Wall clock time and date at job start Mon Mar 30 2020 02:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38106 * 126.29993 * 2 1 4 4 C 1.47357 * 126.41762 * 0.02911 * 3 2 1 5 5 O 1.21625 * 120.00472 * 353.76385 * 4 3 2 6 6 N 1.34784 * 119.99744 * 173.76557 * 4 3 2 7 7 C 1.36982 * 120.00052 * 4.23722 * 6 4 3 8 8 H 1.07996 * 120.00039 * 300.09433 * 7 6 4 9 9 C 1.38981 * 119.99949 * 120.08824 * 7 6 4 10 10 N 1.31412 * 119.99707 * 1.71616 * 9 7 6 11 11 Si 1.86797 * 120.00046 * 181.71269 * 9 7 6 12 12 H 1.48504 * 109.46710 * 90.00164 * 11 9 7 13 13 H 1.48497 * 109.47159 * 210.00446 * 11 9 7 14 14 H 1.48493 * 109.47189 * 330.00588 * 11 9 7 15 15 C 1.46499 * 120.00009 * 184.23846 * 6 4 3 16 16 C 1.52997 * 117.49903 * 182.80286 * 15 6 4 17 17 C 1.52999 * 117.49637 * 114.14688 * 15 6 4 18 18 C 1.41319 * 107.15867 * 180.27938 * 3 2 1 19 19 N 1.30445 * 108.02480 * 359.74855 * 18 3 2 20 20 N 1.34287 * 126.29483 * 179.84592 * 2 1 3 21 21 C 1.46493 * 125.75322 * 359.97438 * 20 2 1 22 22 C 1.53002 * 109.47096 * 239.71665 * 21 20 2 23 23 C 1.53002 * 109.46869 * 119.72181 * 21 20 2 24 24 H 1.08996 * 109.47189 * 270.15316 * 1 2 3 25 25 H 1.09004 * 109.47328 * 30.15711 * 1 2 3 26 26 H 1.09000 * 109.47305 * 150.15467 * 1 2 3 27 27 H 0.96998 * 119.99976 * 185.00819 * 10 9 7 28 28 H 1.08998 * 115.55366 * 328.48089 * 15 6 4 29 29 H 1.09002 * 117.49692 * 0.02562 * 16 15 6 30 30 H 1.09000 * 117.49443 * 145.02161 * 16 15 6 31 31 H 1.09009 * 117.49993 * 214.98086 * 17 15 6 32 32 H 1.09000 * 117.50107 * 359.97438 * 17 15 6 33 33 H 1.08000 * 125.98711 * 179.77180 * 18 3 2 34 34 H 1.09002 * 109.47282 * 359.72120 * 21 20 2 35 35 H 1.09007 * 109.47107 * 60.00597 * 22 21 20 36 36 H 1.08992 * 109.47818 * 300.00018 * 22 21 20 37 37 H 1.09004 * 109.46791 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47217 * 59.99900 * 23 21 20 39 39 H 1.09004 * 109.47188 * 180.02562 * 23 21 20 40 40 H 1.08995 * 109.47227 * 299.99955 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1130 0.0000 4 6 1.8869 2.5201 0.0006 5 8 0.7064 2.7898 -0.1132 6 7 2.7947 3.5082 0.1273 7 6 4.1309 3.2095 0.1682 8 1 4.5175 2.5689 0.9469 9 6 4.9892 3.7309 -0.7926 10 7 4.5247 4.5374 -1.7203 11 14 6.8031 3.2853 -0.7652 12 1 7.0259 2.0673 -1.5850 13 1 7.5974 4.4094 -1.3224 14 1 7.2277 3.0248 0.6337 15 6 2.3524 4.9017 0.2213 16 6 3.4329 5.9822 0.2975 17 6 2.6071 5.6363 1.5390 18 6 3.6597 0.6497 -0.0066 19 7 3.6343 -0.6545 -0.0048 20 7 2.3019 -1.0823 0.0029 21 6 1.8504 -2.4759 0.0072 22 6 2.3857 -3.1816 1.2548 23 6 2.3731 -3.1852 -1.2437 24 1 -0.3633 0.0027 1.0276 25 1 -0.3634 0.8886 -0.5163 26 1 -0.3634 -0.8914 -0.5114 27 1 5.1072 4.8434 -2.4330 28 1 1.4375 5.1421 -0.3202 29 1 4.4729 5.6563 0.2772 30 1 3.2287 6.9336 -0.1937 31 1 1.8600 6.3603 1.8642 32 1 3.1034 5.0827 2.3361 33 1 4.5457 1.2672 -0.0118 34 1 0.7608 -2.5048 0.0127 35 1 2.0132 -2.6764 2.1460 36 1 3.4752 -3.1528 1.2493 37 1 2.0500 -4.2187 1.2577 38 1 3.4628 -3.1563 -1.2491 39 1 2.0368 -4.2220 -1.2408 40 1 1.9919 -2.6825 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331490541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:36 Heat of formation + Delta-G solvation = 77.032775 kcal Electronic energy + Delta-G solvation = -22369.953378 eV Core-core repulsion = 19187.968179 eV Total energy + Delta-G solvation = -3181.985199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72376 -38.31562 -35.91036 -35.29779 -33.15288 -31.78498 -31.21081 -29.27161 -27.30481 -26.62015 -25.19764 -22.83571 -21.92705 -21.14722 -20.05699 -19.05137 -18.71343 -16.89440 -16.18995 -15.48889 -15.15206 -14.86353 -14.52647 -14.08853 -13.62298 -13.42296 -13.14509 -12.85538 -12.75847 -12.60565 -12.37511 -12.08803 -12.04962 -11.97829 -11.60619 -11.38209 -11.28327 -11.08565 -11.05105 -10.69421 -10.39183 -10.29967 -9.95906 -9.51825 -9.16188 -8.67587 -8.63557 -8.42332 -7.74996 -6.99570 -6.31025 -4.26037 2.29848 2.91787 3.12728 3.19931 3.21756 3.26454 4.06895 4.54610 4.64123 4.84964 4.90769 4.93119 4.99297 5.15520 5.33149 5.47639 5.49816 5.51154 5.70208 5.71691 5.89285 5.94818 6.13481 6.13727 6.16260 6.29073 6.31982 6.38735 6.45111 6.54718 6.60390 6.77862 7.02187 7.19536 7.38374 7.49165 7.52342 7.58098 8.23665 8.36083 8.44856 9.05716 9.60182 10.05045 10.69507 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.006681 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.844915 B = 4189.845502 C = 5227.132345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.119 3.881 3 C -0.249 4.249 4 C 0.570 3.430 5 O -0.606 6.606 6 N -0.416 5.416 7 C -0.350 4.350 8 H 0.086 0.914 9 C 0.058 3.942 10 N -0.844 5.844 11 Si 0.893 3.107 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.265 1.265 15 C 0.112 3.888 16 C -0.136 4.136 17 C -0.223 4.223 18 C 0.092 3.908 19 N -0.327 5.327 20 N -0.370 5.370 21 C 0.155 3.845 22 C -0.158 4.158 23 C -0.159 4.159 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.269 0.731 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.217 0.783 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 -10.028 2.824 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.011 4.011 3 C -0.263 4.263 4 C 0.361 3.639 5 O -0.493 6.493 6 N -0.133 5.133 7 C -0.478 4.478 8 H 0.103 0.897 9 C -0.150 4.150 10 N -0.477 5.477 11 Si 0.718 3.282 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.007 3.993 16 C -0.174 4.174 17 C -0.262 4.262 18 C -0.094 4.094 19 N -0.146 5.146 20 N -0.152 5.152 21 C 0.053 3.947 22 C -0.216 4.216 23 C -0.217 4.217 24 H 0.092 0.908 25 H 0.124 0.876 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.232 0.768 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.721 -10.912 2.617 11.546 hybrid contribution 0.644 0.616 -0.171 0.908 sum -2.077 -10.296 2.446 10.784 Atomic orbital electron populations 1.20547 0.87301 1.03947 1.03066 1.21367 0.94254 0.86831 0.98685 1.20048 0.92668 0.93589 1.19971 1.17432 0.84913 0.84093 0.77486 1.90537 1.17935 1.84601 1.56213 1.42404 1.05162 1.02045 1.63719 1.19208 0.82623 1.33234 1.12765 0.89657 1.25641 0.99535 0.94729 0.95145 1.69976 1.36745 1.29001 1.11954 0.86452 0.83446 0.78897 0.79355 1.19556 1.20501 1.18874 1.21145 0.98042 0.83165 0.96974 1.22897 0.99168 0.97542 0.97754 1.23375 1.04630 1.04763 0.93452 1.25581 0.99726 0.90235 0.93827 1.77091 0.95688 1.14418 1.27424 1.48493 1.04568 1.04779 1.57355 1.21174 0.98935 0.77686 0.96888 1.22097 1.03063 0.99818 0.96598 1.22112 1.03145 0.99808 0.96648 0.90757 0.87552 0.92404 0.92038 0.88159 0.87153 0.91006 0.90678 0.89781 0.76770 0.88625 0.92208 0.91047 0.91223 0.91030 0.91224 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.46 36.01 0.34 -1.10 16 2 C 0.12 2.32 7.01 -81.57 -0.57 1.75 16 3 C -0.25 -5.71 6.03 -105.06 -0.63 -6.35 16 4 C 0.57 14.61 7.63 -12.55 -0.10 14.51 16 5 O -0.61 -16.16 14.59 5.26 0.08 -16.08 16 6 N -0.42 -10.63 2.70 -108.95 -0.29 -10.92 16 7 C -0.35 -8.65 5.40 -14.98 -0.08 -8.73 16 8 H 0.09 2.06 6.14 -52.49 -0.32 1.74 16 9 C 0.06 1.42 3.84 -17.46 -0.07 1.36 16 10 N -0.84 -21.79 11.10 55.50 0.62 -21.18 16 11 Si 0.89 18.79 29.03 -169.99 -4.94 13.85 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 14 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 15 C 0.11 2.71 5.61 -67.93 -0.38 2.33 16 16 C -0.14 -3.03 8.30 -26.70 -0.22 -3.25 16 17 C -0.22 -4.68 10.37 -26.70 -0.28 -4.96 16 18 C 0.09 2.03 10.32 -16.97 -0.18 1.86 16 19 N -0.33 -6.61 12.33 30.87 0.38 -6.23 16 20 N -0.37 -6.53 3.25 -50.14 -0.16 -6.69 16 21 C 0.16 1.97 3.62 -67.93 -0.25 1.72 16 22 C -0.16 -1.75 9.45 37.16 0.35 -1.40 16 23 C -0.16 -1.82 9.44 37.16 0.35 -1.47 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.11 1.95 6.41 -51.93 -0.33 1.62 16 26 H 0.06 0.72 7.08 -51.93 -0.37 0.35 16 27 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 28 H 0.10 2.51 7.76 -51.93 -0.40 2.11 16 29 H 0.11 2.65 5.46 -51.93 -0.28 2.36 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 32 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 33 H 0.22 4.83 4.20 -52.49 -0.22 4.61 16 34 H 0.10 1.01 6.63 -51.93 -0.34 0.67 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -29.49 324.21 -6.78 -36.27 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.64 Total: 9.82 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.71 Total: -3.72 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.54 Total: -45.02 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.08 Total: -16.08 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.94 Total: 13.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.49 -6.78 -36.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331490541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.301 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds