Wall clock time and date at job start Mon Mar 30 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35116 * 125.55122 * 2 1 4 4 C 1.40983 * 108.24057 * 179.97438 * 3 2 1 5 5 N 1.33309 * 126.35679 * 179.97438 * 4 3 2 6 6 C 1.32908 * 120.00006 * 0.02562 * 5 4 3 7 7 O 1.21590 * 120.00257 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99858 * 179.97438 * 6 5 4 9 9 C 1.55238 * 110.46892 * 294.81296 * 8 6 5 10 10 C 1.54894 * 102.58338 * 203.39217 * 9 8 6 11 11 C 1.54266 * 104.31305 * 37.93170 * 10 9 8 12 12 C 1.53869 * 106.60031 * 336.32486 * 11 10 9 13 13 N 1.37281 * 107.28840 * 0.26170 * 4 3 2 14 14 H 0.96990 * 126.35253 * 179.70353 * 13 4 3 15 15 N 1.36340 * 125.54909 * 179.97438 * 2 1 3 16 16 C 1.46496 * 125.86231 * 0.02650 * 15 2 1 17 17 C 1.50693 * 109.47434 * 84.99850 * 16 15 2 18 18 H 1.08001 * 119.99860 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00198 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99881 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00178 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47039 * 59.99852 * 21 19 17 23 23 H 1.48504 * 109.47399 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47350 * 299.99652 * 21 19 17 25 25 H 1.08996 * 109.46946 * 89.98154 * 1 2 3 26 26 H 1.08999 * 109.47150 * 209.98318 * 1 2 3 27 27 H 1.09004 * 109.47045 * 329.97805 * 1 2 3 28 28 H 1.08004 * 125.88138 * 359.97333 * 3 2 1 29 29 H 1.09007 * 110.43017 * 57.46466 * 8 6 5 30 30 H 1.08996 * 110.89448 * 85.10781 * 9 8 6 31 31 H 1.08993 * 110.76342 * 321.62447 * 9 8 6 32 32 H 1.09002 * 110.48891 * 279.18596 * 10 9 8 33 33 H 1.08998 * 110.48494 * 156.67683 * 10 9 8 34 34 H 1.09001 * 110.03084 * 95.60669 * 11 10 9 35 35 H 1.08996 * 110.03108 * 216.98559 * 11 10 9 36 36 H 1.08999 * 110.04012 * 119.28327 * 12 11 10 37 37 H 1.09006 * 110.02998 * 240.67078 * 12 11 10 38 38 H 1.09007 * 109.46989 * 204.99885 * 16 15 2 39 39 H 1.09001 * 109.46971 * 324.99058 * 16 15 2 40 40 H 0.97004 * 120.00091 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0993 0.0000 4 6 3.6386 0.6798 0.0006 5 7 4.7125 1.4696 0.0003 6 6 4.5659 2.7906 -0.0001 7 8 3.4523 3.2787 0.0002 8 6 5.7800 3.6834 0.0001 9 6 6.5784 3.5137 1.3206 10 6 7.3558 4.8498 1.4190 11 6 6.3607 5.9091 0.9017 12 6 5.3588 5.1675 -0.0004 13 7 3.6381 -0.6930 -0.0050 14 1 4.4190 -1.2682 -0.0101 15 7 2.2997 -1.1093 0.0005 16 6 1.8327 -2.4978 0.0006 17 6 1.5557 -2.9348 -1.4148 18 1 1.7115 -2.2468 -2.2326 19 6 1.1024 -4.2125 -1.6656 20 7 0.9122 -5.0501 -0.6697 21 14 0.7583 -4.7539 -3.4200 22 1 2.0032 -4.6508 -4.2230 23 1 0.2850 -6.1615 -3.4199 24 1 -0.2863 -3.8801 -4.0119 25 1 -0.3633 0.0003 -1.0276 26 1 -0.3633 -0.8901 0.5136 27 1 -0.3633 0.8898 0.5142 28 1 1.9487 2.1231 -0.0004 29 1 6.4124 3.4660 -0.8607 30 1 7.2661 2.6708 1.2535 31 1 5.9031 3.3964 2.1681 32 1 8.2447 4.8214 0.7886 33 1 7.6296 5.0566 2.4536 34 1 5.8381 6.3709 1.7394 35 1 6.8899 6.6693 0.3272 36 1 4.3499 5.2693 0.3994 37 1 5.4010 5.5679 -1.0133 38 1 2.5996 -3.1390 0.4353 39 1 0.9189 -2.5738 0.5898 40 1 0.5936 -5.9492 -0.8462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330566514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:10 Heat of formation + Delta-G solvation = 24.046554 kcal Electronic energy + Delta-G solvation = -21112.279193 eV Core-core repulsion = 17927.996339 eV Total energy + Delta-G solvation = -3184.282854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.47032 -40.44387 -37.95995 -35.99686 -34.79918 -33.72006 -32.43190 -30.22778 -29.47720 -28.86072 -28.33568 -25.14070 -23.74882 -22.01622 -21.18742 -21.03588 -19.90030 -18.92786 -18.41608 -17.45251 -16.87121 -16.59314 -16.50692 -16.20254 -15.71541 -15.26942 -14.56939 -14.44267 -14.30633 -14.19446 -14.08672 -13.76050 -13.68175 -13.23684 -13.00563 -12.72962 -12.69258 -12.28915 -12.11576 -12.04468 -11.93560 -11.89599 -11.58100 -11.23061 -11.11067 -10.79177 -10.65792 -10.35245 -9.84515 -8.62467 -8.29614 -6.57892 0.12567 0.52579 1.38723 1.41103 1.45444 1.49201 2.29276 2.70626 2.86673 2.93461 3.47632 3.65060 3.75497 3.89924 4.14701 4.23438 4.26615 4.58663 4.60129 4.64857 4.67759 4.74862 4.80011 4.82944 4.86842 4.90308 4.99679 5.08447 5.10749 5.16032 5.25540 5.30991 5.35932 5.49139 5.51368 5.54291 5.67785 5.96641 6.11209 6.40842 6.60482 6.86555 7.15782 7.89446 8.64956 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035275 B = 0.003401 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.579966 B = 8229.929296 C = 8402.333766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.198 3.802 3 C -0.348 4.348 4 C 0.454 3.546 5 N -0.710 5.710 6 C 0.484 3.516 7 O -0.615 6.615 8 C -0.088 4.088 9 C -0.098 4.098 10 C -0.117 4.117 11 C -0.118 4.118 12 C -0.115 4.115 13 N -0.463 5.463 14 H 0.452 0.548 15 N -0.344 5.344 16 C 0.267 3.733 17 C -0.564 4.564 18 H 0.057 0.943 19 C 0.033 3.967 20 N -0.912 5.912 21 Si 0.962 3.038 22 H -0.277 1.277 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.174 0.826 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 11.479 3.017 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 C -0.380 4.380 4 C 0.205 3.795 5 N -0.474 5.474 6 C 0.271 3.729 7 O -0.500 6.500 8 C -0.109 4.109 9 C -0.136 4.136 10 C -0.155 4.155 11 C -0.156 4.156 12 C -0.153 4.153 13 N -0.185 5.185 14 H 0.301 0.699 15 N -0.130 5.130 16 C 0.150 3.850 17 C -0.603 4.603 18 H 0.076 0.924 19 C -0.169 4.169 20 N -0.549 5.549 21 Si 0.787 3.213 22 H -0.202 1.202 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.132 0.868 28 H 0.191 0.809 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.402 10.878 3.082 12.531 hybrid contribution -0.397 -0.838 -0.938 1.319 sum 5.005 10.040 2.144 11.421 Atomic orbital electron populations 1.20791 0.83500 1.05484 1.05234 1.21931 0.96098 0.84564 0.90347 1.22196 0.91433 1.00309 1.24049 1.19520 0.92344 0.82610 0.85023 1.68877 1.28059 1.05959 1.44478 1.21465 0.90112 0.86625 0.74690 1.90473 1.28784 1.79501 1.51198 1.21827 0.94255 0.93946 1.00846 1.22329 0.97773 0.98973 0.94498 1.22377 0.98015 0.93049 1.02038 1.22124 0.96474 0.98030 0.98946 1.22077 0.99861 0.92762 1.00582 1.44515 0.98984 1.04997 1.70039 0.69871 1.47852 0.93269 1.08071 1.63840 1.19749 0.96294 0.70734 0.98255 1.21486 1.47604 0.98721 0.92440 0.92449 1.25570 0.94095 0.95860 1.01410 1.69951 1.44721 1.07292 1.32960 0.85525 0.78780 0.77613 0.79368 1.20216 1.20357 1.19129 0.88305 0.89627 0.86782 0.80856 0.88577 0.90749 0.93454 0.90143 0.90355 0.91751 0.90086 0.92626 0.91575 0.93929 0.91125 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.46 10.09 71.24 0.72 -1.74 16 2 C 0.20 6.99 6.93 41.14 0.29 7.27 16 3 C -0.35 -13.69 9.40 22.22 0.21 -13.48 16 4 C 0.45 18.42 8.07 133.82 1.08 19.50 16 5 N -0.71 -29.06 10.49 -309.87 -3.25 -32.31 16 6 C 0.48 19.41 7.01 87.95 0.62 20.03 16 7 O -0.61 -27.35 12.33 -4.00 -0.05 -27.40 16 8 C -0.09 -2.70 3.33 -10.34 -0.03 -2.73 16 9 C -0.10 -2.56 6.33 32.01 0.20 -2.35 16 10 C -0.12 -2.25 6.82 31.67 0.22 -2.03 16 11 C -0.12 -2.38 6.80 31.32 0.21 -2.17 16 12 C -0.11 -3.13 6.19 31.32 0.19 -2.93 16 13 N -0.46 -17.18 7.37 -54.81 -0.40 -17.59 16 14 H 0.45 14.79 8.96 -213.29 -1.91 12.88 16 15 N -0.34 -13.11 3.63 -337.51 -1.23 -14.34 16 16 C 0.27 11.11 5.93 85.63 0.51 11.62 16 17 C -0.56 -26.45 9.39 25.60 0.24 -26.21 16 18 H 0.06 2.79 7.81 -2.91 -0.02 2.76 16 19 C 0.03 1.59 5.46 84.65 0.46 2.05 16 20 N -0.91 -45.42 13.29 21.45 0.28 -45.13 16 21 Si 0.96 38.53 29.54 68.60 2.03 40.56 16 22 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 25 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.08 2.23 7.14 -2.39 -0.02 2.21 16 27 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.17 7.18 5.77 -2.91 -0.02 7.16 16 29 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.80 6.84 -2.39 -0.02 1.79 16 37 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.04 1.85 8.14 -2.38 -0.02 1.84 16 39 H 0.07 2.93 7.18 -2.39 -0.02 2.91 16 40 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -59.72 331.21 1.43 -58.29 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.87 Total: 31.08 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 4.91 Total: 6.83 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -4.60 Total: -109.37 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -59.72 1.43 -58.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330566514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.340 kcal (2) G-P(sol) polarization free energy of solvation -59.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds