Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50709 * 119.99697 * 2 1 4 4 C 1.52998 * 109.47147 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47168 * 240.00114 * 3 2 1 6 6 C 1.50704 * 109.46659 * 120.00021 * 3 2 1 7 7 O 1.21291 * 120.00259 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99258 * 179.97438 * 6 3 2 9 9 C 1.40162 * 119.99437 * 180.02562 * 8 6 3 10 10 C 1.40415 * 125.97631 * 0.31570 * 9 8 6 11 11 C 1.35232 * 107.86655 * 180.13084 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.84998 * 11 10 9 13 13 N 1.34968 * 107.86163 * 359.58679 * 11 10 9 14 14 C 1.46509 * 125.97450 * 180.23081 * 13 11 10 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 11 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47006 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46890 * 120.00230 * 19 17 15 22 22 H 1.48501 * 109.46779 * 239.99778 * 19 17 15 23 23 N 1.31221 * 125.97269 * 179.97438 * 9 8 6 24 24 H 1.08000 * 119.99776 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00075 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00303 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47377 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47039 * 300.00083 * 4 3 2 29 29 H 1.09003 * 109.47029 * 60.00039 * 4 3 2 30 30 H 1.08994 * 109.46700 * 300.00410 * 5 3 2 31 31 H 1.09001 * 109.46920 * 59.99977 * 5 3 2 32 32 H 1.08994 * 109.46832 * 179.97438 * 5 3 2 33 33 H 0.96991 * 120.00480 * 0.02562 * 8 6 3 34 34 H 1.07995 * 126.06342 * 0.02562 * 10 9 8 35 35 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 36 36 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 37 37 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 38 38 H 1.08994 * 109.46750 * 210.00045 * 14 13 11 39 39 H 1.09004 * 109.46474 * 329.99737 * 14 13 11 40 40 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9431 1.3863 -1.2493 6 6 2.9299 1.3850 1.2305 7 8 2.9354 0.4717 2.0287 8 7 3.6994 2.4708 1.4435 9 6 4.5056 2.5448 2.5877 10 6 4.6129 1.5632 3.5860 11 6 5.4858 2.0116 4.5165 12 6 5.9005 1.2822 5.7684 13 7 5.9241 3.2256 4.1220 14 6 6.8872 4.0670 4.8369 15 6 8.2827 3.7399 4.3714 16 1 8.4368 2.9815 3.6180 17 6 9.3625 4.4097 4.9065 18 7 9.1748 5.3335 5.8234 19 14 11.0923 4.0047 4.3289 20 1 11.0328 2.9375 3.2982 21 1 11.7170 5.2198 3.7472 22 1 11.9020 3.5356 5.4820 23 7 5.2968 3.5408 2.9100 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.6141 3.4120 0.0011 28 1 0.4422 2.4105 -0.8891 29 1 0.4429 2.4101 0.8909 30 1 3.6513 0.5579 -1.2492 31 1 2.3164 1.3286 -2.1392 32 1 3.4876 2.3305 -1.2494 33 1 3.6953 3.2010 0.8051 34 1 4.0898 0.6187 3.6077 35 1 5.2303 1.5516 6.5847 36 1 6.9215 1.5604 6.0296 37 1 5.8496 0.2070 5.5962 38 1 6.6732 5.1164 4.6345 39 1 6.8082 3.8800 5.9079 40 1 9.9346 5.8044 6.2001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297291317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = 34.308403 kcal Electronic energy + Delta-G solvation = -21271.302440 eV Core-core repulsion = 18087.464573 eV Total energy + Delta-G solvation = -3183.837867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.38452 -41.10030 -37.45147 -36.37066 -35.31964 -33.14134 -32.66743 -31.57284 -28.63219 -28.31980 -27.89437 -25.69635 -24.66629 -22.95545 -21.28654 -21.00314 -19.32179 -18.80411 -17.87683 -17.71586 -17.17825 -16.61568 -16.35705 -16.08281 -15.68638 -15.34517 -14.82957 -14.69913 -14.35170 -13.83868 -13.70829 -13.63443 -13.38677 -13.27188 -13.15553 -13.08371 -12.81883 -12.70217 -12.68082 -12.28296 -12.16545 -12.07434 -11.66589 -11.55466 -11.34800 -10.80594 -10.74081 -10.30470 -9.60578 -9.16367 -8.34060 -6.51811 0.88833 1.16386 1.35636 1.36654 1.40266 1.50675 1.57970 2.18223 2.29943 2.42848 2.95627 3.46207 3.66946 3.85403 3.96539 4.07441 4.13041 4.44886 4.48993 4.68785 4.73265 4.74589 4.78868 4.84370 4.84633 4.85855 4.96656 5.00016 5.06962 5.12235 5.22458 5.24569 5.29341 5.52685 5.72947 5.79638 5.84111 5.92101 6.24123 6.25823 6.60858 6.96897 7.09653 7.19378 8.72191 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030239 B = 0.003703 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.733172 B = 7559.338290 C = 7872.093042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C -0.039 4.039 4 C -0.146 4.146 5 C -0.139 4.139 6 C 0.527 3.473 7 O -0.546 6.546 8 N -0.622 5.622 9 C 0.271 3.729 10 C -0.301 4.301 11 C 0.088 3.912 12 C -0.086 4.086 13 N -0.342 5.342 14 C 0.275 3.725 15 C -0.553 4.553 16 H 0.048 0.952 17 C 0.023 3.977 18 N -0.917 5.917 19 Si 0.972 3.028 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.267 1.267 23 N -0.357 5.357 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.423 0.577 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.025 0.975 39 H 0.052 0.948 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.290 -7.907 -11.560 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.167 4.167 3 C -0.042 4.042 4 C -0.204 4.204 5 C -0.196 4.196 6 C 0.315 3.685 7 O -0.421 6.421 8 N -0.271 5.271 9 C 0.017 3.983 10 C -0.332 4.332 11 C -0.043 4.043 12 C -0.144 4.144 13 N -0.124 5.124 14 C 0.156 3.844 15 C -0.591 4.591 16 H 0.067 0.933 17 C -0.178 4.178 18 N -0.556 5.556 19 Si 0.796 3.204 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.192 1.192 23 N -0.187 5.187 24 H 0.129 0.871 25 H 0.136 0.864 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.261 0.739 34 H 0.181 0.819 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.705 -7.204 -11.169 19.822 hybrid contribution 0.876 -0.266 -0.016 0.916 sum -13.829 -7.471 -11.185 19.292 Atomic orbital electron populations 1.24202 0.95266 1.03541 0.98306 1.22487 0.96283 0.96061 1.01874 1.19896 0.95277 0.97356 0.91654 1.22049 0.98575 0.95571 1.04163 1.21898 0.99305 1.02889 0.95550 1.21491 0.78864 0.80016 0.88159 1.90606 1.65580 1.38371 1.47583 1.42693 1.41261 1.22375 1.20807 1.19393 0.94337 0.94072 0.90510 1.21420 1.10480 1.04188 0.97130 1.21746 0.96034 0.87311 0.99167 1.20504 1.02252 1.00231 0.91378 1.48799 1.33141 1.14990 1.15515 1.19257 0.84853 0.89253 0.90992 1.21459 0.91212 1.22465 1.24014 0.93322 1.25733 1.03482 0.94076 0.94504 1.70001 1.33242 1.24440 1.27871 0.85296 0.78356 0.78255 0.78489 1.19915 1.19898 1.19156 1.77169 1.15715 1.23833 1.02029 0.87094 0.86393 0.87862 0.90913 0.88085 0.92199 0.92740 0.88481 0.90954 0.73933 0.81858 0.88845 0.91323 0.88021 0.95688 0.93022 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 13.70 67.78 0.93 -1.67 16 2 C -0.15 -2.80 8.00 25.65 0.21 -2.60 16 3 C -0.04 -0.72 0.84 -53.67 -0.05 -0.77 16 4 C -0.15 -1.99 7.02 71.98 0.51 -1.49 16 5 C -0.14 -2.05 8.35 71.98 0.60 -1.45 16 6 C 0.53 15.19 6.44 87.66 0.56 15.76 16 7 O -0.55 -19.75 13.17 -3.06 -0.04 -19.79 16 8 N -0.62 -19.33 5.23 -307.50 -1.61 -20.94 16 9 C 0.27 11.28 8.11 133.32 1.08 12.36 16 10 C -0.30 -12.72 9.52 22.11 0.21 -12.51 16 11 C 0.09 3.80 6.92 41.38 0.29 4.08 16 12 C -0.09 -2.92 9.89 71.24 0.70 -2.22 16 13 N -0.34 -16.84 3.59 -338.43 -1.22 -18.06 16 14 C 0.28 14.70 5.81 85.63 0.50 15.20 16 15 C -0.55 -31.27 9.39 25.60 0.24 -31.03 16 16 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 17 C 0.02 1.27 5.46 84.66 0.46 1.73 16 18 N -0.92 -51.87 13.29 21.45 0.28 -51.58 16 19 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 N -0.36 -17.03 12.59 -54.44 -0.69 -17.71 16 24 H 0.11 1.37 8.06 -2.91 -0.02 1.35 16 25 H 0.12 1.37 5.69 -2.91 -0.02 1.35 16 26 H 0.10 2.16 8.06 -2.91 -0.02 2.14 16 27 H 0.07 0.90 7.56 -2.39 -0.02 0.88 16 28 H 0.10 0.86 7.50 -2.39 -0.02 0.84 16 29 H 0.06 0.92 7.50 -2.39 -0.02 0.90 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.97 7.56 -2.39 -0.02 0.95 16 33 H 0.42 10.49 7.66 -92.71 -0.71 9.78 16 34 H 0.16 6.71 5.92 -2.91 -0.02 6.69 16 35 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.07 2.55 7.71 -2.39 -0.02 2.53 16 37 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 38 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 2.73 7.65 -2.39 -0.02 2.71 16 40 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -70.45 335.87 5.33 -65.12 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.33 Total: 22.32 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 6.24 Total: -4.59 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -3.23 Total: -108.29 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.04 Total: -19.79 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -70.45 5.33 -65.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297291317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.425 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds