Wall clock time and date at job start Mon Mar 30 2020 01:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38539 * 120.01588 * 2 1 4 4 C 1.40079 * 117.81644 * 179.97438 * 3 2 1 5 5 C 1.48138 * 121.14439 * 180.02562 * 4 3 2 6 6 O 1.21519 * 119.99541 * 173.99822 * 5 4 3 7 7 N 1.34771 * 120.00337 * 354.00986 * 5 4 3 8 8 C 1.46497 * 120.00292 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47382 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47318 * 300.00288 * 9 8 7 11 11 C 1.53001 * 109.46733 * 60.00190 * 9 8 7 12 12 C 1.50703 * 109.47070 * 180.02562 * 9 8 7 13 13 H 1.08001 * 120.00004 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99643 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00135 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99723 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47219 * 59.99362 * 16 14 12 18 18 H 1.48504 * 109.46876 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46720 * 299.99473 * 16 14 12 20 20 C 1.39766 * 117.70825 * 0.02562 * 4 3 2 21 21 C 1.50693 * 120.17524 * 179.97438 * 20 4 3 22 22 N 1.31901 * 119.65337 * 0.25053 * 20 4 3 23 23 N 1.28274 * 122.32743 * 359.47251 * 22 20 4 24 24 H 1.09002 * 109.46919 * 89.99712 * 1 2 3 25 25 H 1.08991 * 109.47042 * 210.00154 * 1 2 3 26 26 H 1.09000 * 109.46702 * 330.00037 * 1 2 3 27 27 H 1.08000 * 121.09643 * 359.95345 * 3 2 1 28 28 H 0.97003 * 120.00061 * 359.97438 * 7 5 4 29 29 H 1.08996 * 109.47001 * 299.99919 * 8 7 5 30 30 H 1.09007 * 109.47156 * 59.99671 * 8 7 5 31 31 H 1.09002 * 109.47351 * 59.99742 * 10 9 8 32 32 H 1.09000 * 109.47105 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47402 * 300.00107 * 10 9 8 34 34 H 1.08996 * 109.47068 * 60.00394 * 11 9 8 35 35 H 1.09000 * 109.47124 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.47558 * 299.99933 * 11 9 8 37 37 H 0.97000 * 119.99640 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47330 * 83.40845 * 21 20 4 39 39 H 1.09000 * 109.47073 * 203.41552 * 21 20 4 40 40 H 1.09004 * 109.46675 * 323.40785 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5999 1.1458 0.0006 5 6 4.4141 2.3834 0.0012 6 8 5.6224 2.3155 0.1117 7 7 3.8149 3.5844 -0.1206 8 6 4.6201 4.8082 -0.1194 9 6 3.7022 6.0229 -0.2708 10 6 2.9330 5.9197 -1.5894 11 6 2.7124 6.0625 0.8952 12 6 4.5306 7.2818 -0.2703 13 1 5.6045 7.2215 -0.1722 14 6 3.9176 8.5104 -0.3950 15 7 2.6100 8.5838 -0.5149 16 14 4.9445 10.0709 -0.3950 17 1 5.9040 10.0320 -1.5276 18 1 4.0535 11.2498 -0.5418 19 1 5.6923 10.1712 0.8841 20 6 4.2018 -0.1156 0.0005 21 6 5.7037 -0.2382 0.0005 22 7 3.4483 -1.1982 -0.0050 23 7 2.1668 -1.1420 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6784 2.1452 -0.0008 28 1 2.8505 3.6385 -0.2090 29 1 5.1684 4.8815 0.8197 30 1 5.3251 4.7802 -0.9504 31 1 2.3339 5.0091 -1.5903 32 1 2.2787 6.7848 -1.6970 33 1 3.6381 5.8914 -2.4201 34 1 3.2604 6.1361 1.8345 35 1 2.0587 6.9281 0.7877 36 1 2.1132 5.1519 0.8944 37 1 2.1788 9.4482 -0.6030 38 1 6.0755 -0.1502 1.0214 39 1 5.9891 -1.2076 -0.4079 40 1 6.1329 0.5547 -0.6121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315977690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:33 Heat of formation + Delta-G solvation = 8.154407 kcal Electronic energy + Delta-G solvation = -21560.997915 eV Core-core repulsion = 18376.025926 eV Total energy + Delta-G solvation = -3184.971989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42239 -39.31493 -36.61936 -34.67590 -33.81085 -33.25312 -31.08782 -29.81232 -26.92004 -26.13554 -25.85540 -25.38900 -24.39260 -22.67711 -20.58606 -19.02682 -17.73513 -17.61796 -16.00331 -15.82354 -15.71405 -15.18588 -14.84462 -14.75180 -14.29404 -13.59839 -13.47287 -13.36645 -13.00104 -12.94842 -12.75837 -12.46851 -12.36476 -12.08265 -11.51673 -11.30187 -11.11385 -10.94098 -10.80194 -10.51740 -10.36849 -10.31621 -10.23850 -9.76717 -9.62815 -9.56371 -9.31402 -8.91496 -8.64515 -8.44522 -6.10869 -4.21400 0.24152 0.70000 2.82679 3.24753 3.26012 3.29527 3.34897 3.51658 3.78485 4.14333 4.26702 4.32654 4.51390 4.72505 4.97094 5.10702 5.16283 5.28828 5.36709 5.58247 5.60784 5.69590 5.88551 6.01351 6.06472 6.16790 6.29049 6.35971 6.59576 6.67470 6.77013 6.80932 6.88506 7.21961 7.43184 7.59303 7.74631 7.89173 8.01723 8.25127 8.35920 8.54143 8.78660 9.45033 10.90614 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028279 B = 0.004105 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.884318 B = 6819.097214 C = 7603.833848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.056 3.944 3 C -0.083 4.083 4 C -0.123 4.123 5 C 0.550 3.450 6 O -0.528 6.528 7 N -0.703 5.703 8 C 0.130 3.870 9 C 0.056 3.944 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.508 4.508 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.115 3.885 21 C -0.103 4.103 22 N -0.245 5.245 23 N -0.230 5.230 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.398 0.602 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.004 0.996 32 H 0.087 0.913 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.087 0.913 36 H 0.004 0.996 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 -12.598 0.541 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 C -0.113 4.113 4 C -0.137 4.137 5 C 0.334 3.666 6 O -0.406 6.406 7 N -0.354 5.354 8 C 0.008 3.992 9 C 0.055 3.945 10 C -0.189 4.189 11 C -0.189 4.189 12 C -0.547 4.547 13 H 0.076 0.924 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.030 4.030 21 C -0.161 4.161 22 N -0.087 5.087 23 N -0.073 5.073 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.172 0.828 28 H 0.234 0.766 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.023 0.977 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.311 -14.107 0.592 14.503 hybrid contribution -0.003 2.532 -0.022 2.532 sum -3.315 -11.575 0.571 12.054 Atomic orbital electron populations 1.20696 0.86988 1.04279 1.03852 1.22839 0.99283 0.89933 0.96767 1.22599 0.93500 1.00524 0.94681 1.21309 0.94374 0.96164 1.01861 1.17887 0.87361 0.83016 0.78341 1.90726 1.13492 1.86523 1.49905 1.46278 1.11572 1.06159 1.71345 1.21864 0.94230 0.82053 1.01021 1.18374 0.92460 0.90826 0.92828 1.21850 0.99780 0.99603 0.97712 1.21850 0.99599 0.99781 0.97713 1.20910 0.93200 0.89895 1.50683 0.92389 1.24870 0.94961 0.98928 0.94633 1.69779 1.08135 1.24795 1.49678 0.86614 0.80070 0.82372 0.78714 1.20238 1.21284 1.20234 1.23128 0.99714 0.88523 0.91595 1.20953 0.86420 1.04095 1.04659 1.73027 0.98923 1.26410 1.10354 1.72773 1.01893 1.24956 1.07659 0.89669 0.89832 0.89946 0.82775 0.76616 0.92134 0.92140 0.97710 0.89422 0.95279 0.95277 0.89412 0.97721 0.92855 0.89493 0.90836 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.19 36.01 0.37 -0.39 16 2 C 0.06 0.65 6.86 -82.45 -0.57 0.08 16 3 C -0.08 -0.98 9.34 -38.78 -0.36 -1.34 16 4 C -0.12 -1.74 5.92 -104.57 -0.62 -2.36 16 5 C 0.55 8.96 7.73 -12.20 -0.09 8.86 16 6 O -0.53 -9.80 13.54 5.35 0.07 -9.72 16 7 N -0.70 -11.51 4.92 -61.16 -0.30 -11.81 16 8 C 0.13 2.56 4.50 -4.04 -0.02 2.54 16 9 C 0.06 1.21 0.50 -155.66 -0.08 1.14 16 10 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 11 C -0.13 -2.78 8.08 37.16 0.30 -2.48 16 12 C -0.51 -12.70 8.01 -34.44 -0.28 -12.97 16 13 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 15 N -0.89 -22.65 9.35 55.43 0.52 -22.14 16 16 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.11 1.66 6.91 -81.99 -0.57 1.09 16 21 C -0.10 -1.32 8.96 36.00 0.32 -1.00 16 22 N -0.25 -3.68 11.42 33.81 0.39 -3.30 16 23 N -0.23 -3.25 11.40 33.58 0.38 -2.86 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.15 1.43 6.65 -52.49 -0.35 1.08 16 28 H 0.40 5.77 4.39 -40.82 -0.18 5.59 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 32 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 36 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 37 H 0.26 6.50 8.31 -40.82 -0.34 6.17 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 1.48 5.96 -51.93 -0.31 1.17 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -27.86 323.87 -5.99 -33.84 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.52 Total: 3.78 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.38 Total: -7.70 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.99 Total: -40.10 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.86 -5.99 -33.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315977690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.999 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds