Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35366 * 126.38833 * 2 1 4 4 C 1.41493 * 105.50346 * 180.13891 * 3 2 1 5 5 C 1.47721 * 126.51625 * 179.84134 * 4 3 2 6 6 O 1.21566 * 119.99707 * 354.87304 * 5 4 3 7 7 N 1.34770 * 119.99955 * 174.87383 * 5 4 3 8 8 C 1.46500 * 119.99987 * 5.55191 * 7 5 4 9 9 C 1.50702 * 109.47049 * 275.41052 * 8 7 5 10 10 H 1.08000 * 120.00227 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00177 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99978 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00173 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46868 * 60.00057 * 13 11 9 15 15 H 1.48506 * 109.46864 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47168 * 299.99875 * 13 11 9 17 17 C 1.46500 * 120.00201 * 185.55110 * 7 5 4 18 18 C 1.53001 * 109.47156 * 265.02656 * 17 7 5 19 19 C 1.52994 * 117.49588 * 243.74006 * 18 17 7 20 20 C 1.52997 * 117.49658 * 175.08181 * 18 17 7 21 21 N 1.31801 * 106.96647 * 359.58200 * 4 3 2 22 22 N 1.28464 * 110.07199 * 0.25837 * 21 4 3 23 23 C 1.46511 * 124.88483 * 179.97438 * 22 21 4 24 24 H 1.08997 * 109.46784 * 270.32745 * 1 2 3 25 25 H 1.08992 * 109.47216 * 30.32779 * 1 2 3 26 26 H 1.09001 * 109.46626 * 150.32695 * 1 2 3 27 27 H 1.08008 * 127.24385 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47551 * 35.41187 * 8 7 5 29 29 H 1.09000 * 109.47016 * 155.41749 * 8 7 5 30 30 H 0.96996 * 120.00317 * 179.97438 * 12 11 9 31 31 H 1.09007 * 109.47272 * 145.02093 * 17 7 5 32 32 H 1.09008 * 109.46726 * 25.02720 * 17 7 5 33 33 H 1.08996 * 115.54701 * 29.41610 * 18 17 7 34 34 H 1.08995 * 117.50325 * 0.02562 * 19 18 17 35 35 H 1.09007 * 117.49036 * 145.02204 * 19 18 17 36 36 H 1.09002 * 117.50239 * 214.97857 * 20 18 17 37 37 H 1.09003 * 117.50126 * 0.02562 * 20 18 17 38 38 H 1.08994 * 109.46603 * 90.02704 * 23 22 21 39 39 H 1.09001 * 109.46838 * 210.02673 * 23 22 21 40 40 H 1.08995 * 109.46953 * 330.02981 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5853 -0.0033 5 6 4.8765 1.3812 -0.0079 6 8 4.8233 2.5919 -0.1032 7 7 6.0708 0.7650 0.0936 8 6 6.1431 -0.6982 0.0859 9 6 5.9079 -1.2201 1.4800 10 1 5.7226 -0.5309 2.2905 11 6 5.9292 -2.5775 1.7207 12 7 6.1543 -3.4169 0.7336 13 14 5.6369 -3.2245 3.4485 14 1 4.2934 -2.7983 3.9159 15 1 5.7104 -4.7077 3.4407 16 1 6.6741 -2.6818 4.3623 17 6 7.2968 1.5583 0.2116 18 6 7.9199 1.7432 -1.1735 19 6 9.2994 1.1276 -1.4153 20 6 9.1513 2.6450 -1.2794 21 7 3.5420 -0.7296 0.0042 22 7 2.3081 -1.0870 0.0063 23 6 1.8376 -2.4745 0.0137 24 1 -0.3633 0.0059 1.0276 25 1 -0.3633 0.8870 -0.5189 26 1 -0.3632 -0.8929 -0.5088 27 1 2.0057 2.1260 -0.0004 28 1 5.3813 -1.0962 -0.5844 29 1 7.1290 -1.0114 -0.2577 30 1 6.1697 -4.3719 0.9029 31 1 8.0029 1.0415 0.8617 32 1 7.0588 2.5337 0.6362 33 1 7.2182 1.7495 -2.0075 34 1 9.7630 0.5904 -0.5879 35 1 9.5055 0.7291 -2.4088 36 1 9.2601 3.2443 -2.1834 37 1 9.5178 3.1062 -0.3623 38 1 1.7207 -2.8129 1.0431 39 1 0.8782 -2.5356 -0.5001 40 1 2.5640 -3.1071 -0.4965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331868464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = 78.691890 kcal Electronic energy + Delta-G solvation = -22170.088123 eV Core-core repulsion = 18988.174869 eV Total energy + Delta-G solvation = -3181.913254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.97666 -38.78273 -36.79917 -34.54854 -32.90282 -32.29151 -32.13014 -28.09533 -27.12960 -26.61005 -25.50727 -23.01659 -22.00749 -21.83487 -20.31568 -19.98336 -18.01547 -16.52317 -16.23850 -15.76285 -15.63386 -15.57321 -14.50448 -14.38285 -14.21524 -13.67109 -13.32058 -13.05591 -12.92832 -12.53563 -12.23017 -12.18205 -12.08773 -11.89474 -11.87762 -11.39442 -11.20388 -11.12811 -10.87940 -10.74398 -10.20786 -10.05571 -9.63054 -9.51988 -9.37174 -9.11918 -8.44962 -8.37127 -8.22746 -7.55869 -5.98315 -3.98624 2.47275 2.68073 3.09300 3.28353 3.32498 3.37225 3.96155 4.24933 4.34202 4.46833 4.89517 5.02093 5.16998 5.22851 5.30583 5.35432 5.38605 5.43722 5.53410 5.62957 5.77031 5.85402 5.90380 5.91836 6.00665 6.19561 6.23578 6.25990 6.34340 6.43948 6.45264 6.67951 6.97278 7.04145 7.33639 7.58260 7.85791 7.94597 8.31809 8.44906 8.70810 9.03338 9.17844 9.62617 11.09578 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.008147 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.497198 B = 3435.965799 C = 5170.926356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.018 4.018 3 C -0.187 4.187 4 C -0.021 4.021 5 C 0.601 3.399 6 O -0.572 6.572 7 N -0.583 5.583 8 C 0.235 3.765 9 C -0.503 4.503 10 H 0.050 0.950 11 C 0.069 3.931 12 N -0.892 5.892 13 Si 0.883 3.117 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.150 3.850 18 C -0.155 4.155 19 C -0.178 4.178 20 C -0.181 4.181 21 N -0.179 5.179 22 N -0.289 5.289 23 C 0.092 3.908 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.151 0.849 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.259 0.741 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.248 3.465 -3.422 7.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C -0.215 4.215 4 C -0.181 4.181 5 C 0.388 3.612 6 O -0.452 6.452 7 N -0.312 5.312 8 C 0.115 3.885 9 C -0.542 4.542 10 H 0.069 0.931 11 C -0.132 4.132 12 N -0.532 5.532 13 Si 0.712 3.288 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.204 1.204 17 C 0.027 3.973 18 C -0.175 4.175 19 C -0.215 4.215 20 C -0.219 4.219 21 N -0.013 5.013 22 N -0.078 5.078 23 C -0.049 4.049 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.169 0.831 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.640 2.753 -3.498 7.185 hybrid contribution -0.610 -0.027 1.116 1.272 sum -6.250 2.726 -2.383 7.223 Atomic orbital electron populations 1.20225 0.87720 1.02969 1.02518 1.21266 0.94870 0.87410 1.10533 1.21346 0.91062 0.98759 1.10357 1.21803 0.94454 0.90212 1.11595 1.16981 0.82215 0.85741 0.76260 1.90662 1.87250 1.13706 1.53545 1.48111 1.04098 1.10037 1.68942 1.19725 0.98621 0.71900 0.98218 1.21272 1.47612 0.91569 0.93791 0.93126 1.24739 0.95543 0.96657 0.96237 1.69924 1.50224 1.02371 1.30688 0.86808 0.78706 0.77580 0.85720 1.20731 1.21338 1.20379 1.20881 0.86427 0.96303 0.93711 1.22756 0.90695 1.03891 1.00120 1.23023 1.00548 0.95149 1.02786 1.22901 1.02982 0.93279 1.02721 1.74584 0.98557 1.13975 1.14190 1.45670 1.03653 1.06970 1.51528 1.21998 1.00676 0.78259 1.03998 0.91096 0.90298 0.91747 0.83129 0.91776 0.95066 0.93120 0.90398 0.90429 0.88075 0.88604 0.89314 0.89302 0.88976 0.90350 0.89776 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.10 36.01 0.36 -0.46 16 2 C -0.02 -0.30 6.92 -82.21 -0.57 -0.87 16 3 C -0.19 -3.56 10.73 -39.37 -0.42 -3.98 16 4 C -0.02 -0.47 6.74 -82.77 -0.56 -1.03 16 5 C 0.60 14.25 7.62 -12.39 -0.09 14.15 16 6 O -0.57 -14.02 16.49 5.31 0.09 -13.93 16 7 N -0.58 -13.43 2.47 -176.22 -0.44 -13.87 16 8 C 0.24 5.95 4.78 -5.19 -0.02 5.92 16 9 C -0.50 -13.62 8.05 -34.44 -0.28 -13.89 16 10 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 11 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 12 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 13 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.15 2.98 5.68 -4.04 -0.02 2.95 16 18 C -0.16 -2.70 6.01 -90.62 -0.54 -3.25 16 19 C -0.18 -2.70 10.18 -26.70 -0.27 -2.97 16 20 C -0.18 -2.55 10.25 -26.70 -0.27 -2.82 16 21 N -0.18 -4.04 7.64 33.42 0.26 -3.78 16 22 N -0.29 -5.33 3.70 -63.85 -0.24 -5.56 16 23 C 0.09 1.28 11.11 59.85 0.66 1.94 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.57 7.00 -51.93 -0.36 0.21 16 27 H 0.15 2.60 8.06 -52.48 -0.42 2.18 16 28 H 0.06 1.72 5.65 -51.93 -0.29 1.43 16 29 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.08 1.51 7.84 -51.93 -0.41 1.10 16 32 H 0.08 1.53 7.36 -51.92 -0.38 1.15 16 33 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 34 H 0.10 1.46 8.03 -51.93 -0.42 1.04 16 35 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.82 6.95 -51.93 -0.36 0.45 16 40 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -32.16 338.25 -7.63 -39.79 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.99 Total: 2.60 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.13 Total: -2.52 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.32 Total: -47.17 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.16 -7.63 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331868464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.486 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds