Wall clock time and date at job start Mon Mar 30 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38539 * 120.01588 * 2 1 4 4 C 1.40079 * 117.81644 * 179.97438 * 3 2 1 5 5 C 1.48138 * 121.14439 * 180.02562 * 4 3 2 6 6 O 1.21519 * 119.99541 * 173.99822 * 5 4 3 7 7 N 1.34771 * 120.00337 * 354.00986 * 5 4 3 8 8 C 1.46497 * 120.00292 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47382 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47318 * 300.00288 * 9 8 7 11 11 C 1.53001 * 109.46733 * 60.00190 * 9 8 7 12 12 C 1.50703 * 109.47070 * 180.02562 * 9 8 7 13 13 H 1.08001 * 120.00004 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99643 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00135 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99723 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47219 * 59.99362 * 16 14 12 18 18 H 1.48504 * 109.46876 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46720 * 299.99473 * 16 14 12 20 20 C 1.39766 * 117.70825 * 0.02562 * 4 3 2 21 21 C 1.50693 * 120.17524 * 179.97438 * 20 4 3 22 22 N 1.31901 * 119.65337 * 0.25053 * 20 4 3 23 23 N 1.28274 * 122.32743 * 359.47251 * 22 20 4 24 24 H 1.09002 * 109.46919 * 89.99712 * 1 2 3 25 25 H 1.08991 * 109.47042 * 210.00154 * 1 2 3 26 26 H 1.09000 * 109.46702 * 330.00037 * 1 2 3 27 27 H 1.08000 * 121.09643 * 359.95345 * 3 2 1 28 28 H 0.97003 * 120.00061 * 359.97438 * 7 5 4 29 29 H 1.08996 * 109.47001 * 299.99919 * 8 7 5 30 30 H 1.09007 * 109.47156 * 59.99671 * 8 7 5 31 31 H 1.09002 * 109.47351 * 59.99742 * 10 9 8 32 32 H 1.09000 * 109.47105 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47402 * 300.00107 * 10 9 8 34 34 H 1.08996 * 109.47068 * 60.00394 * 11 9 8 35 35 H 1.09000 * 109.47124 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.47558 * 299.99933 * 11 9 8 37 37 H 0.97000 * 119.99640 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47330 * 83.40845 * 21 20 4 39 39 H 1.09000 * 109.47073 * 203.41552 * 21 20 4 40 40 H 1.09004 * 109.46675 * 323.40785 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5999 1.1458 0.0006 5 6 4.4141 2.3834 0.0012 6 8 5.6224 2.3155 0.1117 7 7 3.8149 3.5844 -0.1206 8 6 4.6201 4.8082 -0.1194 9 6 3.7022 6.0229 -0.2708 10 6 2.9330 5.9197 -1.5894 11 6 2.7124 6.0625 0.8952 12 6 4.5306 7.2818 -0.2703 13 1 5.6045 7.2215 -0.1722 14 6 3.9176 8.5104 -0.3950 15 7 2.6100 8.5838 -0.5149 16 14 4.9445 10.0709 -0.3950 17 1 5.9040 10.0320 -1.5276 18 1 4.0535 11.2498 -0.5418 19 1 5.6923 10.1712 0.8841 20 6 4.2018 -0.1156 0.0005 21 6 5.7037 -0.2382 0.0005 22 7 3.4483 -1.1982 -0.0050 23 7 2.1668 -1.1420 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6784 2.1452 -0.0008 28 1 2.8505 3.6385 -0.2090 29 1 5.1684 4.8815 0.8197 30 1 5.3251 4.7802 -0.9504 31 1 2.3339 5.0091 -1.5903 32 1 2.2787 6.7848 -1.6970 33 1 3.6381 5.8914 -2.4201 34 1 3.2604 6.1361 1.8345 35 1 2.0587 6.9281 0.7877 36 1 2.1132 5.1519 0.8944 37 1 2.1788 9.4482 -0.6030 38 1 6.0755 -0.1502 1.0214 39 1 5.9891 -1.2076 -0.4079 40 1 6.1329 0.5547 -0.6121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315977690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:32 Heat of formation + Delta-G solvation = -8.517188 kcal Electronic energy + Delta-G solvation = -21561.720849 eV Core-core repulsion = 18376.025926 eV Total energy + Delta-G solvation = -3185.694924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.47321 -40.63377 -38.22807 -35.72522 -35.09690 -34.54853 -32.75707 -30.77945 -27.88141 -27.58671 -27.55752 -27.08629 -25.63953 -23.73091 -21.88441 -20.67684 -18.94530 -18.77974 -17.75768 -16.92316 -16.77713 -16.58957 -16.53509 -16.01235 -15.53822 -14.85426 -14.68395 -14.58231 -14.31349 -14.21467 -14.02298 -13.47421 -13.31432 -13.19047 -13.08986 -13.01257 -12.67750 -12.61821 -12.25085 -12.14566 -12.08846 -11.49346 -11.47472 -11.37427 -11.24178 -10.72632 -10.58404 -10.53463 -10.38610 -10.03090 -8.01758 -6.16890 -0.81227 -0.26418 1.45083 1.47308 1.52696 1.63229 1.97713 2.43977 2.47696 2.85386 3.16580 3.22661 3.28075 3.54833 3.67262 4.06987 4.23189 4.39179 4.45507 4.50599 4.67698 4.70241 4.77519 4.78348 4.83025 4.96731 5.04958 5.07842 5.10332 5.18802 5.19786 5.29625 5.35934 5.53233 5.67933 5.68819 6.16540 6.21230 6.42988 6.45137 6.86550 7.05261 7.50972 7.53149 8.96784 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028279 B = 0.004105 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.884318 B = 6819.097214 C = 7603.833848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.061 3.939 3 C -0.069 4.069 4 C -0.137 4.137 5 C 0.554 3.446 6 O -0.554 6.554 7 N -0.696 5.696 8 C 0.147 3.853 9 C 0.051 3.949 10 C -0.123 4.123 11 C -0.123 4.123 12 C -0.529 4.529 13 H 0.046 0.954 14 C 0.031 3.969 15 N -0.897 5.897 16 Si 0.941 3.059 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.278 1.278 20 C 0.105 3.895 21 C -0.099 4.099 22 N -0.266 5.266 23 N -0.251 5.251 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.185 0.815 28 H 0.409 0.591 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.260 0.740 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -13.193 0.574 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.084 4.084 3 C -0.099 4.099 4 C -0.151 4.151 5 C 0.340 3.660 6 O -0.434 6.434 7 N -0.348 5.348 8 C 0.023 3.977 9 C 0.050 3.950 10 C -0.181 4.181 11 C -0.181 4.181 12 C -0.567 4.567 13 H 0.064 0.936 14 C -0.169 4.169 15 N -0.536 5.536 16 Si 0.768 3.232 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.203 1.203 20 C -0.040 4.040 21 C -0.156 4.156 22 N -0.107 5.107 23 N -0.094 5.094 24 H 0.119 0.881 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.202 0.798 28 H 0.247 0.753 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.908 -14.726 0.624 15.535 hybrid contribution 0.437 2.681 -0.032 2.717 sum -4.471 -12.045 0.592 12.861 Atomic orbital electron populations 1.20884 0.83896 1.05712 1.05253 1.23452 1.01114 0.88977 0.94861 1.22957 0.92410 1.01968 0.92516 1.21106 0.95347 0.94798 1.03867 1.18123 0.87177 0.83407 0.77288 1.90722 1.14882 1.86943 1.50855 1.46012 1.11814 1.05230 1.71696 1.21415 0.93769 0.82679 0.99790 1.18372 0.92658 0.90434 0.93528 1.21697 0.99330 1.00172 0.96864 1.21697 0.99149 1.00434 0.96794 1.21231 0.93143 0.91666 1.50684 0.93590 1.25395 0.95822 1.00953 0.94738 1.69883 1.08733 1.24991 1.49980 0.85878 0.78912 0.79990 0.78374 1.20362 1.21006 1.20328 1.23274 1.00204 0.88689 0.91866 1.20892 0.85919 1.04320 1.04516 1.72999 0.99588 1.26761 1.11342 1.72714 1.01686 1.26519 1.08457 0.88072 0.89412 0.87554 0.79798 0.75286 0.93443 0.93488 0.94291 0.91838 0.96254 0.96200 0.91846 0.94180 0.93052 0.89391 0.89450 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.19 71.24 0.73 -0.39 16 2 C 0.06 1.23 6.86 42.62 0.29 1.52 16 3 C -0.07 -1.39 9.34 22.79 0.21 -1.18 16 4 C -0.14 -3.64 5.92 -19.83 -0.12 -3.76 16 5 C 0.55 17.34 7.73 86.87 0.67 18.02 16 6 O -0.55 -20.44 13.54 -3.78 -0.05 -20.50 16 7 N -0.70 -21.38 4.92 -465.70 -2.29 -23.67 16 8 C 0.15 5.65 4.50 86.38 0.39 6.04 16 9 C 0.05 2.16 0.50 -52.93 -0.03 2.14 16 10 C -0.12 -5.02 8.08 71.98 0.58 -4.44 16 11 C -0.12 -5.00 8.08 71.98 0.58 -4.41 16 12 C -0.53 -26.47 8.01 25.60 0.21 -26.26 16 13 H 0.05 2.35 7.74 -2.91 -0.02 2.33 16 14 C 0.03 1.56 5.15 84.65 0.44 2.00 16 15 N -0.90 -45.70 9.35 21.45 0.20 -45.50 16 16 Si 0.94 41.07 29.54 68.60 2.03 43.09 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 C 0.10 2.93 6.91 42.92 0.30 3.23 16 21 C -0.10 -2.50 8.96 71.23 0.64 -1.87 16 22 N -0.27 -7.72 11.42 -46.94 -0.54 -8.25 16 23 N -0.25 -6.66 11.40 -47.68 -0.54 -7.21 16 24 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.11 0.73 8.09 -2.39 -0.02 0.71 16 27 H 0.18 2.51 6.65 -2.91 -0.02 2.49 16 28 H 0.41 10.45 4.39 -92.71 -0.41 10.04 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.04 1.28 6.86 -2.39 -0.02 1.26 16 32 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 36 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 37 H 0.26 12.87 8.31 -92.71 -0.77 12.10 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 2.60 5.96 -2.38 -0.01 2.58 16 Total: -1.00 -60.14 323.87 4.34 -55.80 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.65 Total: 15.61 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.89 Total: -9.37 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.17 Total: -84.63 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -60.14 4.34 -55.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315977690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.279 kcal (2) G-P(sol) polarization free energy of solvation -60.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds