0.63 -9.92 5.23 -11.13 -0.06 -9.97 16 9 C 0.26 5.42 8.11 -154.38 -1.25 4.17 16 10 C -0.29 -6.10 9.52 -39.83 -0.38 -6.47 16 11 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 12 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 13 N -0.32 -7.58 3.59 -58.32 -0.21 -7.79 16 14 C 0.26 6.65 5.81 -5.19 -0.03 6.62 16 15 C -0.54 -14.79 9.39 -34.44 -0.32 -15.11 16 16 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 19 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 N -0.32 -7.47 12.59 31.44 0.40 -7.08 16 24 H 0.10 0.75 8.06 -52.49 -0.42 0.32 16 25 H 0.10 0.77 5.69 -52.49 -0.30 0.47 16 26 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 28 H 0.07 0.46 7.50 -51.93 -0.39 0.07 16 29 H 0.07 0.60 7.50 -51.93 -0.39 0.21 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.51 7.56 -51.93 -0.39 0.12 16 33 H 0.41 5.25 7.66 -40.82 -0.31 4.93 16 34 H 0.16 3.24 5.92 -52.49 -0.31 2.93 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -32.16 335.87 -6.63 -38.79 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.79 Total: 4.84 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.82 Total: -6.42 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.86 Total: -49.15 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.16 -6.63 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297291317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.546 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds