Wall clock time and date at job start Mon Mar 30 2020 02:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38106 * 126.29993 * 2 1 4 4 C 1.47357 * 126.41762 * 0.02911 * 3 2 1 5 5 O 1.21625 * 120.00472 * 353.76385 * 4 3 2 6 6 N 1.34784 * 119.99744 * 173.76557 * 4 3 2 7 7 C 1.36982 * 120.00052 * 4.23722 * 6 4 3 8 8 H 1.07996 * 120.00039 * 300.09433 * 7 6 4 9 9 C 1.38981 * 119.99949 * 120.08824 * 7 6 4 10 10 N 1.31412 * 119.99707 * 1.71616 * 9 7 6 11 11 Si 1.86797 * 120.00046 * 181.71269 * 9 7 6 12 12 H 1.48504 * 109.46710 * 90.00164 * 11 9 7 13 13 H 1.48497 * 109.47159 * 210.00446 * 11 9 7 14 14 H 1.48493 * 109.47189 * 330.00588 * 11 9 7 15 15 C 1.46499 * 120.00009 * 184.23846 * 6 4 3 16 16 C 1.52997 * 117.49903 * 182.80286 * 15 6 4 17 17 C 1.52999 * 117.49637 * 114.14688 * 15 6 4 18 18 C 1.41319 * 107.15867 * 180.27938 * 3 2 1 19 19 N 1.30445 * 108.02480 * 359.74855 * 18 3 2 20 20 N 1.34287 * 126.29483 * 179.84592 * 2 1 3 21 21 C 1.46493 * 125.75322 * 359.97438 * 20 2 1 22 22 C 1.53002 * 109.47096 * 239.71665 * 21 20 2 23 23 C 1.53002 * 109.46869 * 119.72181 * 21 20 2 24 24 H 1.08996 * 109.47189 * 270.15316 * 1 2 3 25 25 H 1.09004 * 109.47328 * 30.15711 * 1 2 3 26 26 H 1.09000 * 109.47305 * 150.15467 * 1 2 3 27 27 H 0.96998 * 119.99976 * 185.00819 * 10 9 7 28 28 H 1.08998 * 115.55366 * 328.48089 * 15 6 4 29 29 H 1.09002 * 117.49692 * 0.02562 * 16 15 6 30 30 H 1.09000 * 117.49443 * 145.02161 * 16 15 6 31 31 H 1.09009 * 117.49993 * 214.98086 * 17 15 6 32 32 H 1.09000 * 117.50107 * 359.97438 * 17 15 6 33 33 H 1.08000 * 125.98711 * 179.77180 * 18 3 2 34 34 H 1.09002 * 109.47282 * 359.72120 * 21 20 2 35 35 H 1.09007 * 109.47107 * 60.00597 * 22 21 20 36 36 H 1.08992 * 109.47818 * 300.00018 * 22 21 20 37 37 H 1.09004 * 109.46791 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47217 * 59.99900 * 23 21 20 39 39 H 1.09004 * 109.47188 * 180.02562 * 23 21 20 40 40 H 1.08995 * 109.47227 * 299.99955 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1130 0.0000 4 6 1.8869 2.5201 0.0006 5 8 0.7064 2.7898 -0.1132 6 7 2.7947 3.5082 0.1273 7 6 4.1309 3.2095 0.1682 8 1 4.5175 2.5689 0.9469 9 6 4.9892 3.7309 -0.7926 10 7 4.5247 4.5374 -1.7203 11 14 6.8031 3.2853 -0.7652 12 1 7.0259 2.0673 -1.5850 13 1 7.5974 4.4094 -1.3224 14 1 7.2277 3.0248 0.6337 15 6 2.3524 4.9017 0.2213 16 6 3.4329 5.9822 0.2975 17 6 2.6071 5.6363 1.5390 18 6 3.6597 0.6497 -0.0066 19 7 3.6343 -0.6545 -0.0048 20 7 2.3019 -1.0823 0.0029 21 6 1.8504 -2.4759 0.0072 22 6 2.3857 -3.1816 1.2548 23 6 2.3731 -3.1852 -1.2437 24 1 -0.3633 0.0027 1.0276 25 1 -0.3634 0.8886 -0.5163 26 1 -0.3634 -0.8914 -0.5114 27 1 5.1072 4.8434 -2.4330 28 1 1.4375 5.1421 -0.3202 29 1 4.4729 5.6563 0.2772 30 1 3.2287 6.9336 -0.1937 31 1 1.8600 6.3603 1.8642 32 1 3.1034 5.0827 2.3361 33 1 4.5457 1.2672 -0.0118 34 1 0.7608 -2.5048 0.0127 35 1 2.0132 -2.6764 2.1460 36 1 3.4752 -3.1528 1.2493 37 1 2.0500 -4.2187 1.2577 38 1 3.4628 -3.1563 -1.2491 39 1 2.0368 -4.2220 -1.2408 40 1 1.9919 -2.6825 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331490541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:36 Heat of formation + Delta-G solvation = 59.970211 kcal Electronic energy + Delta-G solvation = -22370.693266 eV Core-core repulsion = 19187.968179 eV Total energy + Delta-G solvation = -3182.725087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26702 -40.15340 -37.74682 -36.51486 -34.97056 -33.33938 -33.01463 -30.71993 -28.18800 -28.11058 -27.10015 -24.30408 -23.49195 -22.89395 -21.80985 -20.78388 -20.15436 -18.63523 -17.76384 -17.06466 -16.92658 -16.32914 -16.19004 -15.41172 -15.28057 -14.96600 -14.77770 -14.51555 -14.10461 -13.97549 -13.75593 -13.51200 -13.27844 -13.21084 -13.02600 -12.94272 -12.79470 -12.50822 -12.29908 -12.13326 -12.09230 -12.02012 -11.51399 -11.33859 -10.99191 -10.54146 -10.32874 -10.10502 -9.41277 -8.87539 -8.19406 -6.19435 0.74640 1.42771 1.45796 1.52759 1.55504 1.60334 2.29804 2.78929 3.00285 3.03227 3.50425 3.60359 3.79142 3.97605 4.04925 4.23433 4.24493 4.31147 4.48014 4.54685 4.64331 4.68480 4.70796 4.78329 4.78854 4.82202 4.91499 4.95065 5.03046 5.14604 5.24427 5.27627 5.30502 5.41957 5.47489 5.68585 5.81029 6.20344 6.33016 6.47976 6.83033 7.14899 7.68826 8.14571 8.81738 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.006681 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.844915 B = 4189.845502 C = 5227.132345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.131 3.869 3 C -0.295 4.295 4 C 0.554 3.446 5 O -0.631 6.631 6 N -0.427 5.427 7 C -0.352 4.352 8 H 0.087 0.913 9 C 0.026 3.974 10 N -0.876 5.876 11 Si 0.953 3.047 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.255 1.255 15 C 0.077 3.923 16 C -0.127 4.127 17 C -0.194 4.194 18 C 0.079 3.921 19 N -0.332 5.332 20 N -0.355 5.355 21 C 0.138 3.862 22 C -0.152 4.152 23 C -0.154 4.154 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.269 0.731 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.205 0.795 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.109 0.891 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.255 -12.198 3.556 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.309 4.309 4 C 0.346 3.654 5 O -0.520 6.520 6 N -0.144 5.144 7 C -0.480 4.480 8 H 0.104 0.896 9 C -0.180 4.180 10 N -0.510 5.510 11 Si 0.777 3.223 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.178 1.178 15 C -0.028 4.028 16 C -0.165 4.165 17 C -0.232 4.232 18 C -0.106 4.106 19 N -0.152 5.152 20 N -0.136 5.136 21 C 0.039 3.961 22 C -0.210 4.210 23 C -0.212 4.212 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.221 0.779 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.049 -13.105 3.367 13.870 hybrid contribution 0.659 1.168 -0.399 1.399 sum -2.390 -11.937 2.968 12.531 Atomic orbital electron populations 1.20603 0.84703 1.04709 1.04357 1.21805 0.95764 0.86344 0.96366 1.20084 0.93878 0.93309 1.23627 1.17945 0.84804 0.85358 0.77285 1.90488 1.18652 1.85255 1.57606 1.42618 1.05553 1.02522 1.63660 1.19347 0.82516 1.33164 1.13011 0.89605 1.26234 1.02917 0.94309 0.94494 1.70086 1.38086 1.30141 1.12676 0.85530 0.78886 0.78281 0.79648 1.19769 1.20375 1.17825 1.21237 0.98332 0.83488 0.99756 1.22789 0.97783 0.97235 0.98678 1.23374 1.04115 1.03709 0.92040 1.25330 0.99278 0.90937 0.95073 1.77003 0.97529 1.13351 1.27318 1.48950 1.03331 1.06413 1.54918 1.21840 1.00938 0.74984 0.98368 1.22080 1.01784 1.01821 0.95291 1.22103 1.01835 1.01882 0.95393 0.89010 0.90217 0.88141 0.92099 0.89978 0.88838 0.89652 0.87719 0.90020 0.77902 0.85442 0.92854 0.92931 0.87325 0.92978 0.87237 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.57 9.46 71.24 0.67 -1.89 16 2 C 0.13 4.97 7.01 42.15 0.30 5.26 16 3 C -0.29 -13.83 6.03 -20.15 -0.12 -13.95 16 4 C 0.55 29.43 7.63 86.64 0.66 30.09 16 5 O -0.63 -34.90 14.59 -4.11 -0.06 -34.96 16 6 N -0.43 -22.53 2.70 -616.86 -1.67 -24.20 16 7 C -0.35 -17.88 5.40 84.07 0.45 -17.43 16 8 H 0.09 4.28 6.14 -2.91 -0.02 4.26 16 9 C 0.03 1.30 3.84 84.93 0.33 1.63 16 10 N -0.88 -46.33 11.10 21.67 0.24 -46.09 16 11 Si 0.95 39.10 29.03 68.60 1.99 41.09 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 14 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 15 C 0.08 3.83 5.61 44.99 0.25 4.08 16 16 C -0.13 -5.70 8.30 30.62 0.25 -5.44 16 17 C -0.19 -8.02 10.37 30.62 0.32 -7.70 16 18 C 0.08 3.57 10.32 85.66 0.88 4.46 16 19 N -0.33 -13.36 12.33 -56.26 -0.69 -14.05 16 20 N -0.35 -11.95 3.25 -312.55 -1.02 -12.97 16 21 C 0.14 3.03 3.62 44.99 0.16 3.19 16 22 C -0.15 -2.87 9.45 71.98 0.68 -2.19 16 23 C -0.15 -3.04 9.44 71.98 0.68 -2.36 16 24 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.08 2.90 6.41 -2.39 -0.02 2.89 16 26 H 0.10 2.11 7.08 -2.39 -0.02 2.09 16 27 H 0.27 13.57 8.32 -92.71 -0.77 12.80 16 28 H 0.08 4.30 7.76 -2.39 -0.02 4.28 16 29 H 0.09 4.54 5.46 -2.39 -0.01 4.52 16 30 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.10 3.69 8.14 -2.38 -0.02 3.68 16 32 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.20 9.45 4.20 -2.91 -0.01 9.44 16 34 H 0.13 2.04 6.63 -2.39 -0.02 2.03 16 35 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -66.74 324.21 5.36 -61.38 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 1.05 Total: 32.06 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.52 Total: -2.25 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -3.14 Total: -97.31 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.06 Total: -34.96 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.99 Total: 41.09 kcal Total: -66.74 5.36 -61.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331490541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.348 kcal (2) G-P(sol) polarization free energy of solvation -66.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds