Wall clock time and date at job start Mon Mar 30 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35116 * 125.55122 * 2 1 4 4 C 1.40983 * 108.24057 * 179.97438 * 3 2 1 5 5 N 1.33309 * 126.35679 * 179.97438 * 4 3 2 6 6 C 1.32908 * 120.00006 * 0.02562 * 5 4 3 7 7 O 1.21590 * 120.00257 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99858 * 179.97438 * 6 5 4 9 9 C 1.55238 * 110.46892 * 294.81296 * 8 6 5 10 10 C 1.54894 * 102.58338 * 203.39217 * 9 8 6 11 11 C 1.54266 * 104.31305 * 37.93170 * 10 9 8 12 12 C 1.53869 * 106.60031 * 336.32486 * 11 10 9 13 13 N 1.37281 * 107.28840 * 0.26170 * 4 3 2 14 14 H 0.96990 * 126.35253 * 179.70353 * 13 4 3 15 15 N 1.36340 * 125.54909 * 179.97438 * 2 1 3 16 16 C 1.46496 * 125.86231 * 0.02650 * 15 2 1 17 17 C 1.50693 * 109.47434 * 84.99850 * 16 15 2 18 18 H 1.08001 * 119.99860 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00198 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99881 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00178 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47039 * 59.99852 * 21 19 17 23 23 H 1.48504 * 109.47399 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47350 * 299.99652 * 21 19 17 25 25 H 1.08996 * 109.46946 * 89.98154 * 1 2 3 26 26 H 1.08999 * 109.47150 * 209.98318 * 1 2 3 27 27 H 1.09004 * 109.47045 * 329.97805 * 1 2 3 28 28 H 1.08004 * 125.88138 * 359.97333 * 3 2 1 29 29 H 1.09007 * 110.43017 * 57.46466 * 8 6 5 30 30 H 1.08996 * 110.89448 * 85.10781 * 9 8 6 31 31 H 1.08993 * 110.76342 * 321.62447 * 9 8 6 32 32 H 1.09002 * 110.48891 * 279.18596 * 10 9 8 33 33 H 1.08998 * 110.48494 * 156.67683 * 10 9 8 34 34 H 1.09001 * 110.03084 * 95.60669 * 11 10 9 35 35 H 1.08996 * 110.03108 * 216.98559 * 11 10 9 36 36 H 1.08999 * 110.04012 * 119.28327 * 12 11 10 37 37 H 1.09006 * 110.02998 * 240.67078 * 12 11 10 38 38 H 1.09007 * 109.46989 * 204.99885 * 16 15 2 39 39 H 1.09001 * 109.46971 * 324.99058 * 16 15 2 40 40 H 0.97004 * 120.00091 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0993 0.0000 4 6 3.6386 0.6798 0.0006 5 7 4.7125 1.4696 0.0003 6 6 4.5659 2.7906 -0.0001 7 8 3.4523 3.2787 0.0002 8 6 5.7800 3.6834 0.0001 9 6 6.5784 3.5137 1.3206 10 6 7.3558 4.8498 1.4190 11 6 6.3607 5.9091 0.9017 12 6 5.3588 5.1675 -0.0004 13 7 3.6381 -0.6930 -0.0050 14 1 4.4190 -1.2682 -0.0101 15 7 2.2997 -1.1093 0.0005 16 6 1.8327 -2.4978 0.0006 17 6 1.5557 -2.9348 -1.4148 18 1 1.7115 -2.2468 -2.2326 19 6 1.1024 -4.2125 -1.6656 20 7 0.9122 -5.0501 -0.6697 21 14 0.7583 -4.7539 -3.4200 22 1 2.0032 -4.6508 -4.2230 23 1 0.2850 -6.1615 -3.4199 24 1 -0.2863 -3.8801 -4.0119 25 1 -0.3633 0.0003 -1.0276 26 1 -0.3633 -0.8901 0.5136 27 1 -0.3633 0.8898 0.5142 28 1 1.9487 2.1231 -0.0004 29 1 6.4124 3.4660 -0.8607 30 1 7.2661 2.6708 1.2535 31 1 5.9031 3.3964 2.1681 32 1 8.2447 4.8214 0.7886 33 1 7.6296 5.0566 2.4536 34 1 5.8381 6.3709 1.7394 35 1 6.8899 6.6693 0.3272 36 1 4.3499 5.2693 0.3994 37 1 5.4010 5.5679 -1.0133 38 1 2.5996 -3.1390 0.4353 39 1 0.9189 -2.5738 0.5898 40 1 0.5936 -5.9492 -0.8462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330566514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:10 Heat of formation + Delta-G solvation = 39.823068 kcal Electronic energy + Delta-G solvation = -21111.595072 eV Core-core repulsion = 17927.996339 eV Total energy + Delta-G solvation = -3183.598733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94700 -39.05231 -36.75230 -34.31915 -33.14300 -32.24588 -30.80025 -29.02910 -28.43470 -27.54420 -26.67192 -23.47599 -22.27012 -20.72690 -20.08457 -19.64907 -18.52887 -17.16145 -16.81434 -16.07679 -15.40028 -15.20341 -14.95259 -14.83571 -14.22025 -13.92330 -13.22108 -13.17394 -12.87444 -12.83768 -12.68680 -12.40426 -12.09915 -11.86067 -11.49965 -11.34536 -11.10970 -11.05561 -10.94342 -10.81367 -10.55569 -10.52254 -10.35749 -10.24513 -9.46284 -9.16491 -8.93740 -8.86502 -8.27153 -6.96449 -6.51752 -4.67879 1.64530 2.04424 2.96975 3.05643 3.11445 3.14775 4.03254 4.21776 4.35636 4.74224 4.78846 4.79799 4.94651 5.00553 5.24318 5.52314 5.61141 5.69063 5.70619 5.78418 5.79541 5.83679 5.88965 6.02155 6.07039 6.10389 6.19759 6.23350 6.42654 6.45017 6.48539 6.52694 6.58666 6.69925 6.77535 7.35716 7.47734 7.50890 7.65850 7.98558 8.36592 8.42456 9.02673 9.44211 10.50545 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035275 B = 0.003401 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.579966 B = 8229.929296 C = 8402.333766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.189 3.811 3 C -0.334 4.334 4 C 0.470 3.530 5 N -0.701 5.701 6 C 0.499 3.501 7 O -0.588 6.588 8 C -0.085 4.085 9 C -0.100 4.100 10 C -0.126 4.126 11 C -0.123 4.123 12 C -0.116 4.116 13 N -0.467 5.467 14 H 0.445 0.555 15 N -0.339 5.339 16 C 0.254 3.746 17 C -0.557 4.557 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.887 5.887 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.271 1.271 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.183 0.817 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 10.787 3.255 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 C -0.366 4.366 4 C 0.221 3.779 5 N -0.465 5.465 6 C 0.285 3.715 7 O -0.471 6.471 8 C -0.107 4.107 9 C -0.138 4.138 10 C -0.164 4.164 11 C -0.161 4.161 12 C -0.154 4.154 13 N -0.188 5.188 14 H 0.292 0.708 15 N -0.125 5.125 16 C 0.138 3.862 17 C -0.595 4.595 18 H 0.087 0.913 19 C -0.134 4.134 20 N -0.523 5.523 21 Si 0.736 3.264 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.196 1.196 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.200 0.800 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.938 10.184 3.316 11.794 hybrid contribution -0.240 -0.623 -1.019 1.218 sum 4.698 9.561 2.297 10.898 Atomic orbital electron populations 1.20599 0.86325 1.03886 1.04309 1.21374 0.94520 0.85641 0.92291 1.22267 0.91242 1.00251 1.22814 1.19268 0.91819 0.82104 0.84701 1.68776 1.27911 1.05574 1.44217 1.20656 0.89032 0.86382 0.75474 1.90496 1.27442 1.79169 1.49993 1.21723 0.95659 0.93863 0.99421 1.22344 0.98043 0.96984 0.96399 1.22394 0.98089 0.95299 1.00579 1.22135 0.97017 0.97793 0.99143 1.22092 1.00391 0.93366 0.99562 1.44528 0.98846 1.05292 1.70168 0.70790 1.47925 0.92813 1.08230 1.63526 1.20039 0.96502 0.70153 0.99550 1.21333 1.47825 0.98760 0.91602 0.91334 1.24942 0.94215 0.95767 0.98475 1.69887 1.43924 1.06978 1.31521 0.86351 0.79158 0.77841 0.83080 1.19844 1.20771 1.19638 0.89121 0.90084 0.89535 0.80009 0.89326 0.90951 0.91778 0.91774 0.92006 0.92140 0.92271 0.90031 0.92247 0.93091 0.91435 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.09 36.01 0.36 -0.95 16 2 C 0.19 3.39 6.93 -81.70 -0.57 2.83 16 3 C -0.33 -6.51 9.40 -39.65 -0.37 -6.88 16 4 C 0.47 9.43 8.07 -155.18 -1.25 8.18 16 5 N -0.70 -14.15 10.49 -11.59 -0.12 -14.27 16 6 C 0.50 9.84 7.01 -11.81 -0.08 9.76 16 7 O -0.59 -12.74 12.33 5.29 0.07 -12.67 16 8 C -0.09 -1.33 3.33 -89.92 -0.30 -1.63 16 9 C -0.10 -1.35 6.33 -24.55 -0.16 -1.51 16 10 C -0.13 -1.37 6.82 -25.07 -0.17 -1.54 16 11 C -0.12 -1.38 6.80 -25.62 -0.17 -1.56 16 12 C -0.12 -1.62 6.19 -25.62 -0.16 -1.78 16 13 N -0.47 -8.63 7.37 31.32 0.23 -8.40 16 14 H 0.44 7.22 8.96 -182.56 -1.64 5.59 16 15 N -0.34 -6.50 3.63 -58.03 -0.21 -6.71 16 16 C 0.25 5.34 5.93 -5.20 -0.03 5.31 16 17 C -0.56 -13.21 9.39 -34.44 -0.32 -13.53 16 18 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -22.35 13.29 55.43 0.74 -21.61 16 21 Si 0.91 19.16 29.54 -169.99 -5.02 14.13 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.18 3.69 5.77 -52.48 -0.30 3.39 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.30 6.84 -51.93 -0.36 0.95 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.42 7.18 -51.93 -0.37 1.05 16 40 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -28.15 331.21 -9.88 -38.03 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.23 Total: 8.21 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.32 Total: -1.70 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.63 Total: -51.00 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.15 -9.88 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330566514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.850 kcal (2) G-P(sol) polarization free energy of solvation -28.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds